Wall clock time and date at job start Tue Mar 31 2020 00:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46866 * 123.37059 * 3 2 1 5 5 C 1.50702 * 109.47245 * 299.99874 * 4 3 2 6 6 O 1.21283 * 120.00262 * 240.00295 * 5 4 3 7 7 N 1.34777 * 119.99928 * 59.72201 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47555 * 180.02562 * 9 8 7 11 11 C 1.36929 * 120.00268 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00173 * 0.02562 * 11 10 9 13 13 C 1.38811 * 120.00157 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00303 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00121 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99667 * 15 13 11 17 17 H 1.48498 * 109.47278 * 210.00097 * 15 13 11 18 18 H 1.48507 * 109.46754 * 329.99928 * 15 13 11 19 19 C 1.52996 * 109.47253 * 59.99686 * 4 3 2 20 20 C 1.53000 * 109.47253 * 179.97438 * 19 4 3 21 21 C 1.52996 * 109.47166 * 300.00041 * 20 19 4 22 22 C 1.53002 * 109.47255 * 60.00105 * 21 20 19 23 23 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 24 24 H 4.44649 * 5.63264 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47162 * 3.37607 * 3 2 1 26 26 H 1.08994 * 109.47016 * 243.36903 * 3 2 1 27 27 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 28 28 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 29 29 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 30 30 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 31 31 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 32 32 H 0.97000 * 119.99478 * 0.02562 * 10 9 8 33 33 H 0.96999 * 120.00263 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47551 * 299.99874 * 19 4 3 35 35 H 1.09003 * 109.46851 * 60.00175 * 19 4 3 36 36 H 1.09004 * 109.47131 * 180.02562 * 20 19 4 37 37 H 1.09003 * 109.47049 * 60.00296 * 20 19 4 38 38 H 1.09003 * 109.47345 * 300.00074 * 21 20 19 39 39 H 1.09000 * 109.47665 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47738 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.46969 * 59.99739 * 22 21 20 42 42 H 1.08994 * 109.47089 * 300.00072 * 23 4 3 43 43 H 1.09004 * 109.47066 * 59.99996 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7943 -1.2047 5 6 2.6536 0.1573 -2.4748 6 8 3.4419 -0.2556 -3.2989 7 7 1.3286 0.0412 -2.6924 8 6 0.8405 -0.5835 -3.9243 9 6 -0.6895 -0.5888 -3.9221 10 7 -1.1776 -1.2141 -5.1538 11 6 -2.5237 -1.3312 -5.3753 12 1 -3.2258 -0.9622 -4.6422 13 6 -2.9862 -1.9241 -6.5421 14 7 -4.2801 -2.0363 -6.7552 15 14 -1.7720 -2.5630 -7.8098 16 1 -1.4463 -3.9810 -7.5126 17 1 -2.3737 -2.4666 -9.1640 18 1 -0.5308 -1.7492 -7.7605 19 6 2.6449 2.2341 -1.1199 20 6 3.1550 3.0279 -2.3243 21 6 4.6850 3.0287 -2.3237 22 6 5.1958 1.5889 -2.4085 23 6 4.6856 0.7956 -1.2044 24 1 -1.0501 0.0000 0.0004 25 1 3.0098 -1.0250 -0.0605 26 1 3.0091 0.4614 0.9186 27 1 0.6980 0.3714 -2.0334 28 1 1.2003 -0.0196 -4.7849 29 1 1.2076 -1.6082 -3.9822 30 1 -1.0497 -1.1524 -3.0615 31 1 -1.0562 0.4361 -3.8646 32 1 -0.5470 -1.5451 -5.8124 33 1 -4.6033 -2.4503 -7.5708 34 1 1.5549 2.2336 -1.1199 35 1 3.0081 2.6949 -0.2013 36 1 2.7915 4.0538 -2.2637 37 1 2.7922 2.5672 -3.2432 38 1 5.0478 3.4893 -1.4048 39 1 5.0485 3.5938 -3.1819 40 1 6.2858 1.5893 -2.4076 41 1 4.8330 1.1283 -3.3274 42 1 5.0483 1.2566 -0.2858 43 1 5.0498 -0.2300 -1.2646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153009187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:18 Heat of formation + Delta-G solvation = 11.947642 kcal Electronic energy + Delta-G solvation = -22267.338771 eV Core-core repulsion = 19120.645702 eV Total energy + Delta-G solvation = -3146.693069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01561 -37.52952 -35.92528 -35.02888 -33.63695 -31.71604 -31.43708 -30.80044 -28.14924 -27.09087 -24.07153 -22.94332 -22.39042 -21.45603 -20.99994 -19.34742 -18.25294 -17.67889 -16.52044 -16.18108 -15.44664 -15.22710 -14.65788 -14.51437 -14.37569 -14.08807 -13.93925 -13.71145 -13.66238 -13.19233 -12.67760 -12.57332 -12.39976 -12.16990 -12.13387 -11.61009 -11.50638 -11.21405 -10.97260 -10.87132 -10.76319 -10.71491 -10.44292 -10.18096 -10.14202 -10.10391 -9.64002 -9.44231 -8.98479 -8.80108 -7.30611 -5.80659 -3.17797 2.47090 2.64056 2.79252 3.25547 3.38031 3.41898 3.45656 4.05105 4.41522 4.44404 4.54456 4.57204 4.81771 4.96697 5.02847 5.13735 5.24287 5.30754 5.33021 5.36995 5.44486 5.44790 5.48340 5.61579 5.65283 5.67822 5.73439 5.80317 5.85425 5.97382 5.99575 6.04014 6.10783 6.13603 6.36149 6.51860 6.59696 6.70189 7.37158 7.64120 7.92789 8.34242 8.37662 9.15270 9.87738 10.06546 11.37254 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023370 B = 0.004115 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.848427 B = 6803.470391 C = 7363.737740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.194 4.194 3 C -0.003 4.003 4 C -0.071 4.071 5 C 0.523 3.477 6 O -0.538 6.538 7 N -0.722 5.722 8 C 0.105 3.895 9 C 0.150 3.850 10 N -0.752 5.752 11 C -0.248 4.248 12 H 0.091 0.909 13 C 0.008 3.992 14 N -0.932 5.932 15 Si 0.884 3.116 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.135 4.135 23 C -0.091 4.091 24 H 0.222 0.778 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.401 0.599 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.363 0.637 33 H 0.261 0.739 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.914 9.393 16.212 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C -0.039 4.039 4 C -0.075 4.075 5 C 0.309 3.691 6 O -0.416 6.416 7 N -0.377 5.377 8 C -0.019 4.019 9 C 0.022 3.978 10 N -0.398 5.398 11 C -0.378 4.378 12 H 0.109 0.891 13 C -0.188 4.188 14 N -0.580 5.580 15 Si 0.714 3.286 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.144 4.144 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.172 4.172 23 C -0.129 4.129 24 H 0.239 0.761 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.241 0.759 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.196 0.804 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.204 9.110 15.634 25.667 hybrid contribution 0.101 -0.385 -0.677 0.786 sum 18.305 8.725 14.956 25.197 Atomic orbital electron populations 1.25115 0.96140 1.00046 0.99539 1.22876 0.94400 1.01312 1.00826 1.18806 0.85181 1.01733 0.98215 1.20907 0.97784 0.96264 0.92509 1.20299 0.82300 0.78753 0.87788 1.90616 1.55063 1.48973 1.46949 1.46384 1.07270 1.61264 1.22774 1.21584 0.95727 0.98215 0.86387 1.20708 0.89477 0.96914 0.90721 1.42532 1.04942 1.72957 1.19395 1.19006 0.81413 1.33424 1.03945 0.89118 1.24659 0.95596 1.00709 0.97886 1.69697 1.11470 1.49442 1.27348 0.86553 0.80996 0.79196 0.81861 1.20906 1.21568 1.20197 1.21632 1.00753 0.92544 0.99490 1.21582 0.96199 1.00094 0.98328 1.21537 0.95260 0.97259 1.01474 1.21794 0.99929 0.94931 1.00535 1.21342 0.91127 1.01453 0.98949 0.76083 0.88927 0.88313 0.75936 0.91521 0.91484 0.95005 0.95136 0.80403 0.92942 0.91367 0.90644 0.91601 0.91797 0.92284 0.92147 0.92261 0.88837 0.91352 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 17.62 29.55 0.52 -1.36 16 2 C -0.19 -1.96 9.75 -37.12 -0.36 -2.32 16 3 C 0.00 -0.02 4.78 -29.52 -0.14 -0.16 16 4 C -0.07 -0.72 0.50 -155.66 -0.08 -0.80 16 5 C 0.52 7.33 4.93 -10.98 -0.05 7.28 16 6 O -0.54 -9.22 13.66 5.55 0.08 -9.15 16 7 N -0.72 -10.34 4.90 -60.29 -0.30 -10.64 16 8 C 0.10 1.79 5.79 -4.04 -0.02 1.77 16 9 C 0.15 2.89 6.37 -4.04 -0.03 2.87 16 10 N -0.75 -18.17 5.41 -59.91 -0.32 -18.50 16 11 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 12 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 13 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 14 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 15 Si 0.88 22.36 27.74 -169.99 -4.71 17.65 16 16 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 18 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 19 C -0.11 -0.96 4.38 -26.73 -0.12 -1.08 16 20 C -0.12 -1.22 5.70 -26.73 -0.15 -1.37 16 21 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 22 C -0.13 -1.39 5.63 -26.75 -0.15 -1.54 16 23 C -0.09 -0.84 4.37 -26.76 -0.12 -0.96 16 24 H 0.22 1.71 7.80 -54.09 -0.42 1.28 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.40 5.14 4.10 -40.82 -0.17 4.97 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.36 8.65 5.53 -40.82 -0.23 8.43 16 33 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 34 H 0.07 0.64 6.68 -51.93 -0.35 0.30 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.78 7.22 -51.93 -0.37 0.41 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.26 5.51 -51.93 -0.29 0.98 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -33.15 337.15 -7.42 -40.58 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.91 Total: 9.49 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.11 Total: -6.00 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.16 Total: -57.65 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.15 -7.42 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153009187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.526 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds