Wall clock time and date at job start Tue Mar 31 2020 00:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52998 * 109.47055 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.46986 * 240.00300 * 3 2 1 6 6 C 1.52998 * 109.47197 * 299.99881 * 5 3 2 7 7 C 1.50698 * 109.46917 * 120.00047 * 3 2 1 8 8 O 1.21284 * 120.00182 * 0.02562 * 7 3 2 9 9 N 1.34774 * 120.00033 * 180.02562 * 7 3 2 10 10 C 1.46499 * 120.00164 * 180.02562 * 9 7 3 11 11 H 1.08995 * 115.51920 * 9.58192 * 10 9 7 12 12 C 1.53001 * 117.44178 * 224.23830 * 10 9 7 13 13 H 1.08997 * 119.54133 * 4.11759 * 12 10 9 14 14 C 1.57696 * 116.10900 * 161.64009 * 12 10 9 15 15 N 1.48143 * 104.67752 * 87.30902 * 14 12 10 16 16 C 1.36937 * 127.84059 * 139.77337 * 15 14 12 17 17 H 1.08004 * 119.99579 * 344.33289 * 16 15 14 18 18 C 1.38809 * 119.99843 * 164.33804 * 16 15 14 19 19 N 1.31615 * 120.00304 * 350.56492 * 18 16 15 20 20 Si 1.86809 * 119.99743 * 170.56855 * 18 16 15 21 21 H 1.48495 * 109.46789 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46724 * 120.00033 * 20 18 16 23 23 H 1.48498 * 109.46918 * 239.99924 * 20 18 16 24 24 C 1.48145 * 104.32182 * 319.77502 * 15 14 12 25 25 C 1.53004 * 117.44085 * 154.99852 * 10 9 7 26 26 H 1.08998 * 119.54126 * 355.88693 * 25 10 9 27 27 H 1.07995 * 119.99638 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99870 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99870 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47615 * 59.99652 * 4 3 2 31 31 H 1.09001 * 109.47400 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47212 * 299.99942 * 4 3 2 33 33 H 1.08998 * 109.47219 * 60.00096 * 5 3 2 34 34 H 1.09001 * 109.46933 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47001 * 60.00260 * 6 5 3 36 36 H 1.09002 * 109.47275 * 180.02562 * 6 5 3 37 37 H 1.09008 * 109.47319 * 300.00230 * 6 5 3 38 38 H 0.97003 * 119.99910 * 0.02562 * 9 7 3 39 39 H 1.08997 * 110.92119 * 328.22429 * 14 12 10 40 40 H 1.09008 * 109.93320 * 205.88947 * 14 12 10 41 41 H 0.96999 * 120.00122 * 179.97438 * 19 18 16 42 42 H 1.09007 * 110.40557 * 280.80111 * 24 15 14 43 43 H 1.09002 * 110.40964 * 158.37109 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2493 6 6 3.9373 0.2233 -1.2493 7 6 2.9299 1.3849 1.2305 8 8 2.9354 0.4717 2.0286 9 7 3.6987 2.4711 1.4440 10 6 4.5414 2.5484 2.6399 11 1 4.6176 1.6294 3.2209 12 6 4.5542 3.8710 3.4091 13 1 3.8977 4.6821 3.0944 14 6 5.0839 3.8056 4.8930 15 7 6.5503 3.9807 4.7761 16 6 7.3766 4.7106 5.5883 17 1 6.9599 5.4396 6.2675 18 6 8.7498 4.5136 5.5385 19 7 9.2455 3.5047 4.8538 20 14 9.8941 5.6803 6.4434 21 1 9.0933 6.7240 7.1321 22 1 10.6845 4.9206 7.4451 23 1 10.8143 6.3239 5.4716 24 6 6.9200 3.1869 3.5812 25 6 5.7793 3.4452 2.5734 26 1 6.0352 3.9393 1.6361 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 0.4429 2.4101 0.8908 31 1 1.6142 3.4120 0.0011 32 1 0.4423 2.4105 -0.8891 33 1 2.3164 1.3285 -2.1392 34 1 3.4884 2.3300 -1.2490 35 1 3.3923 -0.7207 -1.2493 36 1 4.5643 0.2813 -2.1391 37 1 4.5641 0.2810 -0.3593 38 1 3.6941 3.2017 0.8059 39 1 4.8511 2.8426 5.3474 40 1 4.6499 4.6162 5.4786 41 1 10.2050 3.3673 4.8187 42 1 6.9740 2.1271 3.8307 43 1 7.8711 3.5315 3.1752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114792315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:08 Heat of formation + Delta-G solvation = 37.357889 kcal Electronic energy + Delta-G solvation = -21958.144434 eV Core-core repulsion = 18812.553236 eV Total energy + Delta-G solvation = -3145.591198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.43869 -38.55298 -36.55518 -34.48737 -32.76824 -32.09199 -30.37750 -29.44872 -27.01698 -25.79540 -25.04409 -23.04638 -22.05668 -20.65524 -20.39139 -19.30859 -18.43852 -17.03426 -16.74802 -16.32726 -15.66778 -15.10067 -14.72539 -14.62422 -14.13768 -13.64953 -13.41909 -13.17464 -12.84285 -12.72947 -12.51262 -12.24248 -12.15863 -12.04473 -11.52002 -11.49106 -11.41618 -11.08571 -10.97186 -10.85197 -10.70968 -10.34543 -10.18998 -10.12816 -9.80692 -9.73911 -9.43288 -9.17599 -8.74261 -8.29688 -6.87464 -5.80608 -3.14773 2.09240 2.68904 3.24345 3.37850 3.43576 3.46103 4.32671 4.33335 4.45553 4.49917 4.65258 4.84632 5.03973 5.13675 5.18259 5.30703 5.33747 5.36916 5.38745 5.40891 5.58515 5.62403 5.71537 5.74293 5.74497 5.81490 5.87119 5.95491 6.11042 6.16953 6.26493 6.46128 6.52178 6.59541 6.69222 6.83658 6.89204 7.34722 7.52541 7.61966 7.71073 8.19511 8.33137 9.10132 9.72952 10.50127 11.33885 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.003449 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.070141 B = 8116.999898 C = 8365.511834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.054 4.054 4 C -0.144 4.144 5 C -0.106 4.106 6 C -0.159 4.159 7 C 0.530 3.470 8 O -0.534 6.534 9 N -0.696 5.696 10 C 0.094 3.906 11 H 0.130 0.870 12 C -0.186 4.186 13 H 0.106 0.894 14 C 0.158 3.842 15 N -0.593 5.593 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.914 5.914 20 Si 0.913 3.087 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.186 3.814 25 C -0.180 4.180 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.397 0.603 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 -2.809 -14.270 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.137 4.137 3 C -0.057 4.057 4 C -0.202 4.202 5 C -0.144 4.144 6 C -0.216 4.216 7 C 0.316 3.684 8 O -0.410 6.410 9 N -0.345 5.345 10 C -0.012 4.012 11 H 0.148 0.852 12 C -0.207 4.207 13 H 0.124 0.876 14 C 0.030 3.970 15 N -0.316 5.316 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.560 5.560 20 Si 0.743 3.257 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.060 3.940 25 C -0.201 4.201 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.231 0.769 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.041 -3.427 -13.584 20.555 hybrid contribution 0.626 0.999 0.026 1.179 sum -14.415 -2.429 -13.557 19.937 Atomic orbital electron populations 1.23943 0.95864 1.02130 1.01544 1.22511 0.95492 0.96753 0.98918 1.19993 0.95594 0.95936 0.94186 1.21948 0.98819 0.96375 1.03024 1.21552 0.97226 0.99774 0.95836 1.21865 0.99072 0.98329 1.02335 1.20284 0.79542 0.81875 0.86749 1.90702 1.65691 1.37716 1.46889 1.45407 1.44068 1.20547 1.24475 1.21883 0.94331 0.96470 0.88475 0.85194 1.25084 1.01312 0.97409 0.96926 0.87636 1.21692 0.86330 0.98353 0.90575 1.45131 1.01038 1.56780 1.28680 1.19040 0.87364 1.13138 1.15976 0.90467 1.24903 0.97100 0.97867 1.00395 1.69909 1.11693 1.29126 1.45307 0.86040 0.80777 0.80037 0.78857 1.20353 1.21659 1.21625 1.21055 0.94248 0.94271 0.84441 1.24624 0.91866 1.02868 1.00749 0.88178 0.88316 0.87992 0.86700 0.91563 0.91852 0.91055 0.90711 0.91256 0.92176 0.92278 0.92241 0.76926 0.95210 0.93164 0.93579 0.95617 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 13.70 29.01 0.40 -1.39 16 2 C -0.12 -1.26 7.29 -36.03 -0.26 -1.52 16 3 C -0.05 -0.55 0.63 -156.82 -0.10 -0.65 16 4 C -0.14 -1.17 7.02 37.16 0.26 -0.91 16 5 C -0.11 -0.90 4.89 -26.73 -0.13 -1.03 16 6 C -0.16 -1.55 9.41 37.16 0.35 -1.20 16 7 C 0.53 7.50 5.21 -10.99 -0.06 7.44 16 8 O -0.53 -9.85 15.60 5.55 0.09 -9.76 16 9 N -0.70 -9.42 5.35 -53.81 -0.29 -9.70 16 10 C 0.09 1.61 5.92 -67.93 -0.40 1.21 16 11 H 0.13 2.56 7.40 -51.93 -0.38 2.17 16 12 C -0.19 -3.32 7.34 -87.38 -0.64 -3.96 16 13 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 14 C 0.16 3.37 7.10 -0.57 0.00 3.37 16 15 N -0.59 -15.30 3.38 -166.72 -0.56 -15.86 16 16 C -0.23 -6.34 10.35 -15.06 -0.16 -6.50 16 17 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 18 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 19 N -0.91 -26.80 10.88 55.49 0.60 -26.20 16 20 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.19 4.49 5.70 -2.41 -0.01 4.48 16 25 C -0.18 -3.39 6.98 -89.21 -0.62 -4.01 16 26 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 27 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 28 H 0.10 0.80 5.69 -52.49 -0.30 0.50 16 29 H 0.12 1.29 7.00 -52.49 -0.37 0.92 16 30 H 0.07 0.59 7.50 -51.93 -0.39 0.20 16 31 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 32 H 0.07 0.46 7.50 -51.93 -0.39 0.07 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.53 7.57 -51.93 -0.39 0.14 16 35 H 0.06 0.57 6.62 -51.93 -0.34 0.22 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.72 7.22 -51.92 -0.37 0.35 16 38 H 0.40 4.27 7.66 -40.82 -0.31 3.95 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 2.41 6.53 -51.93 -0.34 2.08 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -31.90 342.46 -8.41 -40.31 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.91 Total: 4.12 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.47 Total: -4.93 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.25 Total: -51.77 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.90 -8.41 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114792315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.668 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds