Wall clock time and date at job start Tue Mar 31 2020 00:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47422 * 2 1 4 4 C 1.32996 * 120.00262 * 124.47681 * 3 2 1 5 5 C 1.50698 * 119.99843 * 6.11454 * 4 3 2 6 6 C 1.47096 * 119.99892 * 186.11898 * 4 3 2 7 7 O 1.21612 * 120.00324 * 359.97438 * 6 4 3 8 8 N 1.34782 * 119.99905 * 179.97438 * 6 4 3 9 9 C 1.47890 * 134.34384 * 179.97438 * 8 6 4 10 10 C 1.52376 * 85.72991 * 156.54790 * 9 8 6 11 11 C 1.48159 * 134.44487 * 359.88874 * 8 6 4 12 12 C 1.53652 * 116.39581 * 141.28907 * 10 9 8 13 13 C 1.54594 * 102.73422 * 162.91896 * 12 10 9 14 14 N 1.47140 * 107.36597 * 339.24718 * 13 12 10 15 15 C 1.36934 * 125.58940 * 179.09586 * 14 13 12 16 16 H 1.08001 * 120.00214 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99803 * 359.97438 * 15 14 13 18 18 N 1.31615 * 120.00240 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99603 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46754 * 90.00096 * 19 17 15 21 21 H 1.48498 * 109.46724 * 209.99624 * 19 17 15 22 22 H 1.48495 * 109.47385 * 329.99743 * 19 17 15 23 23 C 1.47723 * 108.82236 * 359.07079 * 14 13 12 24 24 H 1.09001 * 109.46824 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47182 * 299.99960 * 1 2 3 26 26 H 1.09000 * 109.46949 * 60.00081 * 1 2 3 27 27 H 1.09007 * 109.47596 * 239.99932 * 2 1 3 28 28 H 1.09001 * 109.47552 * 120.00374 * 2 1 3 29 29 H 1.08006 * 119.99996 * 304.48348 * 3 2 1 30 30 H 1.08993 * 109.47500 * 264.93566 * 5 4 3 31 31 H 1.09004 * 109.47117 * 24.94086 * 5 4 3 32 32 H 1.09001 * 109.46750 * 144.92878 * 5 4 3 33 33 H 1.09003 * 113.84888 * 42.32653 * 9 8 6 34 34 H 1.08993 * 113.85720 * 270.78204 * 9 8 6 35 35 H 1.08994 * 113.74022 * 89.28259 * 11 8 6 36 36 H 1.09001 * 114.04709 * 317.66230 * 11 8 6 37 37 H 1.09006 * 110.76045 * 281.23344 * 12 10 9 38 38 H 1.09001 * 110.76047 * 44.60299 * 12 10 9 39 39 H 1.09005 * 109.87094 * 98.68821 * 13 12 10 40 40 H 1.09001 * 109.86797 * 219.66396 * 13 12 10 41 41 H 0.97007 * 120.00067 * 180.02562 * 18 17 15 42 42 H 1.09000 * 110.40597 * 263.65853 * 23 14 13 43 43 H 1.09007 * 110.39846 * 141.25102 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8688 1.8304 0.9495 5 6 3.4223 0.8423 1.9436 6 6 3.2534 3.2480 1.0292 7 8 2.8070 4.0453 0.2268 8 7 4.1006 3.6632 1.9917 9 6 4.6863 4.9703 2.3598 10 6 4.8581 4.3732 3.7511 11 6 4.8156 2.9943 3.1037 12 6 6.1515 4.7381 4.4961 13 6 5.8165 4.3715 5.9601 14 7 4.3504 4.3375 6.0799 15 6 3.6505 4.0335 7.2169 16 1 2.5706 4.0360 7.2032 17 6 4.3291 3.7220 8.3871 18 7 5.6451 3.7183 8.4037 19 14 3.3743 3.3079 9.9384 20 1 3.1222 1.8452 9.9888 21 1 4.1631 3.7155 11.1287 22 1 2.0788 4.0336 9.9309 23 6 3.7572 4.6858 4.7726 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.7131 2.1065 -0.7710 30 1 2.8090 0.8511 2.8446 31 1 3.4126 -0.1564 1.5070 32 1 4.4458 1.1176 2.1979 33 1 3.9777 5.7977 2.3198 34 1 5.6270 5.1898 1.8550 35 1 5.7959 2.6076 2.8254 36 1 4.2105 2.2698 3.6488 37 1 6.9888 4.1433 4.1307 38 1 6.3634 5.8033 4.4033 39 1 6.2305 3.3923 6.2009 40 1 6.2279 5.1233 6.6337 41 1 6.1193 3.5003 9.2214 42 1 3.4999 5.7445 4.7419 43 1 2.8757 4.0740 4.5802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147106046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:19 Heat of formation + Delta-G solvation = 22.436451 kcal Electronic energy + Delta-G solvation = -22159.201359 eV Core-core repulsion = 19012.963119 eV Total energy + Delta-G solvation = -3146.238241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88679 -39.80331 -37.28943 -37.02018 -34.14893 -32.84480 -31.29099 -29.82657 -28.34766 -27.65220 -26.94696 -25.75323 -24.37933 -22.13522 -21.31262 -19.74293 -19.26503 -18.71972 -17.59589 -17.48338 -16.75613 -16.63809 -16.06620 -15.60266 -15.30681 -15.11807 -14.82058 -14.32484 -14.17997 -14.07311 -13.68992 -13.67003 -13.47228 -13.21177 -12.99727 -12.91003 -12.79181 -12.70209 -12.28861 -12.22360 -12.01753 -11.93955 -11.76179 -11.65540 -11.63392 -11.20792 -10.73781 -10.63701 -10.11075 -9.61895 -8.86784 -7.82636 -5.17479 0.35360 1.47839 1.48715 1.57380 1.80167 2.21424 2.50584 3.25817 3.36054 3.46625 3.66694 3.73049 3.94517 4.10650 4.15111 4.19700 4.27894 4.33600 4.43396 4.52499 4.55830 4.62237 4.70291 4.74750 4.78142 4.82564 4.88976 4.96522 5.03573 5.04514 5.08198 5.12308 5.15361 5.23567 5.33514 5.47698 5.54844 5.62286 5.74017 5.83765 6.23017 6.65855 7.08600 7.14181 7.79731 8.43828 9.27060 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.004502 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.850227 B = 6218.001495 C = 7190.120461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.065 4.065 4 C -0.197 4.197 5 C -0.121 4.121 6 C 0.564 3.436 7 O -0.598 6.598 8 N -0.637 5.637 9 C 0.127 3.873 10 C -0.100 4.100 11 C 0.127 3.873 12 C -0.112 4.112 13 C 0.185 3.815 14 N -0.624 5.624 15 C -0.243 4.243 16 H 0.075 0.925 17 C -0.058 4.058 18 N -0.946 5.946 19 Si 0.973 3.027 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.274 1.274 23 C 0.160 3.840 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.019 0.981 40 H 0.005 0.995 41 H 0.247 0.753 42 H 0.021 0.979 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 -7.305 -15.726 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.085 4.085 4 C -0.200 4.200 5 C -0.178 4.178 6 C 0.357 3.643 7 O -0.482 6.482 8 N -0.369 5.369 9 C 0.004 3.996 10 C -0.102 4.102 11 C 0.006 3.994 12 C -0.151 4.151 13 C 0.060 3.940 14 N -0.350 5.350 15 C -0.372 4.372 16 H 0.093 0.907 17 C -0.252 4.252 18 N -0.595 5.595 19 Si 0.802 3.198 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.199 1.199 23 C 0.035 3.965 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.037 0.963 40 H 0.023 0.977 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.334 -7.004 -16.055 17.671 hybrid contribution -0.461 0.271 1.222 1.334 sum -2.796 -6.733 -14.834 16.528 Atomic orbital electron populations 1.21697 0.93989 1.02905 1.01849 1.20936 0.96819 0.91683 1.04630 1.23760 0.91374 0.98695 0.94708 1.21439 1.04054 0.92338 1.02128 1.21156 1.01263 0.98060 0.97274 1.18624 0.77841 0.89294 0.78517 1.90718 1.57565 1.57331 1.42600 1.50178 1.44037 1.12825 1.29893 1.23061 0.98748 0.86921 0.90822 1.22319 0.97470 0.97011 0.93379 1.23351 0.97308 0.95669 0.83077 1.22526 0.95903 1.02152 0.94481 1.20998 0.83076 0.97761 0.92161 1.44829 1.02663 1.81238 1.06315 1.19366 0.90656 1.39219 0.87954 0.90689 1.25529 0.96635 1.02423 1.00606 1.70161 1.06451 1.55868 1.27024 0.85165 0.77625 0.77891 0.79164 1.21086 1.22036 1.19923 1.21102 0.94104 0.96744 0.84546 0.90410 0.93644 0.92340 0.88446 0.89433 0.87159 0.91670 0.88749 0.90635 0.90750 0.86713 0.86548 0.89724 0.88538 0.90269 0.96313 0.97672 0.94361 0.96104 0.95135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.89 71.98 0.71 -1.38 16 2 C -0.10 -1.55 6.03 29.85 0.18 -1.37 16 3 C -0.07 -1.45 9.08 24.52 0.22 -1.23 16 4 C -0.20 -5.03 5.99 -18.71 -0.11 -5.14 16 5 C -0.12 -2.49 7.72 71.24 0.55 -1.94 16 6 C 0.56 18.29 7.98 86.57 0.69 18.98 16 7 O -0.60 -23.53 16.95 -4.07 -0.07 -23.60 16 8 N -0.64 -18.68 3.63 -863.44 -3.14 -21.81 16 9 C 0.13 3.43 8.20 85.91 0.70 4.14 16 10 C -0.10 -3.09 0.99 -52.16 -0.05 -3.15 16 11 C 0.13 3.42 5.50 85.86 0.47 3.89 16 12 C -0.11 -3.55 6.36 31.36 0.20 -3.35 16 13 C 0.18 8.54 5.39 86.80 0.47 9.01 16 14 N -0.62 -31.11 3.41 -693.34 -2.36 -33.47 16 15 C -0.24 -13.45 10.28 84.03 0.86 -12.59 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 18 N -0.95 -55.27 10.30 21.65 0.22 -55.05 16 19 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 C 0.16 6.48 6.63 86.28 0.57 7.05 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.09 1.20 5.54 -2.39 -0.01 1.19 16 29 H 0.11 2.74 7.51 -2.91 -0.02 2.72 16 30 H 0.06 1.44 7.87 -2.39 -0.02 1.42 16 31 H 0.09 1.45 6.08 -2.38 -0.01 1.43 16 32 H 0.07 1.52 5.24 -2.39 -0.01 1.51 16 33 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 34 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.12 2.47 7.94 -2.39 -0.02 2.45 16 36 H 0.08 2.46 6.39 -2.39 -0.02 2.44 16 37 H 0.10 2.49 7.99 -2.38 -0.02 2.47 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.02 0.96 7.38 -2.38 -0.02 0.94 16 40 H 0.01 0.27 7.49 -2.39 -0.02 0.25 16 41 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.03 1.27 8.07 -2.38 -0.02 1.25 16 Total: -1.00 -70.39 339.47 3.60 -66.78 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.98 Total: 9.87 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 5.94 Total: 10.13 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -5.27 Total: -110.33 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.07 Total: -23.60 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.39 3.60 -66.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147106046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.218 kcal (2) G-P(sol) polarization free energy of solvation -70.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds