Wall clock time and date at job start Tue Mar 31 2020 00:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.46999 * 2 1 4 4 C 1.53003 * 109.46841 * 239.99698 * 2 1 3 5 5 C 1.53001 * 109.47237 * 120.00248 * 2 1 3 6 6 C 1.53005 * 109.47280 * 65.71745 * 5 2 1 7 7 H 1.08997 * 109.46848 * 53.18722 * 6 5 2 8 8 C 1.53001 * 109.47015 * 173.18593 * 6 5 2 9 9 O 1.42901 * 109.47108 * 55.00554 * 8 6 5 10 10 N 1.46495 * 109.47507 * 293.18777 * 6 5 2 11 11 C 1.38818 * 120.00093 * 154.99556 * 10 6 5 12 12 C 1.39795 * 119.58704 * 0.02562 * 11 10 6 13 13 C 1.38589 * 119.49174 * 179.97438 * 12 11 10 14 14 C 1.38387 * 118.68569 * 0.25548 * 13 12 11 15 15 C 1.40555 * 119.14418 * 359.47738 * 14 13 12 16 16 C 1.41316 * 119.78604 * 180.25486 * 15 14 13 17 17 H 1.08004 * 119.99961 * 0.27443 * 16 15 14 18 18 C 1.40026 * 120.00430 * 180.27527 * 16 15 14 19 19 N 1.30748 * 119.99546 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00352 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47364 * 89.99630 * 20 18 16 22 22 H 1.48497 * 109.47266 * 210.00492 * 20 18 16 23 23 H 1.48507 * 109.47080 * 329.99785 * 20 18 16 24 24 N 1.31958 * 119.58164 * 179.97438 * 11 10 6 25 25 H 1.09004 * 109.47082 * 291.66412 * 1 2 3 26 26 H 1.08992 * 109.47398 * 51.67208 * 1 2 3 27 27 H 1.09003 * 109.46955 * 171.67195 * 1 2 3 28 28 H 1.09005 * 109.47051 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47127 * 299.99783 * 3 2 1 30 30 H 1.08997 * 109.47238 * 60.00323 * 3 2 1 31 31 H 1.08996 * 109.47280 * 300.00213 * 4 2 1 32 32 H 1.09004 * 109.46667 * 60.00248 * 4 2 1 33 33 H 1.09004 * 109.46692 * 179.97438 * 4 2 1 34 34 H 1.09005 * 109.47011 * 305.72210 * 5 2 1 35 35 H 1.08999 * 109.47353 * 185.72177 * 5 2 1 36 36 H 1.08997 * 109.46874 * 175.00449 * 8 6 5 37 37 H 1.08999 * 109.47386 * 295.00252 * 8 6 5 38 38 H 0.96700 * 114.00410 * 180.02562 * 9 8 6 39 39 H 0.97004 * 119.99898 * 334.99923 * 10 6 5 40 40 H 1.08006 * 120.25213 * 0.02562 * 12 11 10 41 41 H 1.08007 * 120.65822 * 179.97438 * 13 12 11 42 42 H 1.07997 * 120.43014 * 179.74833 * 14 13 12 43 43 H 0.97005 * 119.99657 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7213 1.2492 6 6 1.6508 -2.1994 1.1794 7 1 1.9923 -2.6207 0.2340 8 6 2.3034 -2.9539 2.3394 9 8 1.9479 -2.3289 3.5743 10 7 0.1943 -2.3258 1.2725 11 6 -0.4420 -3.4356 0.7336 12 6 0.3156 -4.4277 0.1044 13 6 -0.3216 -5.5352 -0.4325 14 6 -1.6991 -5.6222 -0.3328 15 6 -2.4047 -4.5947 0.3168 16 6 -3.8110 -4.6724 0.4312 17 1 -4.3398 -5.5215 0.0240 18 6 -4.5191 -3.6485 1.0723 19 7 -3.8789 -2.6203 1.5648 20 14 -6.3781 -3.7509 1.2228 21 1 -6.7350 -4.4490 2.4840 22 1 -6.9499 -2.3804 1.2366 23 1 -6.9276 -4.5047 0.0672 24 7 -1.7543 -3.5413 0.8226 25 1 -0.3633 0.3794 0.9551 26 1 -0.3634 0.6373 -0.8061 27 1 -0.3633 -1.0169 -0.1489 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 1.5955 -0.2700 2.1363 35 1 3.1252 -0.6334 1.3019 36 1 1.9561 -3.9871 2.3419 37 1 3.3868 -2.9352 2.2214 38 1 2.3277 -2.7553 4.3547 39 1 -0.3256 -1.6339 1.7108 40 1 1.3894 -4.3323 0.0379 41 1 0.2452 -6.3127 -0.9231 42 1 -2.2249 -6.4708 -0.7448 43 1 -4.3694 -1.9111 2.0093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:37 Heat of formation + Delta-G solvation = -39.096423 kcal Electronic energy + Delta-G solvation = -22772.346464 eV Core-core repulsion = 19623.439957 eV Total energy + Delta-G solvation = -3148.906506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65548 -39.26840 -37.41188 -35.93621 -34.85286 -32.46213 -31.64510 -29.63367 -28.17816 -28.00247 -27.22556 -26.78215 -23.39818 -23.00398 -21.39946 -19.76829 -19.19282 -18.40732 -17.75911 -16.65564 -16.45863 -16.26214 -16.11144 -15.44620 -15.30507 -15.00371 -14.63797 -14.60384 -14.21655 -13.94866 -13.71077 -13.31486 -13.03641 -12.96410 -12.80869 -12.69494 -12.52410 -12.51545 -12.42741 -12.26638 -12.07163 -11.72096 -11.50981 -11.41091 -11.29235 -11.14662 -10.81448 -10.44428 -9.77490 -9.37362 -8.18743 -8.12485 -6.44458 1.10204 1.40659 1.40797 1.53810 1.59452 2.25571 2.72845 2.95908 3.51938 3.74917 3.93834 4.00155 4.11110 4.31638 4.38745 4.40088 4.53937 4.54652 4.71366 4.72538 4.82763 4.84499 4.91291 4.96156 4.98216 5.03088 5.04460 5.10273 5.17031 5.20103 5.24540 5.31159 5.40448 5.46527 5.58571 5.64965 5.76904 6.01085 6.14067 6.26548 6.63972 6.89146 6.94366 7.02532 7.30064 8.40718 8.55502 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.005549 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.533880 B = 5045.083756 C = 5514.820752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.063 4.063 3 C -0.134 4.134 4 C -0.141 4.141 5 C -0.097 4.097 6 C 0.156 3.844 7 H 0.095 0.905 8 C 0.061 3.939 9 O -0.582 6.582 10 N -0.710 5.710 11 C 0.402 3.598 12 C -0.367 4.367 13 C -0.030 4.030 14 C -0.350 4.350 15 C 0.261 3.739 16 C -0.474 4.474 17 H 0.083 0.917 18 C 0.027 3.973 19 N -0.749 5.749 20 Si 0.983 3.017 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.257 1.257 24 N -0.565 5.565 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.028 0.972 37 H 0.078 0.922 38 H 0.389 0.611 39 H 0.390 0.610 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.789 5.512 0.176 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 C -0.191 4.191 4 C -0.198 4.198 5 C -0.135 4.135 6 C 0.050 3.950 7 H 0.113 0.887 8 C -0.018 4.018 9 O -0.389 6.389 10 N -0.344 5.344 11 C 0.161 3.839 12 C -0.393 4.393 13 C -0.054 4.054 14 C -0.373 4.373 15 C 0.134 3.866 16 C -0.506 4.506 17 H 0.101 0.899 18 C -0.195 4.195 19 N -0.371 5.371 20 Si 0.803 3.197 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.181 1.181 24 N -0.288 5.288 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.047 0.953 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.226 0.774 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.116 0.884 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.180 6.710 0.234 13.907 hybrid contribution -0.539 -1.091 0.223 1.237 sum 11.641 5.619 0.457 12.934 Atomic orbital electron populations 1.22161 0.96216 1.02103 1.00052 1.20488 0.94289 0.96205 0.95281 1.21819 1.01505 0.94236 1.01571 1.21920 1.01540 0.99632 0.96708 1.21723 1.01869 0.92560 0.97325 1.21236 0.79710 0.96965 0.97051 0.88748 1.22797 0.98733 0.95263 0.84996 1.86476 1.77444 1.58367 1.16586 1.44552 1.05567 1.21422 1.62849 1.18952 0.89716 0.86833 0.88404 1.20935 0.99051 1.00239 1.19046 1.20978 0.93624 0.96140 0.94652 1.21646 0.95292 1.03751 1.16610 1.18649 0.94012 0.86804 0.87145 1.19898 0.91291 1.06157 1.33241 0.89902 1.26910 1.05275 0.93954 0.93326 1.70266 1.38456 1.05835 1.22522 0.85213 0.76183 0.78601 0.79667 1.18924 1.19394 1.18104 1.68213 1.05934 1.26387 1.28255 0.94097 0.94110 0.92661 0.91090 0.92777 0.92973 0.93952 0.93140 0.90674 0.92091 0.88632 0.95333 0.90400 0.76296 0.77434 0.86378 0.85587 0.88446 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 7.04 71.98 0.51 -4.35 16 2 C -0.06 -1.58 0.80 -52.18 -0.04 -1.62 16 3 C -0.13 -2.73 8.47 71.98 0.61 -2.12 16 4 C -0.14 -3.41 7.97 71.98 0.57 -2.84 16 5 C -0.10 -2.40 3.65 30.60 0.11 -2.29 16 6 C 0.16 4.64 1.72 44.99 0.08 4.72 16 7 H 0.09 2.77 4.24 -2.39 -0.01 2.76 16 8 C 0.06 1.64 6.75 71.98 0.49 2.12 16 9 O -0.58 -15.97 12.86 -148.98 -1.92 -17.89 16 10 N -0.71 -28.42 2.87 -324.46 -0.93 -29.35 16 11 C 0.40 19.61 7.22 133.42 0.96 20.57 16 12 C -0.37 -16.35 8.84 22.73 0.20 -16.15 16 13 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 14 C -0.35 -18.28 9.83 22.87 0.22 -18.06 16 15 C 0.26 15.23 6.55 40.18 0.26 15.49 16 16 C -0.47 -27.04 9.14 23.46 0.21 -26.82 16 17 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 18 C 0.03 1.44 5.50 85.29 0.47 1.91 16 19 N -0.75 -41.70 11.46 21.84 0.25 -41.44 16 20 Si 0.98 39.95 29.56 68.60 2.03 41.98 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 22 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 N -0.57 -32.30 7.89 -186.59 -1.47 -33.78 16 25 H 0.04 1.37 7.80 -2.38 -0.02 1.35 16 26 H 0.04 1.28 8.13 -2.39 -0.02 1.26 16 27 H 0.05 2.24 5.41 -2.39 -0.01 2.23 16 28 H 0.07 1.16 8.14 -2.38 -0.02 1.15 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 1.22 6.19 -2.39 -0.01 1.20 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.70 7.77 -2.38 -0.02 1.68 16 35 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.03 0.89 7.75 -2.39 -0.02 0.87 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.39 7.14 9.12 -74.06 -0.68 6.46 16 39 H 0.39 16.96 7.19 -92.71 -0.67 16.30 16 40 H 0.12 4.45 6.15 -2.91 -0.02 4.43 16 41 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 42 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.27 13.89 8.29 -92.70 -0.77 13.13 16 Total: -1.00 -67.63 338.56 2.52 -65.12 By element: Atomic # 1 Polarization: 46.25 SS G_CDS: -0.33 Total: 45.93 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 4.89 Total: -30.56 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -2.15 Total: -104.57 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.92 Total: -17.89 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -67.63 2.52 -65.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.020 kcal (2) G-P(sol) polarization free energy of solvation -67.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds