Wall clock time and date at job start Tue Mar 31 2020 00:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.47079 * 2 1 4 4 C 1.50698 * 119.99767 * 275.00141 * 3 2 1 5 5 C 1.32992 * 120.00321 * 94.99176 * 3 2 1 6 6 C 1.47095 * 120.00169 * 185.63557 * 5 3 2 7 7 O 1.21616 * 120.00207 * 354.74761 * 6 5 3 8 8 N 1.34774 * 120.00285 * 174.74171 * 6 5 3 9 9 C 1.47848 * 134.36690 * 180.02562 * 8 6 5 10 10 C 1.52563 * 85.66347 * 156.37429 * 9 8 6 11 11 C 1.47856 * 134.36026 * 0.02562 * 8 6 5 12 12 C 1.53923 * 115.92123 * 264.97887 * 10 9 8 13 13 C 1.55157 * 101.43222 * 264.39377 * 12 10 9 14 14 N 1.47547 * 105.00955 * 324.38323 * 13 12 10 15 15 C 1.36939 * 125.65599 * 203.91093 * 14 13 12 16 16 H 1.08000 * 119.99668 * 179.97438 * 15 14 13 17 17 C 1.38812 * 120.00091 * 0.02562 * 15 14 13 18 18 N 1.31616 * 119.99944 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47285 * 59.99517 * 19 17 15 21 21 H 1.48494 * 109.46995 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47296 * 299.99800 * 19 17 15 23 23 C 1.47366 * 108.68234 * 23.91190 * 14 13 12 24 24 H 1.08994 * 109.47132 * 60.00415 * 1 2 3 25 25 H 1.09001 * 109.46525 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46988 * 300.00046 * 1 2 3 27 27 H 1.08998 * 109.47704 * 239.99756 * 2 1 3 28 28 H 1.09003 * 109.47709 * 119.99526 * 2 1 3 29 29 H 1.08996 * 109.47145 * 238.22870 * 4 3 2 30 30 H 1.09001 * 109.47217 * 358.22734 * 4 3 2 31 31 H 1.08998 * 109.47432 * 118.22538 * 4 3 2 32 32 H 1.08003 * 119.99621 * 5.64939 * 5 3 2 33 33 H 1.09005 * 113.84016 * 42.18872 * 9 8 6 34 34 H 1.09004 * 113.95933 * 270.57218 * 9 8 6 35 35 H 1.09001 * 113.83960 * 89.44090 * 11 8 6 36 36 H 1.08996 * 113.83836 * 317.81181 * 11 8 6 37 37 H 1.08999 * 111.00791 * 146.36935 * 12 10 9 38 38 H 1.08995 * 111.04569 * 22.44415 * 12 10 9 39 39 H 1.09000 * 110.33571 * 205.50044 * 13 12 10 40 40 H 1.09004 * 110.41750 * 83.30724 * 13 12 10 41 41 H 0.97001 * 119.99752 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.97922 * 117.31107 * 23 14 13 43 43 H 1.08997 * 109.98058 * 238.57487 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1762 2.1692 -1.3001 5 6 2.3485 2.0145 1.1473 6 6 2.7198 3.4377 1.1612 7 8 2.8307 4.0475 0.1149 8 7 2.9370 4.0661 2.3336 9 6 3.3128 5.4446 2.7136 10 6 2.6616 5.1283 4.0565 11 6 2.8943 3.6515 3.7522 12 6 1.1927 5.5613 4.2106 13 6 1.3493 6.9351 4.9146 14 7 2.5065 6.7730 5.8155 15 6 2.7492 7.5103 6.9437 16 1 3.6286 7.3130 7.5388 17 6 1.8645 8.5105 7.3229 18 7 0.7926 8.7505 6.5979 19 14 2.1954 9.5157 8.8623 20 1 3.4953 10.2201 8.7236 21 1 1.1099 10.5123 9.0454 22 1 2.2443 8.6141 10.0412 23 6 3.3576 5.6861 5.2998 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8935 -0.5138 0.8900 29 1 3.2099 2.4934 -1.4203 30 1 1.9020 1.5152 -2.1280 31 1 1.5208 3.0400 -1.2927 32 1 2.3328 1.4514 2.0688 33 1 2.7946 6.2156 2.1433 34 1 4.3887 5.6095 2.7735 35 1 3.8430 3.2683 4.1279 36 1 2.0468 3.0120 3.9989 37 1 0.6425 4.8605 4.8384 38 1 0.7133 5.6725 3.2380 39 1 0.4529 7.1711 5.4882 40 1 1.5464 7.7177 4.1819 41 1 0.1742 9.4492 6.8631 42 1 4.3397 6.0768 5.0332 43 1 3.4596 4.9041 6.0522 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147489802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:47 Heat of formation + Delta-G solvation = 18.902086 kcal Electronic energy + Delta-G solvation = -21782.650044 eV Core-core repulsion = 18636.258541 eV Total energy + Delta-G solvation = -3146.391502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78168 -39.88781 -37.44245 -36.79785 -34.07448 -31.93032 -31.27209 -30.32802 -28.75437 -27.31187 -27.13756 -25.44607 -24.55150 -22.21439 -21.09004 -19.77852 -19.13166 -18.65835 -17.95861 -17.03800 -16.66144 -16.58066 -15.87456 -15.67429 -15.41305 -15.30104 -14.72578 -14.40428 -14.09316 -13.81409 -13.73192 -13.54058 -13.42439 -13.34820 -13.00917 -12.85425 -12.79837 -12.63211 -12.42916 -12.24513 -12.05839 -11.85917 -11.76074 -11.73001 -11.49145 -11.32064 -10.71112 -10.52401 -10.21328 -9.55527 -8.86161 -7.74587 -5.18648 0.40503 1.48858 1.51863 1.58127 1.85975 2.29063 2.52322 3.29590 3.41628 3.47744 3.67030 3.76168 3.88047 4.07553 4.16767 4.20324 4.32367 4.41741 4.45601 4.55937 4.60892 4.66310 4.67599 4.73835 4.80394 4.83579 4.87118 4.91719 5.04754 5.07428 5.10591 5.19248 5.19452 5.22459 5.37577 5.49659 5.56887 5.62159 5.65592 5.83312 6.32221 6.76566 7.12798 7.18712 7.80897 8.45225 9.27507 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039818 B = 0.003275 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.034185 B = 8546.989466 C = 8676.002412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.025 4.025 4 C -0.113 4.113 5 C -0.236 4.236 6 C 0.554 3.446 7 O -0.589 6.589 8 N -0.639 5.639 9 C 0.122 3.878 10 C -0.097 4.097 11 C 0.133 3.867 12 C -0.102 4.102 13 C 0.158 3.842 14 N -0.626 5.626 15 C -0.236 4.236 16 H 0.085 0.915 17 C -0.070 4.070 18 N -0.952 5.952 19 Si 0.980 3.020 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.274 1.274 23 C 0.149 3.851 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.148 0.852 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.072 0.928 40 H -0.021 1.021 41 H 0.245 0.755 42 H 0.030 0.970 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -19.895 -10.365 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.027 4.027 4 C -0.170 4.170 5 C -0.256 4.256 6 C 0.349 3.651 7 O -0.473 6.473 8 N -0.373 5.373 9 C -0.001 4.001 10 C -0.098 4.098 11 C 0.011 3.989 12 C -0.140 4.140 13 C 0.033 3.967 14 N -0.353 5.353 15 C -0.365 4.365 16 H 0.103 0.897 17 C -0.262 4.262 18 N -0.602 5.602 19 Si 0.808 3.192 20 H -0.206 1.206 21 H -0.223 1.223 22 H -0.200 1.200 23 C 0.024 3.976 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.166 0.834 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.090 0.910 40 H -0.003 1.003 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.949 -19.522 -10.960 22.473 hybrid contribution 0.105 1.477 0.722 1.648 sum 2.053 -18.045 -10.238 20.848 Atomic orbital electron populations 1.21722 0.93668 1.03000 1.02001 1.20818 0.96751 0.90465 1.04732 1.22864 0.88715 0.96688 0.94424 1.20946 1.02245 0.99235 0.94529 1.22377 1.10325 0.92395 1.00507 1.18860 0.76518 0.88423 0.81330 1.90744 1.55279 1.69308 1.31964 1.50074 1.68065 1.12914 1.06200 1.23002 1.00283 0.84473 0.92351 1.22345 0.96810 0.96808 0.93878 1.23213 1.04088 0.94854 0.76760 1.22461 0.94014 0.97852 0.99686 1.21703 0.92507 0.91849 0.90670 1.44882 1.24811 1.38944 1.26629 1.19455 1.06102 1.10959 0.99939 0.89700 1.25637 0.97446 1.00816 1.02309 1.70058 1.14567 1.34792 1.40753 0.85125 0.76655 0.78058 0.79332 1.20622 1.22325 1.19985 1.21175 0.93095 0.90329 0.93049 0.92799 0.90267 0.93096 0.89013 0.89275 0.91888 0.90545 0.92300 0.83446 0.92263 0.88642 0.86795 0.87733 0.90373 0.91847 0.91049 1.00258 0.94489 0.95237 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.09 -1.07 6.03 29.85 0.18 -0.89 16 3 C -0.02 -0.48 5.36 -17.61 -0.09 -0.57 16 4 C -0.11 -2.48 8.34 71.24 0.59 -1.89 16 5 C -0.24 -5.15 9.41 23.43 0.22 -4.93 16 6 C 0.55 16.72 7.96 86.57 0.69 17.41 16 7 O -0.59 -21.89 13.83 -4.08 -0.06 -21.95 16 8 N -0.64 -18.18 3.62 -863.97 -3.12 -21.30 16 9 C 0.12 3.85 8.08 85.98 0.69 4.54 16 10 C -0.10 -3.07 0.98 -52.08 -0.05 -3.12 16 11 C 0.13 3.02 7.79 85.97 0.67 3.69 16 12 C -0.10 -3.75 6.42 31.65 0.20 -3.54 16 13 C 0.16 7.81 5.90 86.92 0.51 8.33 16 14 N -0.63 -31.50 3.41 -692.83 -2.36 -33.87 16 15 C -0.24 -12.97 10.28 84.03 0.86 -12.10 16 16 H 0.09 4.41 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 18 N -0.95 -57.02 10.09 21.65 0.22 -56.80 16 19 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.15 5.62 6.75 86.22 0.58 6.21 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 0.83 8.13 -2.39 -0.02 0.81 16 28 H 0.09 0.83 7.99 -2.39 -0.02 0.81 16 29 H 0.06 1.61 7.32 -2.39 -0.02 1.59 16 30 H 0.08 1.22 7.99 -2.39 -0.02 1.20 16 31 H 0.06 1.59 7.14 -2.39 -0.02 1.57 16 32 H 0.15 2.42 7.84 -2.91 -0.02 2.39 16 33 H 0.06 2.13 8.12 -2.38 -0.02 2.11 16 34 H 0.10 2.78 8.00 -2.38 -0.02 2.76 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.10 1.97 8.12 -2.39 -0.02 1.95 16 37 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.06 2.28 8.06 -2.39 -0.02 2.26 16 39 H 0.07 4.04 5.89 -2.39 -0.01 4.03 16 40 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 41 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.03 1.11 7.86 -2.39 -0.02 1.09 16 43 H 0.05 1.65 8.09 -2.39 -0.02 1.64 16 Total: -1.00 -70.58 346.02 3.91 -66.67 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.97 Total: 11.16 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.24 Total: 8.67 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -5.27 Total: -111.97 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.58 3.91 -66.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147489802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.573 kcal (2) G-P(sol) polarization free energy of solvation -70.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds