Wall clock time and date at job start Tue Mar 31 2020 00:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46729 * 2 1 4 4 C 1.52996 * 109.47551 * 239.99913 * 2 1 3 5 5 C 1.53005 * 109.46867 * 119.99614 * 2 1 3 6 6 C 1.52996 * 109.46885 * 54.37199 * 5 2 1 7 7 H 1.09000 * 109.47293 * 306.75491 * 6 5 2 8 8 C 1.53001 * 109.47161 * 186.75673 * 6 5 2 9 9 O 1.42902 * 109.46830 * 305.00199 * 8 6 5 10 10 N 1.46502 * 109.47616 * 66.75628 * 6 5 2 11 11 C 1.38815 * 120.00104 * 204.99978 * 10 6 5 12 12 C 1.39797 * 119.58762 * 0.02562 * 11 10 6 13 13 C 1.38599 * 119.49383 * 179.97438 * 12 11 10 14 14 C 1.38384 * 118.67650 * 0.02562 * 13 12 11 15 15 C 1.40558 * 119.15418 * 359.97438 * 14 13 12 16 16 C 1.41311 * 119.78559 * 180.27918 * 15 14 13 17 17 H 1.08003 * 120.00209 * 359.72855 * 16 15 14 18 18 C 1.40021 * 120.00318 * 179.72902 * 16 15 14 19 19 N 1.30748 * 119.99963 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00391 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46893 * 60.00021 * 20 18 16 22 22 H 1.48507 * 109.47312 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47138 * 299.99819 * 20 18 16 24 24 N 1.31959 * 119.58372 * 179.97438 * 11 10 6 25 25 H 1.09000 * 109.47414 * 299.99850 * 1 2 3 26 26 H 1.09004 * 109.47067 * 60.00605 * 1 2 3 27 27 H 1.09008 * 109.46613 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47126 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47369 * 299.99574 * 3 2 1 30 30 H 1.09005 * 109.47431 * 60.00131 * 3 2 1 31 31 H 1.09002 * 109.47272 * 308.47278 * 4 2 1 32 32 H 1.09002 * 109.47026 * 68.46505 * 4 2 1 33 33 H 1.08999 * 109.47320 * 188.46629 * 4 2 1 34 34 H 1.09000 * 109.47274 * 294.36776 * 5 2 1 35 35 H 1.08994 * 109.46734 * 174.36673 * 5 2 1 36 36 H 1.08997 * 109.47079 * 64.99638 * 8 6 5 37 37 H 1.08997 * 109.47445 * 185.00045 * 8 6 5 38 38 H 0.96701 * 114.00015 * 180.02562 * 9 8 6 39 39 H 0.97003 * 119.99729 * 24.99667 * 10 6 5 40 40 H 1.08004 * 120.25346 * 359.95736 * 12 11 10 41 41 H 1.07999 * 120.65854 * 179.97438 * 13 12 11 42 42 H 1.08006 * 120.42336 * 180.02562 * 14 13 12 43 43 H 0.97003 * 120.00642 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.4177 -2.1170 1.3221 7 1 0.3331 -2.0355 1.2501 8 6 1.7926 -2.7738 2.6521 9 8 3.2141 -2.7753 2.7987 10 7 1.9205 -2.9343 0.2151 11 6 1.1707 -4.0040 -0.2543 12 6 -0.0634 -4.2934 0.3353 13 6 -0.8107 -5.3617 -0.1352 14 6 -0.3074 -6.1143 -1.1818 15 6 0.9398 -5.7732 -1.7328 16 6 1.4636 -6.5291 -2.8057 17 1 0.9079 -7.3685 -3.1969 18 6 2.7031 -6.1898 -3.3617 19 7 3.3757 -5.1733 -2.8885 20 14 3.3952 -7.1885 -4.7805 21 1 2.4578 -7.1297 -5.9309 22 1 4.7100 -6.6288 -5.1850 23 1 3.5677 -8.6004 -4.3542 24 7 1.6313 -4.7344 -1.2522 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.5585 -1.6959 -1.3282 32 1 1.8056 -0.1275 -2.1327 33 1 3.1196 -0.8541 -1.1767 34 1 1.7613 -0.1524 2.1364 35 1 3.1253 -0.8094 1.2003 36 1 1.3433 -2.2146 3.4728 37 1 1.4247 -3.7997 2.6672 38 1 3.5242 -3.1780 3.6213 39 1 2.7775 -2.7278 -0.1899 40 1 -0.4315 -3.6894 1.1515 41 1 -1.7663 -5.6023 0.3067 42 1 -0.8664 -6.9526 -1.5708 43 1 4.2342 -4.9380 -3.2739 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:35 Heat of formation + Delta-G solvation = -20.509782 kcal Electronic energy + Delta-G solvation = -22772.462512 eV Core-core repulsion = 19624.361983 eV Total energy + Delta-G solvation = -3148.100529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.19886 -37.63018 -36.28561 -34.30171 -33.09741 -30.75709 -29.91437 -27.98369 -27.13281 -26.75017 -25.79681 -25.18380 -21.66606 -21.29400 -19.84975 -18.57412 -17.47938 -17.03450 -16.06817 -15.19713 -14.96261 -14.74379 -14.51240 -14.17962 -13.87522 -13.67504 -13.24965 -12.96903 -12.68904 -12.48146 -12.24026 -11.91598 -11.87149 -11.58670 -11.41327 -11.21022 -11.13431 -10.98929 -10.95855 -10.59801 -10.44610 -10.33543 -10.23311 -10.10331 -9.87662 -9.66885 -9.36783 -8.71892 -7.85340 -7.43831 -6.37665 -6.26953 -4.42615 2.93224 3.13402 3.15927 3.29194 3.34728 4.02191 4.24598 4.60360 4.85575 4.91153 5.04899 5.09547 5.47367 5.52147 5.62019 5.65266 5.76857 5.84641 5.93493 5.99709 6.01223 6.07896 6.15639 6.19536 6.19992 6.33954 6.35877 6.40455 6.56436 6.61118 6.70621 6.90934 6.94371 6.98344 7.02982 7.31176 7.65457 7.84119 7.87608 7.98793 8.22725 8.44799 8.78582 8.86202 9.19391 10.30926 10.46342 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.005553 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.472577 B = 5041.197409 C = 5514.307117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.154 4.154 5 C -0.107 4.107 6 C 0.164 3.836 7 H 0.092 0.908 8 C 0.057 3.943 9 O -0.564 6.564 10 N -0.718 5.718 11 C 0.414 3.586 12 C -0.373 4.373 13 C -0.031 4.031 14 C -0.320 4.320 15 C 0.294 3.706 16 C -0.435 4.435 17 H 0.081 0.919 18 C 0.072 3.928 19 N -0.713 5.713 20 Si 0.903 3.097 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 N -0.531 5.531 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.051 0.949 38 H 0.369 0.631 39 H 0.399 0.601 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 9.094 7.521 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.211 4.211 5 C -0.145 4.145 6 C 0.057 3.943 7 H 0.110 0.890 8 C -0.023 4.023 9 O -0.367 6.367 10 N -0.355 5.355 11 C 0.174 3.826 12 C -0.399 4.399 13 C -0.056 4.056 14 C -0.343 4.343 15 C 0.167 3.833 16 C -0.467 4.467 17 H 0.099 0.901 18 C -0.153 4.153 19 N -0.334 5.334 20 Si 0.728 3.272 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 N -0.252 5.252 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.215 0.785 39 H 0.236 0.764 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.324 9.763 6.653 11.819 hybrid contribution -0.237 -0.879 0.286 0.955 sum -0.560 8.883 6.939 11.286 Atomic orbital electron populations 1.21961 0.95037 1.02323 1.00842 1.20508 0.95426 0.94681 0.95989 1.21876 1.00809 0.95905 1.01030 1.22255 1.01032 1.02530 0.95279 1.21781 1.01422 0.94233 0.97092 1.20901 0.98877 0.89563 0.84993 0.89038 1.22888 0.81451 1.00215 0.97701 1.86522 1.21723 1.83943 1.44557 1.44408 1.23226 1.31109 1.36772 1.18551 0.87238 0.86902 0.89925 1.20599 1.00401 1.07849 1.11057 1.20571 0.96463 0.93832 0.94713 1.21511 1.01279 1.06186 1.05310 1.18181 0.87154 0.87727 0.90262 1.19530 1.02395 1.12074 1.12707 0.90093 1.26026 0.96933 0.94870 0.97498 1.70141 1.10055 1.19953 1.33256 0.86470 0.78467 0.80709 0.81579 1.19080 1.20385 1.19084 1.68244 1.34298 1.09308 1.13353 0.93313 0.93109 0.91684 0.92921 0.93015 0.93240 0.89032 0.94114 0.93218 0.91662 0.90858 0.94295 0.93056 0.78525 0.76365 0.89431 0.89193 0.88930 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.97 37.16 0.30 -1.61 16 2 C -0.07 -0.89 0.80 -154.51 -0.12 -1.01 16 3 C -0.14 -1.61 8.46 37.16 0.31 -1.30 16 4 C -0.15 -2.49 7.04 37.16 0.26 -2.23 16 5 C -0.11 -1.46 3.65 -26.73 -0.10 -1.56 16 6 C 0.16 2.58 1.72 -67.93 -0.12 2.46 16 7 H 0.09 1.45 4.24 -51.93 -0.22 1.23 16 8 C 0.06 0.83 6.76 37.16 0.25 1.08 16 9 O -0.56 -8.26 12.86 -35.23 -0.45 -8.71 16 10 N -0.72 -14.22 2.87 -53.90 -0.15 -14.37 16 11 C 0.41 9.89 7.22 -155.33 -1.12 8.77 16 12 C -0.37 -8.42 8.84 -38.87 -0.34 -8.77 16 13 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 14 C -0.32 -8.14 9.83 -38.65 -0.38 -8.52 16 15 C 0.29 8.21 6.55 -85.00 -0.56 7.65 16 16 C -0.43 -11.89 9.14 -37.75 -0.34 -12.23 16 17 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 18 C 0.07 1.86 5.50 -17.35 -0.10 1.77 16 19 N -0.71 -19.07 11.46 55.55 0.64 -18.44 16 20 Si 0.90 18.99 29.56 -169.99 -5.02 13.96 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 N -0.53 -14.55 7.89 -10.33 -0.08 -14.63 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.98 6.19 -51.92 -0.32 0.66 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.80 5.42 -51.93 -0.28 1.51 16 32 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.05 0.81 7.79 -51.93 -0.40 0.40 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.09 7.77 -51.93 -0.40 0.68 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.84 7.76 -51.93 -0.40 0.44 16 38 H 0.37 3.77 9.12 45.56 0.42 4.19 16 39 H 0.40 8.38 7.18 -40.82 -0.29 8.09 16 40 H 0.09 1.74 6.15 -52.48 -0.32 1.42 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 43 H 0.27 6.62 8.29 -40.82 -0.34 6.28 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -29.73 338.56 -8.44 -38.17 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -6.01 Total: 15.54 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.46 Total: -16.62 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.40 Total: -47.44 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.45 Total: -8.71 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.73 -8.44 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.662 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds