Wall clock time and date at job start Tue Mar 31 2020 00:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 120.00083 * 2 1 4 4 C 1.52996 * 109.47180 * 124.99707 * 3 2 1 5 5 C 1.53002 * 109.46529 * 60.00226 * 4 3 2 6 6 C 1.52996 * 109.47223 * 300.00652 * 4 3 2 7 7 C 1.50694 * 109.47017 * 180.02562 * 4 3 2 8 8 O 1.21281 * 120.00576 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99831 * 180.02562 * 7 4 3 10 10 C 1.46498 * 120.00213 * 180.02562 * 9 7 4 11 11 H 1.08999 * 115.49297 * 9.61992 * 10 9 7 12 12 C 1.53002 * 117.44731 * 224.24302 * 10 9 7 13 13 H 1.08998 * 119.53671 * 4.11294 * 12 10 9 14 14 C 1.54790 * 117.94205 * 160.75426 * 12 10 9 15 15 N 1.48142 * 104.41509 * 87.46501 * 14 12 10 16 16 C 1.36941 * 127.83913 * 140.37064 * 15 14 12 17 17 H 1.08001 * 120.00294 * 195.57326 * 16 15 14 18 18 C 1.38818 * 119.99817 * 15.57284 * 16 15 14 19 19 N 1.31624 * 120.00001 * 9.17236 * 18 16 15 20 20 Si 1.86793 * 120.00024 * 189.17797 * 18 16 15 21 21 H 1.48493 * 109.47449 * 85.00062 * 20 18 16 22 22 H 1.48497 * 109.46969 * 324.99546 * 20 18 16 23 23 H 1.48500 * 109.47095 * 204.99927 * 20 18 16 24 24 C 1.48144 * 104.32599 * 320.10566 * 15 14 12 25 25 C 1.52997 * 117.44347 * 155.00090 * 10 9 7 26 26 H 1.08998 * 120.26587 * 356.17214 * 25 10 9 27 27 H 1.07995 * 119.99878 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99596 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00175 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47047 * 5.00127 * 3 2 1 31 31 H 1.08996 * 109.47044 * 245.00256 * 3 2 1 32 32 H 1.09012 * 109.46981 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47646 * 299.99715 * 5 4 3 34 34 H 1.08998 * 109.47166 * 60.00302 * 5 4 3 35 35 H 1.09004 * 109.46920 * 299.99528 * 6 4 3 36 36 H 1.08995 * 109.47837 * 59.99737 * 6 4 3 37 37 H 1.08998 * 109.47269 * 180.02562 * 6 4 3 38 38 H 0.96998 * 120.00362 * 0.02562 * 9 7 4 39 39 H 1.08999 * 110.53920 * 328.72416 * 14 12 10 40 40 H 1.08997 * 110.46222 * 206.16450 * 14 12 10 41 41 H 0.96996 * 119.99851 * 180.02562 * 19 18 16 42 42 H 1.09003 * 110.40812 * 158.63555 * 24 15 14 43 43 H 1.09006 * 110.41037 * 281.06321 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0245 0.1729 1.0558 6 6 2.2521 1.1962 2.4889 7 6 3.7881 2.6384 1.1820 8 8 3.5690 3.4652 0.3221 9 7 4.7051 2.8871 2.1379 10 6 5.4368 4.1563 2.1386 11 1 5.0721 4.9085 1.4391 12 6 6.9447 4.1008 2.3914 13 1 7.4372 3.1339 2.4939 14 6 7.7980 5.3175 1.9582 15 7 7.7548 6.2317 3.1232 16 6 8.7739 6.9910 3.6334 17 1 8.6873 7.4169 4.6221 18 6 9.9182 7.2134 2.8796 19 7 9.9537 6.8515 1.6146 20 14 11.4078 8.0259 3.6608 21 1 12.2308 6.9970 4.3455 22 1 10.9577 9.0384 4.6495 23 1 12.2190 8.6886 2.6081 24 6 6.3575 6.1431 3.6071 25 6 5.9938 4.6483 3.4759 26 1 5.7891 4.0958 4.3930 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 4.7170 0.1931 1.8975 33 1 3.4796 -0.7711 1.0558 34 1 4.5823 0.2705 0.1245 35 1 1.5472 2.0227 2.5785 36 1 1.7071 0.2522 2.4890 37 1 2.9442 1.2166 3.3308 38 1 4.8806 2.2258 2.8254 39 1 7.3624 5.7976 1.0820 40 1 8.8236 5.0103 1.7540 41 1 10.7534 7.0066 1.0881 42 1 6.2950 6.4596 4.6483 43 1 5.7003 6.7502 2.9844 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114895939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:14 Heat of formation + Delta-G solvation = 31.191722 kcal Electronic energy + Delta-G solvation = -21661.183975 eV Core-core repulsion = 18515.325391 eV Total energy + Delta-G solvation = -3145.858584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32977 -38.61508 -36.61405 -34.51766 -33.25223 -32.24961 -30.15352 -27.63378 -27.12449 -26.85516 -25.73678 -23.61051 -21.50489 -20.45262 -20.03479 -19.27389 -18.86402 -16.95463 -16.70236 -16.39273 -15.49042 -15.04845 -14.74278 -14.59795 -14.07120 -13.65947 -13.55444 -13.25366 -12.98854 -12.74376 -12.53157 -12.37212 -12.19342 -11.90453 -11.55468 -11.46416 -11.35464 -11.16325 -11.06045 -10.98485 -10.83064 -10.39504 -10.18248 -10.16494 -9.73975 -9.63143 -9.50631 -9.15275 -8.73970 -8.30524 -6.86969 -5.79505 -3.14218 2.03468 2.67513 3.15078 3.38657 3.43387 3.45468 4.30578 4.42056 4.47817 4.48390 4.65514 4.87679 4.97061 5.02427 5.16772 5.32336 5.37718 5.40451 5.47552 5.49051 5.54193 5.58451 5.63469 5.72608 5.82333 5.84226 5.90276 5.97694 6.00737 6.16450 6.26474 6.39790 6.52417 6.54591 6.68382 6.83703 6.89041 7.36514 7.53993 7.61401 7.71789 8.20737 8.32046 9.10829 9.73532 10.50747 11.34736 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.049454 B = 0.003079 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.049673 B = 9091.455388 C = 9202.333050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.072 4.072 4 C -0.076 4.076 5 C -0.143 4.143 6 C -0.139 4.139 7 C 0.524 3.476 8 O -0.537 6.537 9 N -0.696 5.696 10 C 0.098 3.902 11 H 0.131 0.869 12 C -0.182 4.182 13 H 0.101 0.899 14 C 0.186 3.814 15 N -0.593 5.593 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.915 5.915 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.280 1.280 23 H -0.290 1.290 24 C 0.156 3.844 25 C -0.184 4.184 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.397 0.603 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.052 0.948 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.465 -15.818 0.636 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C -0.109 4.109 4 C -0.079 4.079 5 C -0.200 4.200 6 C -0.197 4.197 7 C 0.310 3.690 8 O -0.414 6.414 9 N -0.344 5.344 10 C -0.008 4.008 11 H 0.148 0.852 12 C -0.203 4.203 13 H 0.119 0.881 14 C 0.060 3.940 15 N -0.316 5.316 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.561 5.561 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.206 1.206 23 H -0.216 1.216 24 C 0.029 3.971 25 C -0.205 4.205 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.231 0.769 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.363 -15.071 -0.038 21.521 hybrid contribution 0.928 -0.079 0.799 1.228 sum -14.435 -15.150 0.762 20.940 Atomic orbital electron populations 1.23856 0.95954 1.01763 1.01803 1.22970 0.95946 0.98363 0.99240 1.20603 0.97474 0.95448 0.97407 1.20747 0.96050 0.93288 0.97855 1.21919 0.98298 0.97017 1.02779 1.21871 1.00117 1.02919 0.94776 1.20481 0.79276 0.88330 0.80960 1.90703 1.65648 1.47939 1.37074 1.45393 1.39963 1.18909 1.30121 1.21845 0.92199 0.87056 0.99693 0.85159 1.24806 0.90659 1.01464 1.03381 0.88082 1.21128 0.98614 0.85275 0.89029 1.45191 1.04555 1.48625 1.33269 1.18987 0.93962 1.24773 0.97894 0.90527 1.24918 0.99358 1.00668 0.95351 1.69900 1.28237 1.51938 1.05985 0.86114 0.82588 0.78885 0.78020 1.21469 1.20587 1.21618 1.21120 0.87800 0.90266 0.97937 1.24303 1.04629 0.99499 0.92109 0.87936 0.88645 0.88588 0.87257 0.90656 0.90096 0.92076 0.91209 0.91790 0.92021 0.91205 0.92181 0.76869 0.95572 0.89124 0.93493 0.92983 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.45 14.32 29.01 0.42 -1.03 16 2 C -0.15 -1.16 7.65 -36.03 -0.28 -1.43 16 3 C -0.07 -0.72 4.02 -27.88 -0.11 -0.83 16 4 C -0.08 -0.75 0.64 -155.67 -0.10 -0.85 16 5 C -0.14 -1.16 8.11 37.16 0.30 -0.86 16 6 C -0.14 -1.13 8.12 37.16 0.30 -0.83 16 7 C 0.52 7.34 6.48 -10.99 -0.07 7.27 16 8 O -0.54 -9.82 15.55 5.56 0.09 -9.73 16 9 N -0.70 -9.37 5.35 -53.81 -0.29 -9.66 16 10 C 0.10 1.67 5.97 -67.93 -0.41 1.27 16 11 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 12 C -0.18 -3.48 7.08 -89.00 -0.63 -4.11 16 13 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 14 C 0.19 4.54 5.72 -2.20 -0.01 4.53 16 15 N -0.59 -15.32 3.37 -168.61 -0.57 -15.89 16 16 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16 17 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 18 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 19 N -0.91 -27.00 10.87 55.49 0.60 -26.39 16 20 Si 0.91 21.98 29.56 -169.99 -5.03 16.95 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.16 3.30 7.03 -2.41 -0.02 3.28 16 25 C -0.18 -3.26 7.06 -89.22 -0.63 -3.89 16 26 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16 28 H 0.10 0.72 7.84 -52.48 -0.41 0.30 16 29 H 0.11 0.73 6.81 -52.49 -0.36 0.37 16 30 H 0.07 0.84 7.75 -51.93 -0.40 0.43 16 31 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.06 0.45 7.56 -51.92 -0.39 0.06 16 33 H 0.07 0.44 6.53 -51.93 -0.34 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.48 7.22 -51.93 -0.37 0.11 16 37 H 0.06 0.44 7.56 -51.93 -0.39 0.04 16 38 H 0.40 4.24 7.66 -40.82 -0.31 3.92 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 2.46 6.52 -51.93 -0.34 2.12 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.83 346.12 -8.52 -40.35 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.06 Total: 3.45 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.48 Total: -4.29 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.25 Total: -51.94 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.83 -8.52 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114895939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.543 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds