Wall clock time and date at job start Tue Mar 31 2020 00:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52998 * 109.47055 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.46986 * 240.00300 * 3 2 1 6 6 C 1.52998 * 109.47197 * 299.99881 * 5 3 2 7 7 C 1.50698 * 109.46917 * 120.00047 * 3 2 1 8 8 O 1.21284 * 120.00182 * 0.02562 * 7 3 2 9 9 N 1.34774 * 120.00033 * 180.02562 * 7 3 2 10 10 C 1.46499 * 120.00164 * 180.02562 * 9 7 3 11 11 H 1.08995 * 115.51920 * 9.58192 * 10 9 7 12 12 C 1.53001 * 117.44178 * 224.23830 * 10 9 7 13 13 H 1.08997 * 119.54133 * 4.11759 * 12 10 9 14 14 C 1.57696 * 116.10900 * 161.64009 * 12 10 9 15 15 N 1.48143 * 104.67752 * 87.30902 * 14 12 10 16 16 C 1.36937 * 127.84059 * 139.77337 * 15 14 12 17 17 H 1.08004 * 119.99579 * 344.33289 * 16 15 14 18 18 C 1.38809 * 119.99843 * 164.33804 * 16 15 14 19 19 N 1.31615 * 120.00304 * 350.56492 * 18 16 15 20 20 Si 1.86809 * 119.99743 * 170.56855 * 18 16 15 21 21 H 1.48495 * 109.46789 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46724 * 120.00033 * 20 18 16 23 23 H 1.48498 * 109.46918 * 239.99924 * 20 18 16 24 24 C 1.48145 * 104.32182 * 319.77502 * 15 14 12 25 25 C 1.53004 * 117.44085 * 154.99852 * 10 9 7 26 26 H 1.08998 * 119.54126 * 355.88693 * 25 10 9 27 27 H 1.07995 * 119.99638 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99870 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99870 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47615 * 59.99652 * 4 3 2 31 31 H 1.09001 * 109.47400 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47212 * 299.99942 * 4 3 2 33 33 H 1.08998 * 109.47219 * 60.00096 * 5 3 2 34 34 H 1.09001 * 109.46933 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47001 * 60.00260 * 6 5 3 36 36 H 1.09002 * 109.47275 * 180.02562 * 6 5 3 37 37 H 1.09008 * 109.47319 * 300.00230 * 6 5 3 38 38 H 0.97003 * 119.99910 * 0.02562 * 9 7 3 39 39 H 1.08997 * 110.92119 * 328.22429 * 14 12 10 40 40 H 1.09008 * 109.93320 * 205.88947 * 14 12 10 41 41 H 0.96999 * 120.00122 * 179.97438 * 19 18 16 42 42 H 1.09007 * 110.40557 * 280.80111 * 24 15 14 43 43 H 1.09002 * 110.40964 * 158.37109 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2493 6 6 3.9373 0.2233 -1.2493 7 6 2.9299 1.3849 1.2305 8 8 2.9354 0.4717 2.0286 9 7 3.6987 2.4711 1.4440 10 6 4.5414 2.5484 2.6399 11 1 4.6176 1.6294 3.2209 12 6 4.5542 3.8710 3.4091 13 1 3.8977 4.6821 3.0944 14 6 5.0839 3.8056 4.8930 15 7 6.5503 3.9807 4.7761 16 6 7.3766 4.7106 5.5883 17 1 6.9599 5.4396 6.2675 18 6 8.7498 4.5136 5.5385 19 7 9.2455 3.5047 4.8538 20 14 9.8941 5.6803 6.4434 21 1 9.0933 6.7240 7.1321 22 1 10.6845 4.9206 7.4451 23 1 10.8143 6.3239 5.4716 24 6 6.9200 3.1869 3.5812 25 6 5.7793 3.4452 2.5734 26 1 6.0352 3.9393 1.6361 27 1 -0.5399 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 0.4429 2.4101 0.8908 31 1 1.6142 3.4120 0.0011 32 1 0.4423 2.4105 -0.8891 33 1 2.3164 1.3285 -2.1392 34 1 3.4884 2.3300 -1.2490 35 1 3.3923 -0.7207 -1.2493 36 1 4.5643 0.2813 -2.1391 37 1 4.5641 0.2810 -0.3593 38 1 3.6941 3.2017 0.8059 39 1 4.8511 2.8426 5.3474 40 1 4.6499 4.6162 5.4786 41 1 10.2050 3.3673 4.8187 42 1 6.9740 2.1271 3.8307 43 1 7.8711 3.5315 3.1752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114792315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:07 Heat of formation + Delta-G solvation = 17.334996 kcal Electronic energy + Delta-G solvation = -21959.012692 eV Core-core repulsion = 18812.553236 eV Total energy + Delta-G solvation = -3146.459456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55366 -40.07062 -37.55800 -36.11096 -34.34967 -32.98318 -32.08839 -30.28424 -28.81788 -27.62996 -25.96177 -24.06410 -23.35442 -22.07336 -21.81515 -20.91971 -19.44133 -18.84593 -17.91035 -17.54827 -16.81531 -16.56110 -16.13967 -15.55724 -15.43203 -15.13668 -14.84823 -14.65081 -14.26898 -13.79539 -13.53756 -13.38502 -13.28682 -13.16433 -12.88607 -12.86118 -12.75237 -12.67222 -12.20386 -12.07929 -11.98604 -11.89112 -11.80136 -11.68676 -11.42619 -10.93411 -10.81349 -10.70501 -10.25194 -9.69867 -8.94577 -7.93389 -5.30600 1.30633 1.46827 1.47469 1.56466 1.58915 2.10382 2.47903 2.85733 3.27437 3.52834 3.61677 3.71503 3.81214 3.92283 3.95448 4.03972 4.06529 4.29349 4.34028 4.42667 4.49977 4.63967 4.67985 4.77517 4.81999 4.87777 4.96012 4.97148 5.05083 5.07131 5.17547 5.25888 5.28481 5.38789 5.40055 5.44091 5.53878 5.62438 5.72854 5.85568 6.14482 6.53588 6.98385 7.23926 7.65257 8.43954 9.20813 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038714 B = 0.003449 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.070141 B = 8116.999898 C = 8365.511834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C -0.044 4.044 4 C -0.144 4.144 5 C -0.103 4.103 6 C -0.160 4.160 7 C 0.526 3.474 8 O -0.584 6.584 9 N -0.681 5.681 10 C 0.113 3.887 11 H 0.099 0.901 12 C -0.163 4.163 13 H 0.142 0.858 14 C 0.148 3.852 15 N -0.617 5.617 16 C -0.242 4.242 17 H 0.084 0.916 18 C -0.063 4.063 19 N -0.948 5.948 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.289 1.289 24 C 0.190 3.810 25 C -0.178 4.178 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.027 0.973 38 H 0.416 0.584 39 H 0.018 0.982 40 H 0.063 0.937 41 H 0.250 0.750 42 H -0.007 1.007 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.485 -0.775 -16.047 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C -0.047 4.047 4 C -0.201 4.201 5 C -0.140 4.140 6 C -0.217 4.217 7 C 0.315 3.685 8 O -0.463 6.463 9 N -0.331 5.331 10 C 0.005 3.995 11 H 0.117 0.883 12 C -0.185 4.185 13 H 0.160 0.840 14 C 0.022 3.978 15 N -0.340 5.340 16 C -0.371 4.371 17 H 0.101 0.899 18 C -0.256 4.256 19 N -0.596 5.596 20 Si 0.811 3.189 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.215 1.215 24 C 0.064 3.936 25 C -0.199 4.199 26 H 0.144 0.856 27 H 0.125 0.875 28 H 0.137 0.863 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.253 0.747 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.010 0.990 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.248 -1.367 -15.393 23.158 hybrid contribution 1.235 0.242 0.615 1.401 sum -16.013 -1.125 -14.778 21.819 Atomic orbital electron populations 1.24177 0.95323 1.03398 0.99024 1.22520 0.96196 0.96500 1.01255 1.19999 0.95499 0.96835 0.92404 1.22002 0.98513 0.95738 1.03838 1.21611 0.97011 0.99587 0.95836 1.21870 0.99270 0.99181 1.01396 1.21168 0.79172 0.80772 0.87423 1.90684 1.67235 1.39429 1.48932 1.45212 1.43102 1.21318 1.23501 1.21385 0.93735 0.94905 0.89443 0.88314 1.24999 1.00757 0.98688 0.94018 0.84002 1.21827 0.84384 0.98172 0.93389 1.45428 1.02775 1.56665 1.29170 1.19446 0.88124 1.13283 1.16200 0.89863 1.25786 0.98650 0.99530 1.01665 1.70112 1.11570 1.30946 1.46948 0.84955 0.78454 0.78098 0.77434 1.18717 1.22009 1.21525 1.20780 0.95155 0.92095 0.85578 1.24298 0.90442 1.04508 1.00697 0.85573 0.87508 0.86260 0.88445 0.92398 0.90348 0.88586 0.88183 0.89841 0.92487 0.90872 0.95404 0.74672 0.96388 0.91883 0.94072 0.98955 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 13.70 67.77 0.93 -1.94 16 2 C -0.15 -2.91 7.29 25.64 0.19 -2.72 16 3 C -0.04 -0.80 0.63 -53.68 -0.03 -0.84 16 4 C -0.14 -1.76 7.02 71.98 0.51 -1.26 16 5 C -0.10 -1.45 4.89 30.59 0.15 -1.30 16 6 C -0.16 -2.96 9.41 71.98 0.68 -2.29 16 7 C 0.53 14.40 5.21 87.66 0.46 14.86 16 8 O -0.58 -22.01 15.60 -3.04 -0.05 -22.05 16 9 N -0.68 -17.14 5.35 -442.53 -2.37 -19.50 16 10 C 0.11 3.79 5.92 44.99 0.27 4.05 16 11 H 0.10 4.05 7.40 -2.39 -0.02 4.03 16 12 C -0.16 -5.55 7.34 -8.69 -0.06 -5.61 16 13 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 14 C 0.15 6.34 7.10 87.73 0.62 6.96 16 15 N -0.62 -32.48 3.38 -681.39 -2.30 -34.78 16 16 C -0.24 -13.69 10.35 84.03 0.87 -12.82 16 17 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 18 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 19 N -0.95 -57.63 10.88 21.65 0.24 -57.40 16 20 Si 0.98 45.56 29.56 68.60 2.03 47.59 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 24 C 0.19 9.56 5.70 86.54 0.49 10.05 16 25 C -0.18 -6.62 6.98 -9.88 -0.07 -6.69 16 26 H 0.13 4.05 8.14 -2.39 -0.02 4.03 16 27 H 0.11 1.47 8.06 -2.91 -0.02 1.45 16 28 H 0.12 1.45 5.69 -2.91 -0.02 1.43 16 29 H 0.10 2.23 7.00 -2.91 -0.02 2.21 16 30 H 0.06 0.83 7.50 -2.39 -0.02 0.81 16 31 H 0.08 0.74 7.56 -2.39 -0.02 0.73 16 32 H 0.10 0.75 7.50 -2.39 -0.02 0.73 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.95 7.57 -2.39 -0.02 0.94 16 35 H 0.06 1.07 6.62 -2.39 -0.02 1.05 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.03 0.67 7.22 -2.38 -0.02 0.66 16 38 H 0.42 7.44 7.66 -92.71 -0.71 6.73 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 42 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 43 H 0.06 3.32 6.53 -2.39 -0.02 3.30 16 Total: -1.00 -73.01 342.46 3.28 -69.73 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.28 Total: 19.08 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.45 Total: -2.67 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -4.43 Total: -111.68 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.01 3.28 -69.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114792315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.065 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds