Wall clock time and date at job start Tue Mar 31 2020 00:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47121 * 119.99791 * 2 1 4 4 C 1.32868 * 119.99669 * 181.58464 * 3 2 1 5 5 C 1.50700 * 120.00108 * 5.52231 * 4 3 2 6 6 C 1.50706 * 109.46851 * 126.24131 * 5 4 3 7 7 O 1.21278 * 120.00067 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99629 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99593 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47029 * 179.97438 * 9 8 6 11 11 C 1.53037 * 109.46223 * 295.02861 * 10 9 8 12 12 C 1.53192 * 109.31462 * 178.59879 * 11 10 9 13 13 N 1.46925 * 108.76328 * 54.65418 * 12 11 10 14 14 C 1.36943 * 120.63171 * 126.40348 * 13 12 11 15 15 H 1.08006 * 119.99860 * 328.96277 * 14 13 12 16 16 C 1.38804 * 120.00115 * 148.95809 * 14 13 12 17 17 N 1.31622 * 120.00175 * 160.18157 * 16 14 13 18 18 Si 1.86807 * 120.00014 * 340.18012 * 16 14 13 19 19 H 1.48496 * 109.47144 * 93.63907 * 18 16 14 20 20 H 1.48509 * 109.46820 * 213.64266 * 18 16 14 21 21 H 1.48506 * 109.46884 * 333.63579 * 18 16 14 22 22 C 1.46919 * 118.74183 * 306.38372 * 13 12 11 23 23 C 1.53043 * 109.46118 * 174.97065 * 10 9 8 24 24 H 1.08002 * 120.00005 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.99885 * 359.72708 * 1 2 3 26 26 H 1.07997 * 120.00181 * 179.97438 * 2 1 3 27 27 H 1.08001 * 120.00210 * 1.59730 * 3 2 1 28 28 H 1.08004 * 119.99608 * 185.51891 * 4 3 2 29 29 H 1.08995 * 109.47006 * 246.23997 * 5 4 3 30 30 H 1.09001 * 109.47245 * 6.24303 * 5 4 3 31 31 H 0.96995 * 120.00282 * 0.02562 * 8 6 5 32 32 H 1.09004 * 109.47194 * 299.99464 * 9 8 6 33 33 H 1.08996 * 109.47585 * 59.99682 * 9 8 6 34 34 H 1.09009 * 109.45794 * 54.99728 * 10 9 8 35 35 H 1.09000 * 109.49304 * 298.56703 * 11 10 9 36 36 H 1.09004 * 109.49727 * 58.65911 * 11 10 9 37 37 H 1.08997 * 109.59571 * 294.86451 * 12 11 10 38 38 H 1.09002 * 109.70032 * 174.50151 * 12 11 10 39 39 H 0.97000 * 120.00155 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.58868 * 293.82426 * 22 13 12 41 41 H 1.08995 * 109.70772 * 173.46742 * 22 13 12 42 42 H 1.08998 * 109.49856 * 301.33333 * 23 10 9 43 43 H 1.08996 * 109.49272 * 61.43445 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3926 1.2743 -0.0318 5 6 4.1427 -0.0227 -0.1934 6 6 5.0937 0.0886 -1.3572 7 8 5.1565 1.1197 -1.9925 8 7 5.8751 -0.9576 -1.6913 9 6 6.7999 -0.8492 -2.8222 10 6 7.5623 -2.1656 -2.9856 11 6 8.4472 -2.3980 -1.7588 12 6 9.1822 -3.7336 -1.9099 13 7 9.9095 -3.7310 -3.1865 14 6 11.2505 -4.0054 -3.2261 15 1 11.8807 -3.7415 -2.3895 16 6 11.8000 -4.6229 -4.3412 17 7 13.0941 -4.5424 -4.5673 18 14 10.7027 -5.5682 -5.5211 19 1 10.2801 -4.6736 -6.6285 20 1 11.4526 -6.7235 -6.0765 21 1 9.5033 -6.0591 -4.7960 22 6 9.1706 -3.4289 -4.4199 23 6 8.4354 -2.0968 -4.2406 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0045 26 1 1.8688 -0.9353 0.0004 27 1 1.5246 2.2093 0.0261 28 1 3.9347 2.2041 0.0580 29 1 4.7048 -0.2330 0.7164 30 1 3.4351 -0.8310 -0.3783 31 1 5.8251 -1.7821 -1.1830 32 1 6.2379 -0.6390 -3.7323 33 1 7.5071 -0.0407 -2.6371 34 1 6.8521 -2.9870 -3.0818 35 1 9.1739 -1.5898 -1.6762 36 1 7.8273 -2.4234 -0.8626 37 1 8.4609 -4.5507 -1.9018 38 1 9.8870 -3.8601 -1.0881 39 1 13.4780 -4.9736 -5.3468 40 1 8.4483 -4.2212 -4.6166 41 1 9.8661 -3.3527 -5.2557 42 1 7.8071 -1.9081 -5.1110 43 1 9.1623 -1.2916 -4.1343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136779195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:56 Heat of formation + Delta-G solvation = -12.160739 kcal Electronic energy + Delta-G solvation = -21204.556719 eV Core-core repulsion = 18056.818232 eV Total energy + Delta-G solvation = -3147.738487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88542 -39.54630 -37.04829 -36.37780 -34.51802 -33.08664 -32.56579 -31.84611 -29.40362 -27.77946 -25.44856 -24.23463 -22.88902 -22.57957 -21.68008 -20.85550 -19.37766 -18.77396 -17.99726 -17.27170 -16.91180 -16.72503 -16.03107 -15.85421 -15.50535 -15.32623 -15.14165 -14.81153 -14.62483 -14.43225 -13.91262 -13.70109 -13.41317 -13.27974 -13.23093 -12.88353 -12.83029 -12.53248 -12.26624 -12.13136 -11.77631 -11.72371 -11.58790 -11.55088 -11.32697 -11.19272 -10.90220 -10.66651 -10.05321 -9.21361 -8.85450 -8.17208 -5.51325 0.47387 1.31382 1.41176 1.51119 1.68108 2.08895 2.42470 2.44669 3.06905 3.39127 3.77060 3.79887 3.88503 3.91795 3.99708 4.18043 4.29220 4.39903 4.45658 4.50573 4.56471 4.64984 4.65875 4.75621 4.78994 4.85695 4.91272 4.98946 5.03178 5.12418 5.18137 5.22910 5.29214 5.44503 5.46908 5.61404 5.62222 5.80193 5.90649 6.01756 6.14302 6.61110 6.95533 7.30423 7.64352 8.05901 9.03041 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039158 B = 0.002899 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.876375 B = 9656.388340 C = 9782.054998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.152 4.152 3 C -0.139 4.139 4 C -0.134 4.134 5 C -0.113 4.113 6 C 0.511 3.489 7 O -0.591 6.591 8 N -0.716 5.716 9 C 0.134 3.866 10 C -0.079 4.079 11 C -0.118 4.118 12 C 0.141 3.859 13 N -0.622 5.622 14 C -0.249 4.249 15 H 0.046 0.954 16 C -0.036 4.036 17 N -0.959 5.959 18 Si 0.949 3.051 19 H -0.276 1.276 20 H -0.312 1.312 21 H -0.256 1.256 22 C 0.122 3.878 23 C -0.121 4.121 24 H 0.115 0.885 25 H 0.101 0.899 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.417 0.583 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.261 0.739 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.383 6.419 10.070 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C -0.157 4.157 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.299 3.701 7 O -0.471 6.471 8 N -0.368 5.368 9 C 0.010 3.990 10 C -0.098 4.098 11 C -0.157 4.157 12 C 0.016 3.984 13 N -0.347 5.347 14 C -0.379 4.379 15 H 0.064 0.936 16 C -0.231 4.231 17 N -0.605 5.605 18 Si 0.777 3.223 19 H -0.202 1.202 20 H -0.240 1.240 21 H -0.180 1.180 22 C -0.002 4.002 23 C -0.161 4.161 24 H 0.133 0.867 25 H 0.119 0.881 26 H 0.147 0.853 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.254 0.746 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.212 7.088 9.550 27.876 hybrid contribution 0.592 -0.657 -0.683 1.117 sum -24.620 6.431 8.866 26.947 Atomic orbital electron populations 1.24609 0.95570 1.02909 0.98008 1.22239 0.95941 0.96977 1.01845 1.22042 0.94401 0.97690 1.01589 1.22988 0.95040 0.97980 0.99236 1.20914 0.98135 0.98879 0.97259 1.21176 0.80744 0.82612 0.85577 1.90692 1.69597 1.31190 1.55635 1.45959 1.40293 1.17012 1.33556 1.21231 0.91335 0.97290 0.89147 1.21177 0.96537 0.96809 0.95267 1.21954 0.98271 0.97623 0.97810 1.21152 0.94485 0.95874 0.86873 1.44496 1.05374 1.81398 1.03441 1.18828 0.83607 1.31967 1.03521 0.93641 1.26042 0.96467 0.99964 1.00621 1.69978 1.13205 1.47411 1.29912 0.85824 0.79013 0.78291 0.79125 1.20233 1.24049 1.18012 1.21352 0.94384 0.95619 0.88888 1.21894 0.98415 0.97559 0.98227 0.86704 0.88094 0.85323 0.86227 0.87516 0.85254 0.85719 0.74589 0.92001 0.93156 0.89111 0.93720 0.88955 0.94107 0.93029 0.93000 0.94552 0.93808 0.90127 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 14.43 66.64 0.96 -0.83 16 2 C -0.15 -1.86 9.26 23.43 0.22 -1.64 16 3 C -0.14 -2.08 9.83 23.43 0.23 -1.85 16 4 C -0.13 -2.23 8.83 24.51 0.22 -2.01 16 5 C -0.11 -1.48 5.94 29.10 0.17 -1.31 16 6 C 0.51 10.85 7.82 87.66 0.69 11.54 16 7 O -0.59 -18.51 16.03 -3.02 -0.05 -18.55 16 8 N -0.72 -12.90 5.27 -463.06 -2.44 -15.34 16 9 C 0.13 3.11 5.06 86.38 0.44 3.55 16 10 C -0.08 -1.95 2.19 -10.77 -0.02 -1.98 16 11 C -0.12 -3.15 5.25 30.67 0.16 -2.99 16 12 C 0.14 4.95 6.52 86.36 0.56 5.52 16 13 N -0.62 -28.37 2.71 -699.11 -1.90 -30.27 16 14 C -0.25 -14.13 10.00 84.03 0.84 -13.29 16 15 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 16 C -0.04 -2.12 5.21 84.86 0.44 -1.68 16 17 N -0.96 -60.77 13.97 21.65 0.30 -60.47 16 18 Si 0.95 46.28 24.41 68.60 1.67 47.95 16 19 H -0.28 -12.77 6.72 99.48 0.67 -12.10 16 20 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 21 H -0.26 -11.71 6.68 99.48 0.66 -11.05 16 22 C 0.12 4.96 4.21 86.37 0.36 5.33 16 23 C -0.12 -3.83 5.36 30.67 0.16 -3.66 16 24 H 0.11 0.84 8.06 -2.91 -0.02 0.82 16 25 H 0.10 0.95 8.05 -2.91 -0.02 0.93 16 26 H 0.13 1.16 5.90 -2.91 -0.02 1.14 16 27 H 0.12 1.62 8.06 -2.91 -0.02 1.60 16 28 H 0.11 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.13 1.09 5.35 -2.39 -0.01 1.08 16 31 H 0.42 4.83 7.65 -92.71 -0.71 4.12 16 32 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.75 7.15 -2.38 -0.02 1.74 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 39 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 40 H 0.04 1.39 7.04 -2.39 -0.02 1.38 16 41 H 0.04 2.01 4.95 -2.39 -0.01 2.00 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -74.36 342.54 3.22 -71.14 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.19 Total: 10.84 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.43 Total: -5.31 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -4.03 Total: -106.07 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.05 Total: -18.55 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.67 Total: 47.95 kcal Total: -74.36 3.22 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136779195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.982 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds