Wall clock time and date at job start Tue Mar 31 2020 00:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47121 * 119.99791 * 2 1 4 4 C 1.32868 * 119.99669 * 181.58464 * 3 2 1 5 5 C 1.50700 * 120.00108 * 5.52231 * 4 3 2 6 6 C 1.50706 * 109.46851 * 126.24131 * 5 4 3 7 7 O 1.21278 * 120.00067 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99629 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99593 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47029 * 179.97438 * 9 8 6 11 11 C 1.53037 * 109.46223 * 295.02861 * 10 9 8 12 12 C 1.53192 * 109.31462 * 178.59879 * 11 10 9 13 13 N 1.46925 * 108.76328 * 54.65418 * 12 11 10 14 14 C 1.36943 * 120.63171 * 126.40348 * 13 12 11 15 15 H 1.08006 * 119.99860 * 328.96277 * 14 13 12 16 16 C 1.38804 * 120.00115 * 148.95809 * 14 13 12 17 17 N 1.31622 * 120.00175 * 160.18157 * 16 14 13 18 18 Si 1.86807 * 120.00014 * 340.18012 * 16 14 13 19 19 H 1.48496 * 109.47144 * 93.63907 * 18 16 14 20 20 H 1.48509 * 109.46820 * 213.64266 * 18 16 14 21 21 H 1.48506 * 109.46884 * 333.63579 * 18 16 14 22 22 C 1.46919 * 118.74183 * 306.38372 * 13 12 11 23 23 C 1.53043 * 109.46118 * 174.97065 * 10 9 8 24 24 H 1.08002 * 120.00005 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.99885 * 359.72708 * 1 2 3 26 26 H 1.07997 * 120.00181 * 179.97438 * 2 1 3 27 27 H 1.08001 * 120.00210 * 1.59730 * 3 2 1 28 28 H 1.08004 * 119.99608 * 185.51891 * 4 3 2 29 29 H 1.08995 * 109.47006 * 246.23997 * 5 4 3 30 30 H 1.09001 * 109.47245 * 6.24303 * 5 4 3 31 31 H 0.96995 * 120.00282 * 0.02562 * 8 6 5 32 32 H 1.09004 * 109.47194 * 299.99464 * 9 8 6 33 33 H 1.08996 * 109.47585 * 59.99682 * 9 8 6 34 34 H 1.09009 * 109.45794 * 54.99728 * 10 9 8 35 35 H 1.09000 * 109.49304 * 298.56703 * 11 10 9 36 36 H 1.09004 * 109.49727 * 58.65911 * 11 10 9 37 37 H 1.08997 * 109.59571 * 294.86451 * 12 11 10 38 38 H 1.09002 * 109.70032 * 174.50151 * 12 11 10 39 39 H 0.97000 * 120.00155 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.58868 * 293.82426 * 22 13 12 41 41 H 1.08995 * 109.70772 * 173.46742 * 22 13 12 42 42 H 1.08998 * 109.49856 * 301.33333 * 23 10 9 43 43 H 1.08996 * 109.49272 * 61.43445 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3926 1.2743 -0.0318 5 6 4.1427 -0.0227 -0.1934 6 6 5.0937 0.0886 -1.3572 7 8 5.1565 1.1197 -1.9925 8 7 5.8751 -0.9576 -1.6913 9 6 6.7999 -0.8492 -2.8222 10 6 7.5623 -2.1656 -2.9856 11 6 8.4472 -2.3980 -1.7588 12 6 9.1822 -3.7336 -1.9099 13 7 9.9095 -3.7310 -3.1865 14 6 11.2505 -4.0054 -3.2261 15 1 11.8807 -3.7415 -2.3895 16 6 11.8000 -4.6229 -4.3412 17 7 13.0941 -4.5424 -4.5673 18 14 10.7027 -5.5682 -5.5211 19 1 10.2801 -4.6736 -6.6285 20 1 11.4526 -6.7235 -6.0765 21 1 9.5033 -6.0591 -4.7960 22 6 9.1706 -3.4289 -4.4199 23 6 8.4354 -2.0968 -4.2406 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0045 26 1 1.8688 -0.9353 0.0004 27 1 1.5246 2.2093 0.0261 28 1 3.9347 2.2041 0.0580 29 1 4.7048 -0.2330 0.7164 30 1 3.4351 -0.8310 -0.3783 31 1 5.8251 -1.7821 -1.1830 32 1 6.2379 -0.6390 -3.7323 33 1 7.5071 -0.0407 -2.6371 34 1 6.8521 -2.9870 -3.0818 35 1 9.1739 -1.5898 -1.6762 36 1 7.8273 -2.4234 -0.8626 37 1 8.4609 -4.5507 -1.9018 38 1 9.8870 -3.8601 -1.0881 39 1 13.4780 -4.9736 -5.3468 40 1 8.4483 -4.2212 -4.6166 41 1 9.8661 -3.3527 -5.2557 42 1 7.8071 -1.9081 -5.1110 43 1 9.1623 -1.2916 -4.1343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136779195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:57 Heat of formation + Delta-G solvation = 9.626072 kcal Electronic energy + Delta-G solvation = -21203.611972 eV Core-core repulsion = 18056.818232 eV Total energy + Delta-G solvation = -3146.793740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.92277 -38.16351 -36.37282 -35.08958 -32.94339 -32.18505 -31.10052 -30.36148 -28.45590 -26.52069 -23.81775 -22.80333 -22.09546 -21.29444 -20.76358 -19.45729 -18.69523 -17.26383 -16.74928 -16.10855 -16.06210 -15.17640 -15.11523 -14.82466 -14.21226 -14.02627 -13.70682 -13.55832 -13.27411 -12.86942 -12.76233 -12.70206 -12.38122 -12.22991 -12.00423 -11.76146 -11.40035 -11.20912 -11.00080 -10.82862 -10.65382 -10.53389 -10.16875 -10.03452 -9.88084 -9.66699 -9.49738 -9.08339 -8.64560 -8.61428 -6.93658 -5.96949 -3.35591 1.04157 2.55602 2.71726 3.24174 3.31532 3.46766 3.50066 4.36445 4.51928 4.60344 4.72192 4.84701 4.93652 4.98571 5.01598 5.11682 5.17339 5.21022 5.37004 5.41404 5.52557 5.68401 5.76740 5.86977 5.91925 6.02575 6.04857 6.14926 6.16415 6.25916 6.35899 6.37892 6.41783 6.48400 6.57384 6.62382 6.65827 6.69509 6.95311 7.42682 7.98795 8.14597 8.33117 8.93993 9.70735 10.10361 11.19116 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039158 B = 0.002899 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.876375 B = 9656.388340 C = 9782.054998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.134 4.134 3 C -0.142 4.142 4 C -0.112 4.112 5 C -0.124 4.124 6 C 0.513 3.487 7 O -0.542 6.542 8 N -0.727 5.727 9 C 0.123 3.877 10 C -0.091 4.091 11 C -0.129 4.129 12 C 0.148 3.852 13 N -0.606 5.606 14 C -0.262 4.262 15 H 0.083 0.917 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 0.883 3.117 19 H -0.288 1.288 20 H -0.303 1.303 21 H -0.271 1.271 22 C 0.129 3.871 23 C -0.126 4.126 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.401 0.599 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.020 0.980 38 H 0.062 0.938 39 H 0.263 0.737 40 H 0.023 0.977 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.694 7.196 9.369 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.151 4.151 3 C -0.160 4.160 4 C -0.130 4.130 5 C -0.163 4.163 6 C 0.300 3.700 7 O -0.419 6.419 8 N -0.379 5.379 9 C 0.000 4.000 10 C -0.110 4.110 11 C -0.168 4.168 12 C 0.022 3.978 13 N -0.330 5.330 14 C -0.390 4.390 15 H 0.100 0.900 16 C -0.174 4.174 17 N -0.550 5.550 18 Si 0.713 3.287 19 H -0.215 1.215 20 H -0.231 1.231 21 H -0.196 1.196 22 C 0.003 3.997 23 C -0.166 4.166 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.466 7.879 8.807 24.504 hybrid contribution -0.510 -0.973 -0.559 1.233 sum -21.977 6.906 8.248 24.468 Atomic orbital electron populations 1.24372 0.95657 1.01969 0.99832 1.22106 0.95495 0.96991 1.00542 1.21865 0.94464 0.96868 1.02817 1.22974 0.94638 0.97790 0.97593 1.20909 0.98533 0.98790 0.98085 1.20505 0.80796 0.83454 0.85291 1.90707 1.68080 1.29268 1.53806 1.46099 1.41177 1.16395 1.34198 1.21534 0.91455 0.98713 0.88294 1.21307 0.96892 0.95529 0.97297 1.22074 0.98372 1.00797 0.95533 1.20929 0.94424 0.93093 0.89389 1.44334 1.06575 1.81032 1.01029 1.18891 0.81514 1.33533 1.05049 0.89954 1.25375 0.95272 0.98519 0.98214 1.69836 1.11100 1.45474 1.28640 0.86900 0.80709 0.80194 0.80925 1.21526 1.23075 1.19560 1.21290 0.94722 0.93003 0.90681 1.21999 0.98307 1.00820 0.95479 0.88149 0.88399 0.86637 0.86450 0.86116 0.87744 0.87932 0.76500 0.91787 0.91420 0.91210 0.91698 0.93024 0.96185 0.91901 0.92750 0.95902 0.90993 0.92602 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 14.43 28.88 0.42 -0.77 16 2 C -0.13 -1.00 9.26 -37.83 -0.35 -1.35 16 3 C -0.14 -1.18 9.83 -37.83 -0.37 -1.55 16 4 C -0.11 -1.01 8.83 -36.16 -0.32 -1.33 16 5 C -0.12 -1.00 5.94 -29.03 -0.17 -1.17 16 6 C 0.51 6.06 7.82 -10.98 -0.09 5.98 16 7 O -0.54 -8.72 16.03 5.56 0.09 -8.63 16 8 N -0.73 -7.81 5.27 -60.29 -0.32 -8.13 16 9 C 0.12 1.60 5.06 -4.04 -0.02 1.58 16 10 C -0.09 -1.28 2.19 -90.58 -0.20 -1.48 16 11 C -0.13 -1.91 5.25 -26.61 -0.14 -2.05 16 12 C 0.15 2.75 6.52 -3.71 -0.02 2.73 16 13 N -0.61 -14.04 2.71 -172.32 -0.47 -14.51 16 14 C -0.26 -7.24 10.00 -15.06 -0.15 -7.39 16 15 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 16 C 0.03 0.73 5.21 -17.43 -0.09 0.64 16 17 N -0.91 -27.75 13.97 55.49 0.78 -26.98 16 18 Si 0.88 22.22 24.41 -169.99 -4.15 18.07 16 19 H -0.29 -7.00 6.72 56.52 0.38 -6.62 16 20 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 21 H -0.27 -6.67 6.68 56.52 0.38 -6.29 16 22 C 0.13 2.72 4.21 -3.71 -0.02 2.71 16 23 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 24 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 25 H 0.10 0.58 8.05 -52.49 -0.42 0.15 16 26 H 0.12 0.73 5.90 -52.49 -0.31 0.42 16 27 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.66 5.35 -51.93 -0.28 0.38 16 31 H 0.40 3.30 7.65 -40.82 -0.31 2.99 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.02 0.48 7.04 -51.93 -0.37 0.11 16 41 H 0.07 1.69 4.95 -51.93 -0.26 1.43 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -32.91 342.54 -7.56 -40.46 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.98 Total: 0.28 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.67 Total: -5.73 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.01 Total: -49.62 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.15 Total: 18.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.91 -7.56 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136779195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.091 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds