Wall clock time and date at job start Tue Mar 31 2020 00:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.47079 * 2 1 4 4 C 1.50698 * 119.99767 * 275.00141 * 3 2 1 5 5 C 1.32992 * 120.00321 * 94.99176 * 3 2 1 6 6 C 1.47095 * 120.00169 * 185.63557 * 5 3 2 7 7 O 1.21616 * 120.00207 * 354.74761 * 6 5 3 8 8 N 1.34774 * 120.00285 * 174.74171 * 6 5 3 9 9 C 1.47848 * 134.36690 * 180.02562 * 8 6 5 10 10 C 1.52563 * 85.66347 * 156.37429 * 9 8 6 11 11 C 1.47856 * 134.36026 * 0.02562 * 8 6 5 12 12 C 1.53923 * 115.92123 * 264.97887 * 10 9 8 13 13 C 1.55157 * 101.43222 * 264.39377 * 12 10 9 14 14 N 1.47547 * 105.00955 * 324.38323 * 13 12 10 15 15 C 1.36939 * 125.65599 * 203.91093 * 14 13 12 16 16 H 1.08000 * 119.99668 * 179.97438 * 15 14 13 17 17 C 1.38812 * 120.00091 * 0.02562 * 15 14 13 18 18 N 1.31616 * 119.99944 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47285 * 59.99517 * 19 17 15 21 21 H 1.48494 * 109.46995 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47296 * 299.99800 * 19 17 15 23 23 C 1.47366 * 108.68234 * 23.91190 * 14 13 12 24 24 H 1.08994 * 109.47132 * 60.00415 * 1 2 3 25 25 H 1.09001 * 109.46525 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46988 * 300.00046 * 1 2 3 27 27 H 1.08998 * 109.47704 * 239.99756 * 2 1 3 28 28 H 1.09003 * 109.47709 * 119.99526 * 2 1 3 29 29 H 1.08996 * 109.47145 * 238.22870 * 4 3 2 30 30 H 1.09001 * 109.47217 * 358.22734 * 4 3 2 31 31 H 1.08998 * 109.47432 * 118.22538 * 4 3 2 32 32 H 1.08003 * 119.99621 * 5.64939 * 5 3 2 33 33 H 1.09005 * 113.84016 * 42.18872 * 9 8 6 34 34 H 1.09004 * 113.95933 * 270.57218 * 9 8 6 35 35 H 1.09001 * 113.83960 * 89.44090 * 11 8 6 36 36 H 1.08996 * 113.83836 * 317.81181 * 11 8 6 37 37 H 1.08999 * 111.00791 * 146.36935 * 12 10 9 38 38 H 1.08995 * 111.04569 * 22.44415 * 12 10 9 39 39 H 1.09000 * 110.33571 * 205.50044 * 13 12 10 40 40 H 1.09004 * 110.41750 * 83.30724 * 13 12 10 41 41 H 0.97001 * 119.99752 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.97922 * 117.31107 * 23 14 13 43 43 H 1.08997 * 109.98058 * 238.57487 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1762 2.1692 -1.3001 5 6 2.3485 2.0145 1.1473 6 6 2.7198 3.4377 1.1612 7 8 2.8307 4.0475 0.1149 8 7 2.9370 4.0661 2.3336 9 6 3.3128 5.4446 2.7136 10 6 2.6616 5.1283 4.0565 11 6 2.8943 3.6515 3.7522 12 6 1.1927 5.5613 4.2106 13 6 1.3493 6.9351 4.9146 14 7 2.5065 6.7730 5.8155 15 6 2.7492 7.5103 6.9437 16 1 3.6286 7.3130 7.5388 17 6 1.8645 8.5105 7.3229 18 7 0.7926 8.7505 6.5979 19 14 2.1954 9.5157 8.8623 20 1 3.4953 10.2201 8.7236 21 1 1.1099 10.5123 9.0454 22 1 2.2443 8.6141 10.0412 23 6 3.3576 5.6861 5.2998 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8935 -0.5138 0.8900 29 1 3.2099 2.4934 -1.4203 30 1 1.9020 1.5152 -2.1280 31 1 1.5208 3.0400 -1.2927 32 1 2.3328 1.4514 2.0688 33 1 2.7946 6.2156 2.1433 34 1 4.3887 5.6095 2.7735 35 1 3.8430 3.2683 4.1279 36 1 2.0468 3.0120 3.9989 37 1 0.6425 4.8605 4.8384 38 1 0.7133 5.6725 3.2380 39 1 0.4529 7.1711 5.4882 40 1 1.5464 7.7177 4.1819 41 1 0.1742 9.4492 6.8631 42 1 4.3397 6.0768 5.0332 43 1 3.4596 4.9041 6.0522 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147489802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:48 Heat of formation + Delta-G solvation = 36.963771 kcal Electronic energy + Delta-G solvation = -21781.866830 eV Core-core repulsion = 18636.258541 eV Total energy + Delta-G solvation = -3145.608289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50437 -38.65899 -36.21641 -35.48302 -32.20163 -31.11877 -29.73876 -28.77078 -27.56748 -26.13162 -25.57477 -24.15636 -23.41065 -20.42525 -19.96474 -18.39700 -18.08945 -16.99952 -16.58719 -15.71796 -15.44209 -14.86093 -14.70758 -14.50457 -14.31989 -13.72754 -13.68110 -13.26167 -12.86025 -12.68838 -12.45660 -12.30548 -12.11580 -11.86705 -11.81303 -11.65606 -11.55147 -11.16205 -11.13598 -10.96639 -10.76667 -10.37478 -10.11624 -9.96147 -9.84687 -9.64471 -9.31260 -9.26805 -8.65326 -8.39001 -6.84897 -5.65650 -3.07533 1.34129 3.00858 3.39131 3.40385 3.44726 3.46075 4.37992 4.47581 4.60900 4.68659 4.92477 4.97405 5.03345 5.06755 5.24732 5.32423 5.46932 5.48391 5.54409 5.58903 5.62462 5.64895 5.67192 5.78183 5.82869 5.87903 5.91910 5.93934 6.11689 6.21211 6.28756 6.42033 6.46743 6.53564 6.59769 6.70499 6.74982 7.50979 7.61121 7.84801 7.91718 8.34844 8.35742 9.21058 9.81833 10.46820 11.38241 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039818 B = 0.003275 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.034185 B = 8546.989466 C = 8676.002412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.038 4.038 4 C -0.113 4.113 5 C -0.221 4.221 6 C 0.563 3.437 7 O -0.550 6.550 8 N -0.637 5.637 9 C 0.126 3.874 10 C -0.102 4.102 11 C 0.115 3.885 12 C -0.119 4.119 13 C 0.154 3.846 14 N -0.604 5.604 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.151 3.849 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.013 0.987 41 H 0.253 0.747 42 H 0.026 0.974 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 -16.761 -10.737 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.040 4.040 4 C -0.170 4.170 5 C -0.241 4.241 6 C 0.356 3.644 7 O -0.431 6.431 8 N -0.371 5.371 9 C 0.005 3.995 10 C -0.104 4.104 11 C -0.008 4.008 12 C -0.157 4.157 13 C 0.029 3.971 14 N -0.330 5.330 15 C -0.352 4.352 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.025 3.975 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.031 0.969 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.186 -16.345 -11.345 19.932 hybrid contribution 0.312 0.488 0.919 1.086 sum 1.498 -15.857 -10.426 19.037 Atomic orbital electron populations 1.21712 0.94070 1.01979 1.02632 1.20745 0.96653 0.92666 1.03110 1.22533 0.90719 0.95294 0.95419 1.20999 1.03855 0.99406 0.92698 1.22343 1.08670 0.94309 0.98827 1.18190 0.77174 0.87070 0.81927 1.90759 1.53516 1.68152 1.30653 1.50045 1.68281 1.13517 1.05284 1.23029 0.99812 0.83917 0.92791 1.22482 0.99032 0.93780 0.95063 1.23121 1.01610 0.97465 0.78584 1.22702 0.92045 1.00892 1.00098 1.21979 0.93929 0.89579 0.91586 1.44579 1.23582 1.37906 1.26952 1.19027 1.06131 1.10840 0.99195 0.90496 1.24788 0.97324 0.99282 0.99229 1.69786 1.13686 1.34401 1.39191 0.86150 0.77103 0.79696 0.82521 1.21230 1.21596 1.21169 1.20993 0.93543 0.91390 0.91602 0.92309 0.92103 0.92238 0.90635 0.90841 0.90145 0.93172 0.89913 0.85998 0.90017 0.89853 0.89718 0.90083 0.91615 0.92245 0.87593 0.96921 0.93662 0.95649 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.09 -0.73 6.03 -27.88 -0.17 -0.90 16 3 C -0.04 -0.41 5.36 -101.16 -0.54 -0.95 16 4 C -0.11 -1.29 8.34 36.00 0.30 -0.99 16 5 C -0.22 -2.69 9.41 -37.81 -0.36 -3.05 16 6 C 0.56 8.81 7.96 -12.67 -0.10 8.71 16 7 O -0.55 -10.08 13.83 5.26 0.07 -10.01 16 8 N -0.64 -9.64 3.62 -187.06 -0.68 -10.31 16 9 C 0.13 2.04 8.08 -3.53 -0.03 2.01 16 10 C -0.10 -1.70 0.98 -154.68 -0.15 -1.85 16 11 C 0.12 1.52 7.79 -3.52 -0.03 1.49 16 12 C -0.12 -2.21 6.42 -25.11 -0.16 -2.37 16 13 C 0.15 3.68 5.90 -2.33 -0.01 3.66 16 14 N -0.60 -15.07 3.41 -170.34 -0.58 -15.65 16 15 C -0.22 -6.12 10.28 -15.06 -0.15 -6.27 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -26.65 10.09 55.49 0.56 -26.09 16 19 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.15 2.97 6.75 -3.56 -0.02 2.95 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.07 0.51 7.99 -51.93 -0.41 0.09 16 29 H 0.08 1.03 7.32 -51.93 -0.38 0.65 16 30 H 0.05 0.44 7.99 -51.93 -0.41 0.03 16 31 H 0.08 1.10 7.14 -51.93 -0.37 0.73 16 32 H 0.12 1.25 7.84 -52.48 -0.41 0.84 16 33 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 34 H 0.08 1.25 8.00 -51.93 -0.42 0.84 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 39 H 0.11 2.86 5.89 -51.93 -0.31 2.55 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.03 0.50 7.86 -51.93 -0.41 0.09 16 43 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -31.19 346.02 -8.90 -40.09 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.31 Total: -1.40 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.16 Total: 1.36 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.70 Total: -52.06 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.19 -8.90 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147489802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.049 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds