Wall clock time and date at job start Tue Mar 31 2020 00:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47294 * 2 1 4 4 C 1.53002 * 109.47119 * 119.99608 * 2 1 3 5 5 C 1.50700 * 112.85244 * 304.26706 * 4 2 1 6 6 O 1.21273 * 119.99886 * 265.35712 * 5 4 2 7 7 N 1.34780 * 119.99942 * 85.62591 * 5 4 2 8 8 C 1.46501 * 119.99783 * 5.60555 * 7 5 4 9 9 C 1.50700 * 109.47441 * 96.78870 * 8 7 5 10 10 H 1.08004 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00379 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99851 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00207 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47507 * 59.99358 * 13 11 9 15 15 H 1.48503 * 109.47107 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47039 * 299.99103 * 13 11 9 17 17 C 1.46495 * 120.00203 * 185.59909 * 7 5 4 18 18 C 1.52995 * 109.47246 * 94.80229 * 17 7 5 19 19 C 1.47194 * 109.47509 * 184.96459 * 18 17 7 20 20 N 7.29868 * 60.01675 * 66.44303 * 2 1 3 21 21 C 1.53779 * 113.68786 * 75.53447 * 4 2 1 22 22 C 1.53776 * 87.08393 * 89.12599 * 21 4 2 23 23 C 1.53777 * 113.61345 * 173.06749 * 4 2 1 24 24 H 1.09001 * 109.47232 * 292.24369 * 1 2 3 25 25 H 1.09004 * 109.46907 * 52.23802 * 1 2 3 26 26 H 1.09001 * 109.47577 * 172.24236 * 1 2 3 27 27 H 1.08996 * 109.47232 * 239.99687 * 2 1 3 28 28 H 1.09003 * 109.46892 * 59.99605 * 3 2 1 29 29 H 1.08991 * 109.47505 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46662 * 300.00172 * 3 2 1 31 31 H 1.09003 * 109.47027 * 216.78224 * 8 7 5 32 32 H 1.08992 * 109.47211 * 336.78166 * 8 7 5 33 33 H 0.97002 * 120.00304 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.47248 * 214.80741 * 17 7 5 35 35 H 1.09008 * 109.47180 * 334.80506 * 17 7 5 36 36 H 1.09002 * 109.47249 * 304.96694 * 18 17 7 37 37 H 1.08997 * 109.46933 * 64.96333 * 18 17 7 38 38 H 1.09001 * 113.61942 * 203.67373 * 21 4 2 39 39 H 1.09007 * 113.61457 * 334.57658 * 21 4 2 40 40 H 1.09001 * 113.61566 * 270.88701 * 22 21 4 41 41 H 1.08996 * 113.61694 * 139.97904 * 22 21 4 42 42 H 1.08997 * 113.61583 * 25.35343 * 23 4 2 43 43 H 1.09005 * 113.61230 * 156.25751 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4979 -0.1334 2.5267 6 8 2.1391 0.7003 3.1305 7 7 0.3030 -0.5382 3.0008 8 6 -0.4122 -1.6352 2.3441 9 6 -0.1335 -2.9243 3.0732 10 1 0.5121 -2.9263 3.9391 11 6 -0.7018 -4.1013 2.6345 12 7 -1.4876 -4.0990 1.5799 13 14 -0.3558 -5.6993 3.5379 14 1 -0.8150 -5.5819 4.9451 15 1 -1.0808 -6.8113 2.8722 16 1 1.1032 -5.9751 3.5147 17 6 -0.2806 0.1187 4.1730 18 6 -1.2404 1.2190 3.7159 19 6 -1.7354 1.9570 4.8894 20 7 -2.1175 2.5266 5.7951 21 6 1.9143 -2.2519 1.1736 22 6 3.3132 -2.2567 0.5350 23 6 3.5641 -0.9257 1.2635 24 1 -0.3634 0.3890 0.9512 25 1 -0.3633 0.6294 -0.8125 26 1 -0.3634 -1.0182 -0.1387 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 -1.4830 -1.4325 2.3611 32 1 -0.0751 -1.7218 1.3112 33 1 -1.8878 -4.9270 1.2714 34 1 -0.8255 -0.6150 4.7670 35 1 0.5138 0.5574 4.7769 36 1 -0.7164 1.9047 3.0500 37 1 -2.0816 0.7708 3.1872 38 1 1.8783 -2.7360 2.1496 39 1 1.1265 -2.5927 0.5017 40 1 3.2978 -2.1639 -0.5509 41 1 3.9490 -3.0710 0.8823 42 1 4.1082 -0.1957 0.6642 43 1 3.9790 -1.0471 2.2641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142650674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:52 Heat of formation + Delta-G solvation = 7.849621 kcal Electronic energy + Delta-G solvation = -23477.984341 eV Core-core repulsion = 20331.113568 eV Total energy + Delta-G solvation = -3146.870773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65850 -37.58284 -36.50753 -35.27606 -33.52430 -32.87891 -31.12559 -27.67641 -26.90124 -26.07895 -24.58060 -23.66057 -22.81789 -21.14632 -19.36738 -17.82180 -17.16406 -16.67345 -15.98870 -15.57152 -15.14510 -14.90243 -14.60135 -14.21392 -13.88801 -13.41898 -13.10508 -12.91688 -12.86163 -12.48303 -12.35188 -12.11429 -11.82421 -11.66735 -11.62972 -11.46682 -11.33878 -11.12812 -10.99546 -10.94140 -10.78027 -10.64227 -10.50757 -10.33805 -10.06935 -9.74648 -9.61500 -9.41071 -8.78233 -8.51047 -7.81348 -6.22705 -4.26175 2.85921 2.95619 3.21158 3.26855 3.28752 3.38599 3.73802 4.29198 4.40244 4.88182 5.00257 5.10543 5.16788 5.24349 5.33692 5.40165 5.44626 5.56009 5.68298 5.73090 5.75797 5.96719 5.99168 6.06336 6.13939 6.21780 6.29806 6.32623 6.35088 6.37863 6.45523 6.59163 6.67136 6.74676 6.78910 6.94078 7.19211 7.26020 7.50283 7.71172 7.72025 8.02529 8.28685 8.74128 8.97212 9.38327 10.83677 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.008941 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.248969 B = 3130.732945 C = 4715.454019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.095 4.095 5 C 0.536 3.464 6 O -0.570 6.570 7 N -0.594 5.594 8 C 0.212 3.788 9 C -0.534 4.534 10 H 0.059 0.941 11 C 0.070 3.930 12 N -0.888 5.888 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.122 3.878 18 C -0.045 4.045 19 C 0.222 3.778 20 N -0.451 5.451 21 C -0.114 4.114 22 C -0.154 4.154 23 C -0.111 4.111 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.265 0.735 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.188 4.770 -5.604 8.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.081 4.081 3 C -0.203 4.203 4 C -0.098 4.098 5 C 0.325 3.675 6 O -0.451 6.451 7 N -0.324 5.324 8 C 0.093 3.907 9 C -0.573 4.573 10 H 0.077 0.923 11 C -0.134 4.134 12 N -0.526 5.526 13 Si 0.717 3.283 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.004 4.004 18 C -0.087 4.087 19 C -0.096 4.096 20 N -0.129 5.129 21 C -0.151 4.151 22 C -0.191 4.191 23 C -0.149 4.149 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.803 5.913 -4.057 8.117 hybrid contribution 0.121 -1.292 0.159 1.307 sum 3.925 4.621 -3.898 7.208 Atomic orbital electron populations 1.22218 0.94587 1.02980 1.01868 1.20771 0.96220 0.95505 0.95559 1.21840 1.01038 0.95989 1.01426 1.22018 0.96870 0.97893 0.93023 1.20355 0.80389 0.80735 0.85999 1.90582 1.58807 1.35121 1.60565 1.48210 1.19717 1.35295 1.29135 1.20218 0.92254 0.82589 0.95611 1.21394 1.29809 0.92192 1.13886 0.92277 1.24833 0.94796 0.98799 0.94940 1.69879 1.31034 1.27994 1.23691 0.86694 0.78641 0.82995 0.80014 1.20292 1.21210 1.20076 1.21095 0.96135 0.93760 0.89422 1.19794 1.01363 0.97181 0.90318 1.29131 0.92809 0.93241 0.94443 1.81174 1.10018 1.10446 1.11234 1.23417 0.95351 0.92256 1.04115 1.22973 0.99497 0.97276 0.99372 1.22771 0.93935 0.97209 1.00944 0.91946 0.93320 0.90591 0.90590 0.92449 0.92725 0.93113 0.95216 0.90531 0.92485 0.89449 0.90003 0.87645 0.86967 0.86836 0.89913 0.90884 0.91934 0.91697 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 7.59 37.16 0.28 -2.01 16 2 C -0.06 -0.88 2.33 -90.62 -0.21 -1.09 16 3 C -0.15 -1.92 8.89 37.16 0.33 -1.59 16 4 C -0.10 -1.55 0.26 -154.85 -0.04 -1.59 16 5 C 0.54 9.90 5.08 -10.98 -0.06 9.84 16 6 O -0.57 -11.73 15.89 5.56 0.09 -11.64 16 7 N -0.59 -10.71 1.77 -175.07 -0.31 -11.02 16 8 C 0.21 4.26 3.32 -5.19 -0.02 4.25 16 9 C -0.53 -12.29 6.64 -34.44 -0.23 -12.52 16 10 H 0.06 1.42 7.81 -52.48 -0.41 1.01 16 11 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -22.07 13.29 55.43 0.74 -21.33 16 13 Si 0.89 19.33 29.54 -169.99 -5.02 14.31 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 15 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 C 0.12 1.96 5.47 -4.05 -0.02 1.93 16 18 C -0.05 -0.59 6.02 -29.52 -0.18 -0.77 16 19 C 0.22 3.25 15.43 -20.76 -0.32 2.93 16 20 N -0.45 -7.64 18.54 42.16 0.78 -6.86 16 21 C -0.11 -2.01 4.47 -25.92 -0.12 -2.12 16 22 C -0.15 -2.25 7.73 -25.92 -0.20 -2.45 16 23 C -0.11 -1.69 6.76 -25.92 -0.18 -1.87 16 24 H 0.06 0.93 5.70 -51.93 -0.30 0.64 16 25 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 26 H 0.08 1.22 6.16 -51.93 -0.32 0.90 16 27 H 0.08 1.00 7.31 -51.93 -0.38 0.62 16 28 H 0.06 0.84 7.30 -51.93 -0.38 0.47 16 29 H 0.05 0.70 6.84 -51.93 -0.36 0.35 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.08 1.52 1.54 -51.93 -0.08 1.44 16 33 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 34 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 35 H 0.08 1.38 7.22 -51.92 -0.37 1.01 16 36 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.11 2.31 5.79 -51.93 -0.30 2.00 16 39 H 0.08 1.56 6.56 -51.93 -0.34 1.22 16 40 H 0.07 0.96 7.61 -51.93 -0.40 0.56 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.90 6.83 -51.93 -0.35 0.54 16 43 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -26.37 335.76 -6.21 -32.58 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.50 Total: 4.39 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.05 Total: -5.48 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 1.21 Total: -39.21 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.37 -6.21 -32.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142650674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.431 kcal (2) G-P(sol) polarization free energy of solvation -26.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds