Wall clock time and date at job start Tue Mar 31 2020 00:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46729 * 2 1 4 4 C 1.52996 * 109.47551 * 239.99913 * 2 1 3 5 5 C 1.53005 * 109.46867 * 119.99614 * 2 1 3 6 6 C 1.52996 * 109.46885 * 54.37199 * 5 2 1 7 7 H 1.09000 * 109.47293 * 306.75491 * 6 5 2 8 8 C 1.53001 * 109.47161 * 186.75673 * 6 5 2 9 9 O 1.42902 * 109.46830 * 305.00199 * 8 6 5 10 10 N 1.46502 * 109.47616 * 66.75628 * 6 5 2 11 11 C 1.38815 * 120.00104 * 204.99978 * 10 6 5 12 12 C 1.39797 * 119.58762 * 0.02562 * 11 10 6 13 13 C 1.38599 * 119.49383 * 179.97438 * 12 11 10 14 14 C 1.38384 * 118.67650 * 0.02562 * 13 12 11 15 15 C 1.40558 * 119.15418 * 359.97438 * 14 13 12 16 16 C 1.41311 * 119.78559 * 180.27918 * 15 14 13 17 17 H 1.08003 * 120.00209 * 359.72855 * 16 15 14 18 18 C 1.40021 * 120.00318 * 179.72902 * 16 15 14 19 19 N 1.30748 * 119.99963 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00391 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46893 * 60.00021 * 20 18 16 22 22 H 1.48507 * 109.47312 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47138 * 299.99819 * 20 18 16 24 24 N 1.31959 * 119.58372 * 179.97438 * 11 10 6 25 25 H 1.09000 * 109.47414 * 299.99850 * 1 2 3 26 26 H 1.09004 * 109.47067 * 60.00605 * 1 2 3 27 27 H 1.09008 * 109.46613 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47126 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47369 * 299.99574 * 3 2 1 30 30 H 1.09005 * 109.47431 * 60.00131 * 3 2 1 31 31 H 1.09002 * 109.47272 * 308.47278 * 4 2 1 32 32 H 1.09002 * 109.47026 * 68.46505 * 4 2 1 33 33 H 1.08999 * 109.47320 * 188.46629 * 4 2 1 34 34 H 1.09000 * 109.47274 * 294.36776 * 5 2 1 35 35 H 1.08994 * 109.46734 * 174.36673 * 5 2 1 36 36 H 1.08997 * 109.47079 * 64.99638 * 8 6 5 37 37 H 1.08997 * 109.47445 * 185.00045 * 8 6 5 38 38 H 0.96701 * 114.00015 * 180.02562 * 9 8 6 39 39 H 0.97003 * 119.99729 * 24.99667 * 10 6 5 40 40 H 1.08004 * 120.25346 * 359.95736 * 12 11 10 41 41 H 1.07999 * 120.65854 * 179.97438 * 13 12 11 42 42 H 1.08006 * 120.42336 * 180.02562 * 14 13 12 43 43 H 0.97003 * 120.00642 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.4177 -2.1170 1.3221 7 1 0.3331 -2.0355 1.2501 8 6 1.7926 -2.7738 2.6521 9 8 3.2141 -2.7753 2.7987 10 7 1.9205 -2.9343 0.2151 11 6 1.1707 -4.0040 -0.2543 12 6 -0.0634 -4.2934 0.3353 13 6 -0.8107 -5.3617 -0.1352 14 6 -0.3074 -6.1143 -1.1818 15 6 0.9398 -5.7732 -1.7328 16 6 1.4636 -6.5291 -2.8057 17 1 0.9079 -7.3685 -3.1969 18 6 2.7031 -6.1898 -3.3617 19 7 3.3757 -5.1733 -2.8885 20 14 3.3952 -7.1885 -4.7805 21 1 2.4578 -7.1297 -5.9309 22 1 4.7100 -6.6288 -5.1850 23 1 3.5677 -8.6004 -4.3542 24 7 1.6313 -4.7344 -1.2522 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.5585 -1.6959 -1.3282 32 1 1.8056 -0.1275 -2.1327 33 1 3.1196 -0.8541 -1.1767 34 1 1.7613 -0.1524 2.1364 35 1 3.1253 -0.8094 1.2003 36 1 1.3433 -2.2146 3.4728 37 1 1.4247 -3.7997 2.6672 38 1 3.5242 -3.1780 3.6213 39 1 2.7775 -2.7278 -0.1899 40 1 -0.4315 -3.6894 1.1515 41 1 -1.7663 -5.6023 0.3067 42 1 -0.8664 -6.9526 -1.5708 43 1 4.2342 -4.9380 -3.2739 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:34 Heat of formation + Delta-G solvation = -39.028772 kcal Electronic energy + Delta-G solvation = -22773.265556 eV Core-core repulsion = 19624.361983 eV Total energy + Delta-G solvation = -3148.903573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.65525 -39.26792 -37.41157 -35.93542 -34.85175 -32.46159 -31.64472 -29.63385 -28.17737 -28.00180 -27.22387 -26.78191 -23.39753 -23.00331 -21.39845 -19.76857 -19.19116 -18.40623 -17.75794 -16.65437 -16.46181 -16.26173 -16.11054 -15.44435 -15.30350 -15.00274 -14.63436 -14.60362 -14.21688 -13.94863 -13.70949 -13.31438 -13.03252 -12.96439 -12.79649 -12.70203 -12.52873 -12.51336 -12.42732 -12.26455 -12.07650 -11.73468 -11.50733 -11.41076 -11.29194 -11.13823 -10.81442 -10.44345 -9.77417 -9.37163 -8.18495 -8.12410 -6.44397 1.11107 1.40724 1.40756 1.52429 1.60236 2.25663 2.72877 2.96102 3.51969 3.74936 3.93823 4.00207 4.11199 4.31668 4.38791 4.40120 4.53957 4.54695 4.71387 4.72546 4.82772 4.84521 4.91310 4.96163 4.98241 5.03116 5.04452 5.10316 5.17018 5.20104 5.24545 5.31190 5.40466 5.46541 5.58593 5.64991 5.76935 6.01154 6.14090 6.26356 6.64071 6.89127 6.94375 7.02597 7.30142 8.40842 8.55608 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.005553 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.472577 B = 5041.197409 C = 5514.307117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.134 4.134 4 C -0.147 4.147 5 C -0.097 4.097 6 C 0.156 3.844 7 H 0.095 0.905 8 C 0.061 3.939 9 O -0.582 6.582 10 N -0.710 5.710 11 C 0.402 3.598 12 C -0.367 4.367 13 C -0.030 4.030 14 C -0.350 4.350 15 C 0.261 3.739 16 C -0.474 4.474 17 H 0.083 0.917 18 C 0.027 3.973 19 N -0.749 5.749 20 Si 0.982 3.018 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.261 1.261 24 N -0.565 5.565 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.389 0.611 39 H 0.390 0.610 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 10.558 8.944 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.191 4.191 4 C -0.205 4.205 5 C -0.135 4.135 6 C 0.050 3.950 7 H 0.112 0.888 8 C -0.018 4.018 9 O -0.389 6.389 10 N -0.344 5.344 11 C 0.161 3.839 12 C -0.393 4.393 13 C -0.054 4.054 14 C -0.373 4.373 15 C 0.134 3.866 16 C -0.506 4.506 17 H 0.101 0.899 18 C -0.194 4.194 19 N -0.371 5.371 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.194 1.194 23 H -0.185 1.185 24 N -0.288 5.288 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.237 0.763 39 H 0.226 0.774 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.116 0.884 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.692 11.255 8.134 13.904 hybrid contribution -0.168 -1.229 -0.025 1.241 sum -0.860 10.026 8.109 12.923 Atomic orbital electron populations 1.21921 0.94517 1.01194 1.02165 1.20490 0.95759 0.95694 0.94322 1.21822 1.00800 0.94274 1.02237 1.22159 1.00138 1.00975 0.97240 1.21721 1.00405 0.93076 0.98274 1.21235 0.99163 0.90285 0.84277 0.88754 1.22797 0.81694 0.99304 0.97995 1.86477 1.21813 1.84266 1.46316 1.44554 1.22297 1.30179 1.37362 1.18950 0.88213 0.87355 0.89378 1.20937 0.99594 1.07630 1.11134 1.20978 0.97680 0.93087 0.93650 1.21649 1.01221 1.07511 1.06935 1.18640 0.88404 0.88437 0.91111 1.19873 1.03865 1.12970 1.13927 0.89883 1.26906 0.96657 0.95845 1.00041 1.70255 1.10502 1.21503 1.34814 0.85274 0.77807 0.78908 0.77706 1.18491 1.19400 1.18489 1.68206 1.35468 1.10126 1.15000 0.90670 0.93141 0.93960 0.92972 0.92777 0.91093 0.92667 0.94115 0.94099 0.88632 0.92088 0.90403 0.95329 0.76296 0.77433 0.86384 0.85589 0.88443 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 7.97 71.98 0.57 -2.84 16 2 C -0.06 -1.58 0.80 -52.18 -0.04 -1.62 16 3 C -0.13 -2.73 8.46 71.98 0.61 -2.12 16 4 C -0.15 -4.85 7.04 71.98 0.51 -4.35 16 5 C -0.10 -2.41 3.65 30.59 0.11 -2.29 16 6 C 0.16 4.64 1.72 44.99 0.08 4.72 16 7 H 0.09 2.77 4.24 -2.39 -0.01 2.76 16 8 C 0.06 1.64 6.76 71.98 0.49 2.13 16 9 O -0.58 -15.97 12.86 -148.98 -1.92 -17.88 16 10 N -0.71 -28.42 2.87 -324.46 -0.93 -29.35 16 11 C 0.40 19.62 7.22 133.42 0.96 20.58 16 12 C -0.37 -16.37 8.84 22.73 0.20 -16.17 16 13 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 14 C -0.35 -18.29 9.83 22.87 0.22 -18.07 16 15 C 0.26 15.24 6.55 40.18 0.26 15.50 16 16 C -0.47 -27.06 9.14 23.46 0.21 -26.85 16 17 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 18 C 0.03 1.46 5.50 85.29 0.47 1.92 16 19 N -0.75 -41.70 11.46 21.84 0.25 -41.45 16 20 Si 0.98 39.92 29.56 68.60 2.03 41.95 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 N -0.57 -32.31 7.89 -186.59 -1.47 -33.78 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 1.21 6.19 -2.38 -0.01 1.20 16 28 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.15 16 31 H 0.05 2.24 5.42 -2.39 -0.01 2.23 16 32 H 0.04 1.28 8.13 -2.39 -0.02 1.26 16 33 H 0.04 1.37 7.79 -2.39 -0.02 1.35 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.70 7.77 -2.39 -0.02 1.68 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.03 0.89 7.76 -2.39 -0.02 0.87 16 38 H 0.39 7.14 9.12 -74.06 -0.68 6.46 16 39 H 0.39 16.96 7.18 -92.71 -0.67 16.30 16 40 H 0.12 4.45 6.15 -2.91 -0.02 4.43 16 41 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 42 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.27 13.94 8.29 -92.71 -0.77 13.17 16 Total: -1.00 -67.59 338.56 2.52 -65.07 By element: Atomic # 1 Polarization: 46.35 SS G_CDS: -0.33 Total: 46.02 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 4.89 Total: -30.58 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -2.15 Total: -104.58 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.92 Total: -17.88 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -67.59 2.52 -65.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.038 kcal (2) G-P(sol) polarization free energy of solvation -67.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds