Wall clock time and date at job start Tue Mar 31 2020 00:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 120.00083 * 2 1 4 4 C 1.52996 * 109.47180 * 124.99707 * 3 2 1 5 5 C 1.53002 * 109.46529 * 60.00226 * 4 3 2 6 6 C 1.52996 * 109.47223 * 300.00652 * 4 3 2 7 7 C 1.50694 * 109.47017 * 180.02562 * 4 3 2 8 8 O 1.21281 * 120.00576 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99831 * 180.02562 * 7 4 3 10 10 C 1.46498 * 120.00213 * 180.02562 * 9 7 4 11 11 H 1.08999 * 115.49297 * 9.61992 * 10 9 7 12 12 C 1.53002 * 117.44731 * 224.24302 * 10 9 7 13 13 H 1.08998 * 119.53671 * 4.11294 * 12 10 9 14 14 C 1.54790 * 117.94205 * 160.75426 * 12 10 9 15 15 N 1.48142 * 104.41509 * 87.46501 * 14 12 10 16 16 C 1.36941 * 127.83913 * 140.37064 * 15 14 12 17 17 H 1.08001 * 120.00294 * 195.57326 * 16 15 14 18 18 C 1.38818 * 119.99817 * 15.57284 * 16 15 14 19 19 N 1.31624 * 120.00001 * 9.17236 * 18 16 15 20 20 Si 1.86793 * 120.00024 * 189.17797 * 18 16 15 21 21 H 1.48493 * 109.47449 * 85.00062 * 20 18 16 22 22 H 1.48497 * 109.46969 * 324.99546 * 20 18 16 23 23 H 1.48500 * 109.47095 * 204.99927 * 20 18 16 24 24 C 1.48144 * 104.32599 * 320.10566 * 15 14 12 25 25 C 1.52997 * 117.44347 * 155.00090 * 10 9 7 26 26 H 1.08998 * 120.26587 * 356.17214 * 25 10 9 27 27 H 1.07995 * 119.99878 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99596 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.00175 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47047 * 5.00127 * 3 2 1 31 31 H 1.08996 * 109.47044 * 245.00256 * 3 2 1 32 32 H 1.09012 * 109.46981 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47646 * 299.99715 * 5 4 3 34 34 H 1.08998 * 109.47166 * 60.00302 * 5 4 3 35 35 H 1.09004 * 109.46920 * 299.99528 * 6 4 3 36 36 H 1.08995 * 109.47837 * 59.99737 * 6 4 3 37 37 H 1.08998 * 109.47269 * 180.02562 * 6 4 3 38 38 H 0.96998 * 120.00362 * 0.02562 * 9 7 4 39 39 H 1.08999 * 110.53920 * 328.72416 * 14 12 10 40 40 H 1.08997 * 110.46222 * 206.16450 * 14 12 10 41 41 H 0.96996 * 119.99851 * 180.02562 * 19 18 16 42 42 H 1.09003 * 110.40812 * 158.63555 * 24 15 14 43 43 H 1.09006 * 110.41037 * 281.06321 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0245 0.1729 1.0558 6 6 2.2521 1.1962 2.4889 7 6 3.7881 2.6384 1.1820 8 8 3.5690 3.4652 0.3221 9 7 4.7051 2.8871 2.1379 10 6 5.4368 4.1563 2.1386 11 1 5.0721 4.9085 1.4391 12 6 6.9447 4.1008 2.3914 13 1 7.4372 3.1339 2.4939 14 6 7.7980 5.3175 1.9582 15 7 7.7548 6.2317 3.1232 16 6 8.7739 6.9910 3.6334 17 1 8.6873 7.4169 4.6221 18 6 9.9182 7.2134 2.8796 19 7 9.9537 6.8515 1.6146 20 14 11.4078 8.0259 3.6608 21 1 12.2308 6.9970 4.3455 22 1 10.9577 9.0384 4.6495 23 1 12.2190 8.6886 2.6081 24 6 6.3575 6.1431 3.6071 25 6 5.9938 4.6483 3.4759 26 1 5.7891 4.0958 4.3930 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 4.7170 0.1931 1.8975 33 1 3.4796 -0.7711 1.0558 34 1 4.5823 0.2705 0.1245 35 1 1.5472 2.0227 2.5785 36 1 1.7071 0.2522 2.4890 37 1 2.9442 1.2166 3.3308 38 1 4.8806 2.2258 2.8254 39 1 7.3624 5.7976 1.0820 40 1 8.8236 5.0103 1.7540 41 1 10.7534 7.0066 1.0881 42 1 6.2950 6.4596 4.6483 43 1 5.7003 6.7502 2.9844 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114895939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:13 Heat of formation + Delta-G solvation = 11.392965 kcal Electronic energy + Delta-G solvation = -21662.042513 eV Core-core repulsion = 18515.325391 eV Total energy + Delta-G solvation = -3146.717122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49469 -40.12683 -37.55808 -36.11953 -34.54278 -33.46433 -31.92492 -28.92662 -28.25734 -27.74261 -27.48521 -24.82515 -23.06791 -21.98298 -21.04909 -20.85478 -19.74094 -18.87681 -17.86602 -17.63753 -16.77828 -16.30421 -15.99372 -15.79250 -15.43495 -14.93805 -14.85151 -14.66460 -14.30182 -13.78770 -13.70771 -13.35043 -13.32803 -13.19766 -12.96181 -12.88596 -12.70822 -12.58664 -12.15382 -12.06727 -12.04430 -11.89450 -11.82411 -11.80808 -11.67258 -10.88469 -10.78449 -10.64195 -10.15155 -9.71859 -8.94628 -7.92929 -5.30635 1.43415 1.46301 1.48807 1.53524 1.57341 1.98477 2.47826 2.83279 3.26942 3.49246 3.62388 3.75899 3.81998 3.91746 3.92410 4.11217 4.21564 4.26652 4.36563 4.37518 4.48880 4.74909 4.75705 4.81011 4.84629 4.90959 4.92907 4.97080 4.98407 5.11812 5.16409 5.26323 5.31239 5.36069 5.40172 5.43919 5.53590 5.62197 5.79532 5.95899 6.14729 6.51774 6.98099 7.21961 7.65493 8.44043 9.20961 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.049454 B = 0.003079 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.049673 B = 9091.455388 C = 9202.333050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C -0.072 4.072 4 C -0.066 4.066 5 C -0.142 4.142 6 C -0.136 4.136 7 C 0.519 3.481 8 O -0.587 6.587 9 N -0.680 5.680 10 C 0.116 3.884 11 H 0.101 0.899 12 C -0.186 4.186 13 H 0.123 0.877 14 C 0.189 3.811 15 N -0.617 5.617 16 C -0.242 4.242 17 H 0.085 0.915 18 C -0.065 4.065 19 N -0.950 5.950 20 Si 0.984 3.016 21 H -0.281 1.281 22 H -0.267 1.267 23 H -0.296 1.296 24 C 0.147 3.853 25 C -0.158 4.158 26 H 0.142 0.858 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.417 0.583 39 H -0.008 1.008 40 H 0.058 0.942 41 H 0.250 0.750 42 H 0.068 0.932 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.497 -18.293 2.897 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.169 4.169 3 C -0.109 4.109 4 C -0.069 4.069 5 C -0.199 4.199 6 C -0.194 4.194 7 C 0.307 3.693 8 O -0.466 6.466 9 N -0.330 5.330 10 C 0.009 3.991 11 H 0.119 0.881 12 C -0.207 4.207 13 H 0.141 0.859 14 C 0.063 3.937 15 N -0.341 5.341 16 C -0.370 4.370 17 H 0.103 0.897 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.812 3.188 21 H -0.208 1.208 22 H -0.192 1.192 23 H -0.222 1.222 24 C 0.021 3.979 25 C -0.179 4.179 26 H 0.160 0.840 27 H 0.133 0.867 28 H 0.107 0.893 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.255 0.745 39 H 0.010 0.990 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -16.431 -17.584 2.270 24.173 hybrid contribution 1.147 0.747 0.031 1.370 sum -15.283 -16.837 2.301 22.855 Atomic orbital electron populations 1.24017 0.95896 1.02404 1.00585 1.22917 0.96031 0.97658 1.00260 1.20556 0.97222 0.96389 0.96768 1.20758 0.96064 0.91214 0.98913 1.21963 0.98166 0.97085 1.02686 1.21891 1.00113 1.03534 0.93837 1.21396 0.78799 0.89306 0.79800 1.90690 1.67064 1.49902 1.38961 1.45201 1.39225 1.17845 1.30692 1.21360 0.90836 0.88132 0.98762 0.88145 1.24479 0.91134 1.00207 1.04917 0.85888 1.20836 0.97538 0.87165 0.88138 1.45500 1.06138 1.48947 1.33470 1.19420 0.94688 1.24615 0.98283 0.89715 1.25820 1.02330 1.01864 0.95838 1.70115 1.28648 1.53535 1.07460 0.85017 0.78702 0.78073 0.77045 1.20793 1.19156 1.22248 1.21284 0.85460 0.92759 0.98357 1.24221 1.03069 0.97125 0.93473 0.84019 0.86737 0.89264 0.85316 0.92538 0.92068 0.90774 0.88652 0.93100 0.93154 0.89200 0.90636 0.74543 0.99035 0.92406 0.94104 0.91402 0.96535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 14.32 67.77 0.97 -1.42 16 2 C -0.15 -2.03 7.65 25.64 0.20 -1.83 16 3 C -0.07 -1.40 4.02 29.85 0.12 -1.28 16 4 C -0.07 -1.19 0.64 -52.93 -0.03 -1.22 16 5 C -0.14 -1.88 8.11 71.98 0.58 -1.29 16 6 C -0.14 -1.79 8.12 71.98 0.58 -1.20 16 7 C 0.52 14.17 6.48 87.65 0.57 14.73 16 8 O -0.59 -22.11 15.55 -3.03 -0.05 -22.15 16 9 N -0.68 -17.00 5.35 -442.54 -2.37 -19.37 16 10 C 0.12 3.91 5.97 44.99 0.27 4.17 16 11 H 0.10 4.08 7.40 -2.39 -0.02 4.06 16 12 C -0.19 -7.03 7.08 -9.75 -0.07 -7.10 16 13 H 0.12 4.13 8.14 -2.39 -0.02 4.12 16 14 C 0.19 9.66 5.72 86.67 0.50 10.16 16 15 N -0.62 -32.43 3.37 -687.35 -2.32 -34.75 16 16 C -0.24 -13.64 10.35 84.03 0.87 -12.77 16 17 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 18 C -0.07 -3.73 5.40 84.86 0.46 -3.27 16 19 N -0.95 -58.27 10.87 21.65 0.24 -58.04 16 20 Si 0.98 45.72 29.56 68.60 2.03 47.75 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 24 C 0.15 6.17 7.03 86.54 0.61 6.77 16 25 C -0.16 -5.28 7.06 -9.89 -0.07 -5.35 16 26 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 27 H 0.11 1.01 8.06 -2.91 -0.02 0.99 16 28 H 0.09 1.22 7.84 -2.91 -0.02 1.20 16 29 H 0.13 1.25 6.81 -2.91 -0.02 1.23 16 30 H 0.06 1.29 7.75 -2.38 -0.02 1.27 16 31 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 32 H 0.07 0.80 7.56 -2.38 -0.02 0.79 16 33 H 0.09 0.81 6.53 -2.39 -0.02 0.80 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.09 0.87 7.22 -2.39 -0.02 0.85 16 37 H 0.07 0.77 7.56 -2.39 -0.02 0.75 16 38 H 0.42 7.32 7.66 -92.71 -0.71 6.61 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.06 3.30 6.52 -2.39 -0.02 3.28 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -72.99 346.12 3.36 -69.63 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.27 Total: 17.84 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 5.55 Total: -0.91 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -4.45 Total: -112.15 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.99 3.36 -69.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114895939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.024 kcal (2) G-P(sol) polarization free energy of solvation -72.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds