Wall clock time and date at job start Tue Mar 31 2020 00:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.46999 * 2 1 4 4 C 1.53003 * 109.46841 * 239.99698 * 2 1 3 5 5 C 1.53001 * 109.47237 * 120.00248 * 2 1 3 6 6 C 1.53005 * 109.47280 * 65.71745 * 5 2 1 7 7 H 1.08997 * 109.46848 * 53.18722 * 6 5 2 8 8 C 1.53001 * 109.47015 * 173.18593 * 6 5 2 9 9 O 1.42901 * 109.47108 * 55.00554 * 8 6 5 10 10 N 1.46495 * 109.47507 * 293.18777 * 6 5 2 11 11 C 1.38818 * 120.00093 * 154.99556 * 10 6 5 12 12 C 1.39795 * 119.58704 * 0.02562 * 11 10 6 13 13 C 1.38589 * 119.49174 * 179.97438 * 12 11 10 14 14 C 1.38387 * 118.68569 * 0.25548 * 13 12 11 15 15 C 1.40555 * 119.14418 * 359.47738 * 14 13 12 16 16 C 1.41316 * 119.78604 * 180.25486 * 15 14 13 17 17 H 1.08004 * 119.99961 * 0.27443 * 16 15 14 18 18 C 1.40026 * 120.00430 * 180.27527 * 16 15 14 19 19 N 1.30748 * 119.99546 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00352 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47364 * 89.99630 * 20 18 16 22 22 H 1.48497 * 109.47266 * 210.00492 * 20 18 16 23 23 H 1.48507 * 109.47080 * 329.99785 * 20 18 16 24 24 N 1.31958 * 119.58164 * 179.97438 * 11 10 6 25 25 H 1.09004 * 109.47082 * 291.66412 * 1 2 3 26 26 H 1.08992 * 109.47398 * 51.67208 * 1 2 3 27 27 H 1.09003 * 109.46955 * 171.67195 * 1 2 3 28 28 H 1.09005 * 109.47051 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47127 * 299.99783 * 3 2 1 30 30 H 1.08997 * 109.47238 * 60.00323 * 3 2 1 31 31 H 1.08996 * 109.47280 * 300.00213 * 4 2 1 32 32 H 1.09004 * 109.46667 * 60.00248 * 4 2 1 33 33 H 1.09004 * 109.46692 * 179.97438 * 4 2 1 34 34 H 1.09005 * 109.47011 * 305.72210 * 5 2 1 35 35 H 1.08999 * 109.47353 * 185.72177 * 5 2 1 36 36 H 1.08997 * 109.46874 * 175.00449 * 8 6 5 37 37 H 1.08999 * 109.47386 * 295.00252 * 8 6 5 38 38 H 0.96700 * 114.00410 * 180.02562 * 9 8 6 39 39 H 0.97004 * 119.99898 * 334.99923 * 10 6 5 40 40 H 1.08006 * 120.25213 * 0.02562 * 12 11 10 41 41 H 1.08007 * 120.65822 * 179.97438 * 13 12 11 42 42 H 1.07997 * 120.43014 * 179.74833 * 14 13 12 43 43 H 0.97005 * 119.99657 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7213 1.2492 6 6 1.6508 -2.1994 1.1794 7 1 1.9923 -2.6207 0.2340 8 6 2.3034 -2.9539 2.3394 9 8 1.9479 -2.3289 3.5743 10 7 0.1943 -2.3258 1.2725 11 6 -0.4420 -3.4356 0.7336 12 6 0.3156 -4.4277 0.1044 13 6 -0.3216 -5.5352 -0.4325 14 6 -1.6991 -5.6222 -0.3328 15 6 -2.4047 -4.5947 0.3168 16 6 -3.8110 -4.6724 0.4312 17 1 -4.3398 -5.5215 0.0240 18 6 -4.5191 -3.6485 1.0723 19 7 -3.8789 -2.6203 1.5648 20 14 -6.3781 -3.7509 1.2228 21 1 -6.7350 -4.4490 2.4840 22 1 -6.9499 -2.3804 1.2366 23 1 -6.9276 -4.5047 0.0672 24 7 -1.7543 -3.5413 0.8226 25 1 -0.3633 0.3794 0.9551 26 1 -0.3634 0.6373 -0.8061 27 1 -0.3633 -1.0169 -0.1489 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 1.5955 -0.2700 2.1363 35 1 3.1252 -0.6334 1.3019 36 1 1.9561 -3.9871 2.3419 37 1 3.3868 -2.9352 2.2214 38 1 2.3277 -2.7553 4.3547 39 1 -0.3256 -1.6339 1.7108 40 1 1.3894 -4.3323 0.0379 41 1 0.2452 -6.3127 -0.9231 42 1 -2.2249 -6.4708 -0.7448 43 1 -4.3694 -1.9111 2.0093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:38 Heat of formation + Delta-G solvation = -20.552834 kcal Electronic energy + Delta-G solvation = -22771.542353 eV Core-core repulsion = 19623.439957 eV Total energy + Delta-G solvation = -3148.102396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.19903 -37.63087 -36.28589 -34.30249 -33.09832 -30.75739 -29.91470 -27.98355 -27.13412 -26.75109 -25.79775 -25.18457 -21.66659 -21.29468 -19.85084 -18.57398 -17.48024 -17.03560 -16.06950 -15.19829 -14.96397 -14.73922 -14.51305 -14.17997 -13.87636 -13.67651 -13.25250 -12.97122 -12.68865 -12.48105 -12.24259 -11.91619 -11.87187 -11.58671 -11.41630 -11.21684 -11.14533 -10.98930 -10.94620 -10.58824 -10.44785 -10.33473 -10.23482 -10.10126 -9.86613 -9.66760 -9.37761 -8.72032 -7.85426 -7.44022 -6.37743 -6.27201 -4.42642 2.91683 3.14158 3.17200 3.29081 3.34262 4.02123 4.24567 4.60336 4.85509 4.91043 5.04892 5.09467 5.47326 5.52120 5.61966 5.65229 5.76808 5.84603 5.93428 5.99709 6.01192 6.07848 6.15601 6.19451 6.19958 6.33896 6.35811 6.40379 6.56406 6.61028 6.70545 6.90901 6.94381 6.98245 7.02991 7.31033 7.65432 7.84117 7.87561 7.98745 8.23079 8.44754 8.78573 8.86147 9.19338 10.30712 10.46181 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.005549 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.533880 B = 5045.083756 C = 5514.820752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.107 4.107 6 C 0.164 3.836 7 H 0.092 0.908 8 C 0.057 3.943 9 O -0.564 6.564 10 N -0.718 5.718 11 C 0.414 3.586 12 C -0.373 4.373 13 C -0.031 4.031 14 C -0.320 4.320 15 C 0.293 3.707 16 C -0.435 4.435 17 H 0.081 0.919 18 C 0.072 3.928 19 N -0.712 5.712 20 Si 0.903 3.097 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 N -0.530 5.530 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.369 0.631 39 H 0.399 0.601 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 4.870 0.180 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.145 4.145 6 C 0.057 3.943 7 H 0.110 0.890 8 C -0.023 4.023 9 O -0.367 6.367 10 N -0.355 5.355 11 C 0.174 3.826 12 C -0.399 4.399 13 C -0.056 4.056 14 C -0.343 4.343 15 C 0.166 3.834 16 C -0.467 4.467 17 H 0.100 0.900 18 C -0.154 4.154 19 N -0.334 5.334 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.187 1.187 24 N -0.252 5.252 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.215 0.785 39 H 0.236 0.764 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.138 6.065 0.227 11.816 hybrid contribution -0.095 -0.922 0.219 0.952 sum 10.043 5.143 0.446 11.292 Atomic orbital electron populations 1.22257 0.93592 1.04645 1.00619 1.20507 0.96645 0.94497 0.94956 1.21874 1.00221 0.96113 1.01411 1.21960 0.99955 1.01224 0.97025 1.21783 1.00270 0.94491 0.97984 1.20902 0.82295 0.94983 0.96155 0.89036 1.22888 0.96813 0.97076 0.85479 1.86522 1.76679 1.57872 1.15671 1.44406 1.03877 1.23123 1.64106 1.18553 0.90198 0.85465 0.88409 1.20597 0.97596 1.01097 1.20601 1.20570 0.94266 0.95277 0.95468 1.21510 0.93935 1.03595 1.15236 1.18193 0.93083 0.85776 0.86301 1.19567 0.90668 1.05025 1.31424 0.90050 1.26032 1.00179 0.94846 0.94294 1.70156 1.36355 1.05090 1.21779 0.86410 0.82923 0.78332 0.79580 1.19577 1.20287 1.18667 1.68252 1.04086 1.25857 1.26996 0.93221 0.94108 0.89029 0.93238 0.93015 0.92922 0.91676 0.93109 0.93316 0.90859 0.91662 0.93057 0.94295 0.78525 0.76366 0.89430 0.89195 0.88925 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 7.04 37.16 0.26 -2.23 16 2 C -0.07 -0.89 0.80 -154.51 -0.12 -1.01 16 3 C -0.14 -1.61 8.47 37.15 0.31 -1.29 16 4 C -0.14 -1.91 7.97 37.16 0.30 -1.61 16 5 C -0.11 -1.46 3.65 -26.73 -0.10 -1.56 16 6 C 0.16 2.57 1.72 -67.93 -0.12 2.46 16 7 H 0.09 1.45 4.24 -51.93 -0.22 1.23 16 8 C 0.06 0.83 6.75 37.16 0.25 1.08 16 9 O -0.56 -8.26 12.86 -35.23 -0.45 -8.71 16 10 N -0.72 -14.22 2.87 -53.91 -0.15 -14.37 16 11 C 0.41 9.89 7.22 -155.33 -1.12 8.77 16 12 C -0.37 -8.42 8.84 -38.87 -0.34 -8.76 16 13 C -0.03 -0.73 10.15 -39.40 -0.40 -1.13 16 14 C -0.32 -8.14 9.83 -38.65 -0.38 -8.52 16 15 C 0.29 8.20 6.55 -85.00 -0.56 7.64 16 16 C -0.43 -11.88 9.14 -37.74 -0.34 -12.23 16 17 H 0.08 2.10 7.85 -52.48 -0.41 1.68 16 18 C 0.07 1.85 5.50 -17.34 -0.10 1.76 16 19 N -0.71 -19.07 11.46 55.55 0.64 -18.43 16 20 Si 0.90 18.99 29.56 -169.99 -5.02 13.96 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 24 N -0.53 -14.55 7.89 -10.33 -0.08 -14.63 16 25 H 0.05 0.81 7.80 -51.93 -0.41 0.40 16 26 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.09 1.80 5.41 -51.93 -0.28 1.51 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.98 6.19 -51.93 -0.32 0.66 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.09 7.77 -51.93 -0.40 0.68 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.84 7.75 -51.93 -0.40 0.44 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.37 3.78 9.12 45.56 0.42 4.19 16 39 H 0.40 8.38 7.19 -40.82 -0.29 8.09 16 40 H 0.09 1.74 6.15 -52.48 -0.32 1.42 16 41 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 42 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -29.76 338.56 -8.44 -38.20 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -6.01 Total: 15.51 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -2.46 Total: -16.63 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.40 Total: -47.43 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.45 Total: -8.71 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.76 -8.44 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.645 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds