Wall clock time and date at job start Tue Mar 31 2020 00:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46866 * 123.37059 * 3 2 1 5 5 C 1.50702 * 109.47245 * 299.99874 * 4 3 2 6 6 O 1.21283 * 120.00262 * 240.00295 * 5 4 3 7 7 N 1.34777 * 119.99928 * 59.72201 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47555 * 180.02562 * 9 8 7 11 11 C 1.36929 * 120.00268 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00173 * 0.02562 * 11 10 9 13 13 C 1.38811 * 120.00157 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00303 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00121 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99667 * 15 13 11 17 17 H 1.48498 * 109.47278 * 210.00097 * 15 13 11 18 18 H 1.48507 * 109.46754 * 329.99928 * 15 13 11 19 19 C 1.52996 * 109.47253 * 59.99686 * 4 3 2 20 20 C 1.53000 * 109.47253 * 179.97438 * 19 4 3 21 21 C 1.52996 * 109.47166 * 300.00041 * 20 19 4 22 22 C 1.53002 * 109.47255 * 60.00105 * 21 20 19 23 23 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 24 24 H 4.44649 * 5.63264 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47162 * 3.37607 * 3 2 1 26 26 H 1.08994 * 109.47016 * 243.36903 * 3 2 1 27 27 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 28 28 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 29 29 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 30 30 H 1.08998 * 109.47382 * 300.00439 * 9 8 7 31 31 H 1.09005 * 109.46800 * 60.00640 * 9 8 7 32 32 H 0.97000 * 119.99478 * 0.02562 * 10 9 8 33 33 H 0.96999 * 120.00263 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47551 * 299.99874 * 19 4 3 35 35 H 1.09003 * 109.46851 * 60.00175 * 19 4 3 36 36 H 1.09004 * 109.47131 * 180.02562 * 20 19 4 37 37 H 1.09003 * 109.47049 * 60.00296 * 20 19 4 38 38 H 1.09003 * 109.47345 * 300.00074 * 21 20 19 39 39 H 1.09000 * 109.47665 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47738 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.46969 * 59.99739 * 22 21 20 42 42 H 1.08994 * 109.47089 * 300.00072 * 23 4 3 43 43 H 1.09004 * 109.47066 * 59.99996 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7943 -1.2047 5 6 2.6536 0.1573 -2.4748 6 8 3.4419 -0.2556 -3.2989 7 7 1.3286 0.0412 -2.6924 8 6 0.8405 -0.5835 -3.9243 9 6 -0.6895 -0.5888 -3.9221 10 7 -1.1776 -1.2141 -5.1538 11 6 -2.5237 -1.3312 -5.3753 12 1 -3.2258 -0.9622 -4.6422 13 6 -2.9862 -1.9241 -6.5421 14 7 -4.2801 -2.0363 -6.7552 15 14 -1.7720 -2.5630 -7.8098 16 1 -1.4463 -3.9810 -7.5126 17 1 -2.3737 -2.4666 -9.1640 18 1 -0.5308 -1.7492 -7.7605 19 6 2.6449 2.2341 -1.1199 20 6 3.1550 3.0279 -2.3243 21 6 4.6850 3.0287 -2.3237 22 6 5.1958 1.5889 -2.4085 23 6 4.6856 0.7956 -1.2044 24 1 -1.0501 0.0000 0.0004 25 1 3.0098 -1.0250 -0.0605 26 1 3.0091 0.4614 0.9186 27 1 0.6980 0.3714 -2.0334 28 1 1.2003 -0.0196 -4.7849 29 1 1.2076 -1.6082 -3.9822 30 1 -1.0497 -1.1524 -3.0615 31 1 -1.0562 0.4361 -3.8646 32 1 -0.5470 -1.5451 -5.8124 33 1 -4.6033 -2.4503 -7.5708 34 1 1.5549 2.2336 -1.1199 35 1 3.0081 2.6949 -0.2013 36 1 2.7915 4.0538 -2.2637 37 1 2.7922 2.5672 -3.2432 38 1 5.0478 3.4893 -1.4048 39 1 5.0485 3.5938 -3.1819 40 1 6.2858 1.5893 -2.4076 41 1 4.8330 1.1283 -3.3274 42 1 5.0483 1.2566 -0.2858 43 1 5.0498 -0.2300 -1.2646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153009187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:17 Heat of formation + Delta-G solvation = -9.591856 kcal Electronic energy + Delta-G solvation = -22268.272794 eV Core-core repulsion = 19120.645702 eV Total energy + Delta-G solvation = -3147.627092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.97334 -38.57080 -37.41634 -36.17426 -35.01042 -33.41108 -32.47175 -31.63713 -29.78838 -27.77940 -25.70810 -23.86684 -23.60836 -23.00238 -21.86419 -20.45546 -19.76316 -18.93446 -17.50889 -17.34313 -16.69612 -16.47737 -16.08062 -15.75682 -15.52611 -15.25341 -15.18041 -14.75430 -14.68559 -14.60133 -14.07462 -13.51557 -13.35906 -13.20915 -13.14141 -12.96625 -12.87450 -12.74587 -12.63159 -12.12743 -11.96835 -11.85644 -11.65727 -11.46532 -11.16712 -11.06785 -10.87661 -10.86186 -10.52535 -10.07305 -9.40421 -8.07680 -5.43346 1.36829 1.38343 1.45577 1.55589 1.85913 1.90654 2.11525 2.44251 3.23941 3.33571 3.53016 3.70677 3.75421 3.80749 3.89298 4.05621 4.12531 4.23003 4.31341 4.41407 4.46928 4.52349 4.62350 4.70261 4.76273 4.82111 4.93029 4.93548 5.01898 5.06881 5.11406 5.16458 5.26448 5.27736 5.34405 5.37915 5.44443 5.68128 5.69849 6.15065 6.51582 6.64037 6.99778 7.23638 7.73764 7.92492 9.13082 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023370 B = 0.004115 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.848427 B = 6803.470391 C = 7363.737740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C -0.003 4.003 4 C -0.063 4.063 5 C 0.517 3.483 6 O -0.573 6.573 7 N -0.719 5.719 8 C 0.119 3.881 9 C 0.153 3.847 10 N -0.757 5.757 11 C -0.240 4.240 12 H 0.064 0.936 13 C -0.056 4.056 14 N -0.978 5.978 15 Si 0.951 3.049 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.257 1.257 19 C -0.104 4.104 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.137 4.137 23 C -0.090 4.090 24 H 0.234 0.766 25 H 0.092 0.908 26 H 0.134 0.866 27 H 0.409 0.591 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.366 0.634 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.104 0.896 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.049 10.298 18.049 28.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.206 4.206 3 C -0.039 4.039 4 C -0.066 4.066 5 C 0.305 3.695 6 O -0.453 6.453 7 N -0.375 5.375 8 C -0.006 4.006 9 C 0.026 3.974 10 N -0.404 5.404 11 C -0.370 4.370 12 H 0.082 0.918 13 C -0.248 4.248 14 N -0.628 5.628 15 Si 0.778 3.222 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.182 1.182 19 C -0.142 4.142 20 C -0.164 4.164 21 C -0.151 4.151 22 C -0.174 4.174 23 C -0.127 4.127 24 H 0.251 0.749 25 H 0.110 0.890 26 H 0.152 0.848 27 H 0.250 0.750 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.199 0.801 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.370 10.039 17.519 28.681 hybrid contribution -0.580 -0.618 -1.182 1.455 sum 19.789 9.421 16.337 27.336 Atomic orbital electron populations 1.25618 0.96904 1.00045 0.99542 1.23318 0.95121 1.01372 1.00807 1.18942 0.84304 1.01853 0.98802 1.20936 0.98355 0.96753 0.90567 1.21179 0.81526 0.77977 0.88860 1.90612 1.55765 1.50401 1.48509 1.46365 1.07961 1.61214 1.21937 1.21226 0.93916 0.97914 0.87572 1.20779 0.90959 0.96687 0.88950 1.42542 1.03422 1.73329 1.21064 1.19006 0.82917 1.32021 1.03097 0.91791 1.25444 0.97358 1.01712 1.00288 1.69858 1.13663 1.51121 1.28176 0.85479 0.79211 0.78873 0.78673 1.20270 1.21773 1.18171 1.21674 1.00485 0.91635 1.00357 1.21597 0.96888 1.00660 0.97248 1.21525 0.94543 0.96422 1.02638 1.21756 1.00571 0.95723 0.99383 1.21393 0.90280 1.01134 0.99915 0.74909 0.89016 0.84790 0.74958 0.92516 0.92289 0.94252 0.94568 0.80083 0.93100 0.91918 0.87471 0.90322 0.95208 0.89669 0.92540 0.91231 0.92701 0.87754 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.69 17.62 74.32 1.31 -2.38 16 2 C -0.21 -3.72 9.75 31.13 0.30 -3.42 16 3 C 0.00 -0.04 4.78 28.79 0.14 0.10 16 4 C -0.06 -1.12 0.50 -52.93 -0.03 -1.15 16 5 C 0.52 14.21 4.93 87.66 0.43 14.64 16 6 O -0.57 -19.92 13.66 -3.04 -0.04 -19.96 16 7 N -0.72 -20.22 4.90 -463.06 -2.27 -22.49 16 8 C 0.12 4.03 5.79 86.38 0.50 4.53 16 9 C 0.15 5.84 6.37 86.38 0.55 6.39 16 10 N -0.76 -36.28 5.41 -343.46 -1.86 -38.14 16 11 C -0.24 -13.77 10.47 84.03 0.88 -12.89 16 12 H 0.06 3.95 8.06 -2.91 -0.02 3.92 16 13 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 14 N -0.98 -62.61 13.97 21.65 0.30 -62.31 16 15 Si 0.95 46.21 27.74 68.60 1.90 48.11 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 17 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 18 H -0.26 -11.54 6.52 99.48 0.65 -10.89 16 19 C -0.10 -1.57 4.38 30.59 0.13 -1.44 16 20 C -0.13 -2.26 5.70 30.59 0.17 -2.09 16 21 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 22 C -0.14 -2.63 5.63 30.58 0.17 -2.46 16 23 C -0.09 -1.42 4.37 30.58 0.13 -1.29 16 24 H 0.23 3.30 7.80 -4.41 -0.03 3.27 16 25 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.41 10.09 4.10 -92.71 -0.38 9.71 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.37 17.04 5.53 -92.71 -0.51 16.53 16 33 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 34 H 0.06 1.03 6.68 -2.39 -0.02 1.02 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.03 0.72 7.22 -2.39 -0.02 0.71 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 1.51 5.51 -2.39 -0.01 1.49 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.06 1.10 8.10 -2.38 -0.02 1.08 16 Total: -1.00 -72.88 337.15 3.43 -69.45 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.04 Total: 31.25 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.35 Total: -5.92 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -3.82 Total: -122.94 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.04 Total: -19.96 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Total: -72.88 3.43 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153009187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.857 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds