Wall clock time and date at job start Tue Mar 31 2020 00:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47294 * 2 1 4 4 C 1.53002 * 109.47119 * 119.99608 * 2 1 3 5 5 C 1.50700 * 112.85244 * 304.26706 * 4 2 1 6 6 O 1.21273 * 119.99886 * 265.35712 * 5 4 2 7 7 N 1.34780 * 119.99942 * 85.62591 * 5 4 2 8 8 C 1.46501 * 119.99783 * 5.60555 * 7 5 4 9 9 C 1.50700 * 109.47441 * 96.78870 * 8 7 5 10 10 H 1.08004 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00379 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99851 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00207 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47507 * 59.99358 * 13 11 9 15 15 H 1.48503 * 109.47107 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47039 * 299.99103 * 13 11 9 17 17 C 1.46495 * 120.00203 * 185.59909 * 7 5 4 18 18 C 1.52995 * 109.47246 * 94.80229 * 17 7 5 19 19 C 1.47194 * 109.47509 * 184.96459 * 18 17 7 20 20 N 7.29868 * 60.01675 * 66.44303 * 2 1 3 21 21 C 1.53779 * 113.68786 * 75.53447 * 4 2 1 22 22 C 1.53776 * 87.08393 * 89.12599 * 21 4 2 23 23 C 1.53777 * 113.61345 * 173.06749 * 4 2 1 24 24 H 1.09001 * 109.47232 * 292.24369 * 1 2 3 25 25 H 1.09004 * 109.46907 * 52.23802 * 1 2 3 26 26 H 1.09001 * 109.47577 * 172.24236 * 1 2 3 27 27 H 1.08996 * 109.47232 * 239.99687 * 2 1 3 28 28 H 1.09003 * 109.46892 * 59.99605 * 3 2 1 29 29 H 1.08991 * 109.47505 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46662 * 300.00172 * 3 2 1 31 31 H 1.09003 * 109.47027 * 216.78224 * 8 7 5 32 32 H 1.08992 * 109.47211 * 336.78166 * 8 7 5 33 33 H 0.97002 * 120.00304 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.47248 * 214.80741 * 17 7 5 35 35 H 1.09008 * 109.47180 * 334.80506 * 17 7 5 36 36 H 1.09002 * 109.47249 * 304.96694 * 18 17 7 37 37 H 1.08997 * 109.46933 * 64.96333 * 18 17 7 38 38 H 1.09001 * 113.61942 * 203.67373 * 21 4 2 39 39 H 1.09007 * 113.61457 * 334.57658 * 21 4 2 40 40 H 1.09001 * 113.61566 * 270.88701 * 22 21 4 41 41 H 1.08996 * 113.61694 * 139.97904 * 22 21 4 42 42 H 1.08997 * 113.61583 * 25.35343 * 23 4 2 43 43 H 1.09005 * 113.61230 * 156.25751 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4979 -0.1334 2.5267 6 8 2.1391 0.7003 3.1305 7 7 0.3030 -0.5382 3.0008 8 6 -0.4122 -1.6352 2.3441 9 6 -0.1335 -2.9243 3.0732 10 1 0.5121 -2.9263 3.9391 11 6 -0.7018 -4.1013 2.6345 12 7 -1.4876 -4.0990 1.5799 13 14 -0.3558 -5.6993 3.5379 14 1 -0.8150 -5.5819 4.9451 15 1 -1.0808 -6.8113 2.8722 16 1 1.1032 -5.9751 3.5147 17 6 -0.2806 0.1187 4.1730 18 6 -1.2404 1.2190 3.7159 19 6 -1.7354 1.9570 4.8894 20 7 -2.1175 2.5266 5.7951 21 6 1.9143 -2.2519 1.1736 22 6 3.3132 -2.2567 0.5350 23 6 3.5641 -0.9257 1.2635 24 1 -0.3634 0.3890 0.9512 25 1 -0.3633 0.6294 -0.8125 26 1 -0.3634 -1.0182 -0.1387 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 -1.4830 -1.4325 2.3611 32 1 -0.0751 -1.7218 1.3112 33 1 -1.8878 -4.9270 1.2714 34 1 -0.8255 -0.6150 4.7670 35 1 0.5138 0.5574 4.7769 36 1 -0.7164 1.9047 3.0500 37 1 -2.0816 0.7708 3.1872 38 1 1.8783 -2.7360 2.1496 39 1 1.1265 -2.5927 0.5017 40 1 3.2978 -2.1639 -0.5509 41 1 3.9490 -3.0710 0.8823 42 1 4.1082 -0.1957 0.6642 43 1 3.9790 -1.0471 2.2641 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142650674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:51 Heat of formation + Delta-G solvation = -4.029970 kcal Electronic energy + Delta-G solvation = -23478.499479 eV Core-core repulsion = 20331.113568 eV Total energy + Delta-G solvation = -3147.385911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02715 -38.93627 -37.83652 -36.79458 -34.72844 -34.55446 -32.51290 -29.20693 -28.21137 -27.36245 -25.87218 -25.10644 -24.38410 -22.32405 -20.72246 -19.24413 -18.49730 -18.31471 -17.39160 -17.04546 -16.50459 -16.34760 -16.02957 -15.54845 -15.22547 -14.69820 -14.36958 -14.24529 -14.17881 -14.00964 -13.69223 -13.54253 -13.17984 -13.05723 -12.92974 -12.83044 -12.71362 -12.56837 -12.48374 -12.33388 -12.15225 -11.93549 -11.84685 -11.72422 -11.60979 -11.27386 -10.93468 -10.74643 -10.43474 -10.12164 -9.37048 -8.07938 -6.13902 1.44664 1.48984 1.52664 1.60602 1.75143 1.92239 2.34444 2.51234 3.16190 3.23578 3.63529 3.74357 3.94788 3.97304 4.11166 4.15735 4.22709 4.37867 4.52876 4.56832 4.58844 4.84459 4.89363 4.90439 4.92545 5.01730 5.10714 5.10967 5.13895 5.18299 5.20661 5.30027 5.38909 5.51488 5.54295 5.60863 5.64733 5.78233 5.86901 5.98015 6.24286 6.51809 6.70575 6.95868 7.43581 7.55579 8.96629 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.008941 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.248969 B = 3130.732945 C = 4715.454019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.095 4.095 5 C 0.533 3.467 6 O -0.593 6.593 7 N -0.593 5.593 8 C 0.225 3.775 9 C -0.532 4.532 10 H 0.043 0.957 11 C 0.036 3.964 12 N -0.908 5.908 13 Si 0.930 3.070 14 H -0.282 1.282 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.118 3.882 18 C -0.030 4.030 19 C 0.244 3.756 20 N -0.488 5.488 21 C -0.119 4.119 22 C -0.138 4.138 23 C -0.108 4.108 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.020 0.980 32 H 0.086 0.914 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 5.324 -7.185 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.078 4.078 3 C -0.197 4.197 4 C -0.098 4.098 5 C 0.323 3.677 6 O -0.475 6.475 7 N -0.323 5.323 8 C 0.105 3.895 9 C -0.571 4.571 10 H 0.061 0.939 11 C -0.165 4.165 12 N -0.548 5.548 13 Si 0.758 3.242 14 H -0.208 1.208 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.007 4.007 18 C -0.071 4.071 19 C -0.073 4.073 20 N -0.167 5.167 21 C -0.156 4.156 22 C -0.175 4.175 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.400 6.466 -5.627 9.635 hybrid contribution -0.037 -1.474 0.690 1.628 sum 4.362 4.993 -4.937 8.266 Atomic orbital electron populations 1.22159 0.94801 1.02109 1.02299 1.20828 0.96021 0.96188 0.94780 1.21793 1.01290 0.94999 1.01651 1.22170 0.97648 0.96890 0.93090 1.20767 0.80037 0.80340 0.86544 1.90568 1.59237 1.36271 1.61419 1.48163 1.19782 1.34905 1.29420 1.19993 0.91712 0.81945 0.95827 1.21543 1.28755 0.93544 1.13217 0.93857 1.25260 0.95040 1.00641 0.95537 1.69934 1.31974 1.28278 1.24588 0.86040 0.78306 0.80948 0.78910 1.20756 1.21094 1.20093 1.21135 0.96364 0.94375 0.88865 1.19707 1.01281 0.96296 0.89786 1.29241 0.91730 0.92349 0.93972 1.81199 1.11410 1.11794 1.12250 1.23206 0.96983 0.93099 1.02326 1.22939 0.97029 0.97014 1.00553 1.22742 0.93215 0.98145 1.00523 0.92904 0.90938 0.92595 0.88857 0.94295 0.92274 0.90768 0.96164 0.89707 0.92636 0.90091 0.90923 0.86188 0.85147 0.90115 0.91461 0.88436 0.91443 0.89634 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 7.59 71.98 0.55 -3.63 16 2 C -0.06 -1.54 2.33 -10.79 -0.03 -1.56 16 3 C -0.14 -3.27 8.89 71.98 0.64 -2.63 16 4 C -0.10 -2.99 0.26 -52.40 -0.01 -3.00 16 5 C 0.53 19.43 5.08 87.66 0.44 19.87 16 6 O -0.59 -24.14 15.89 -3.01 -0.05 -24.19 16 7 N -0.59 -21.34 1.77 -826.18 -1.46 -22.81 16 8 C 0.22 9.05 3.32 85.63 0.28 9.34 16 9 C -0.53 -24.75 6.64 25.60 0.17 -24.58 16 10 H 0.04 2.12 7.81 -2.91 -0.02 2.10 16 11 C 0.04 1.74 5.46 84.65 0.46 2.20 16 12 N -0.91 -45.18 13.29 21.45 0.28 -44.90 16 13 Si 0.93 39.73 29.54 68.60 2.03 41.76 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 17 C 0.12 3.77 5.47 86.38 0.47 4.24 16 18 C -0.03 -0.74 6.02 28.79 0.17 -0.57 16 19 C 0.24 6.93 15.43 89.44 1.38 8.31 16 20 N -0.49 -16.28 18.54 20.01 0.37 -15.90 16 21 C -0.12 -4.10 4.47 31.12 0.14 -3.96 16 22 C -0.14 -3.75 7.73 31.12 0.24 -3.51 16 23 C -0.11 -3.13 6.76 31.12 0.21 -2.91 16 24 H 0.05 1.49 5.70 -2.39 -0.01 1.48 16 25 H 0.07 1.57 8.13 -2.38 -0.02 1.55 16 26 H 0.06 1.72 6.16 -2.39 -0.01 1.71 16 27 H 0.09 2.13 7.31 -2.39 -0.02 2.11 16 28 H 0.04 1.05 7.30 -2.39 -0.02 1.03 16 29 H 0.06 1.32 6.84 -2.39 -0.02 1.31 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 32 H 0.09 3.36 1.54 -2.39 0.00 3.36 16 33 H 0.26 12.80 8.31 -92.71 -0.77 12.03 16 34 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 35 H 0.07 2.46 7.22 -2.38 -0.02 2.45 16 36 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.08 3.33 5.79 -2.39 -0.01 3.31 16 39 H 0.07 2.52 6.56 -2.38 -0.02 2.50 16 40 H 0.10 2.21 7.61 -2.39 -0.02 2.19 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.09 2.11 6.83 -2.39 -0.02 2.10 16 43 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 Total: -1.00 -56.13 335.76 7.31 -48.82 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.01 Total: 19.60 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.13 Total: -2.39 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -0.81 Total: -83.61 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -56.13 7.31 -48.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142650674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.792 kcal (2) G-P(sol) polarization free energy of solvation -56.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds