Wall clock time and date at job start Tue Mar 31 2020 00:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46880 * 2 1 4 4 C 1.47201 * 109.47250 * 119.99431 * 2 1 3 5 5 C 2.64596 * 109.47048 * 119.99742 * 2 1 3 6 6 C 4.07802 * 109.47102 * 119.99678 * 2 1 3 7 7 O 1.21611 * 119.99763 * 126.61836 * 6 5 4 8 8 N 1.34774 * 119.99617 * 306.88777 * 6 5 4 9 9 C 1.46500 * 119.99709 * 179.72615 * 8 6 5 10 10 C 1.53002 * 109.47205 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.47213 * 175.02174 * 10 9 8 12 12 C 1.52994 * 115.55143 * 278.03840 * 11 10 9 13 13 N 1.46500 * 109.46990 * 303.89478 * 12 11 10 14 14 C 1.36938 * 119.99934 * 175.59434 * 13 12 11 15 15 H 1.08001 * 120.00243 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00102 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99784 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00290 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47135 * 89.99717 * 18 16 14 20 20 H 1.48496 * 109.47032 * 210.00114 * 18 16 14 21 21 H 1.48499 * 109.46977 * 329.99895 * 18 16 14 22 22 C 1.53001 * 117.49660 * 132.32119 * 11 10 9 23 23 C 1.53000 * 60.00148 * 252.51677 * 22 11 10 24 24 H 1.09005 * 109.47020 * 299.99610 * 1 2 3 25 25 H 1.08999 * 109.47242 * 60.00015 * 1 2 3 26 26 H 1.09008 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47077 * 240.00268 * 2 1 3 28 28 H 1.09006 * 109.47028 * 59.99815 * 3 2 1 29 29 H 1.08998 * 109.46956 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47171 * 300.00028 * 3 2 1 31 31 H 0.96993 * 120.00881 * 359.73124 * 8 6 5 32 32 H 1.09008 * 109.47334 * 300.00473 * 9 8 6 33 33 H 1.09000 * 109.47607 * 60.00361 * 9 8 6 34 34 H 1.08994 * 109.47321 * 295.02070 * 10 9 8 35 35 H 1.09000 * 109.46939 * 55.03004 * 10 9 8 36 36 H 1.08996 * 109.47468 * 63.89589 * 12 11 10 37 37 H 1.09007 * 109.47285 * 183.89754 * 12 11 10 38 38 H 0.96999 * 120.00164 * 355.59535 * 13 12 11 39 39 H 0.97005 * 120.00089 * 179.97438 * 17 16 14 40 40 H 1.09004 * 117.50034 * 0.02562 * 22 11 10 41 41 H 1.08999 * 117.49281 * 145.02207 * 22 11 10 42 42 H 1.09000 * 117.49760 * 252.50949 * 23 22 11 43 43 H 1.08993 * 117.49485 * 107.49592 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0208 -0.6938 1.2019 5 6 2.4120 -1.2472 2.1605 6 6 2.8894 -1.9222 3.3298 7 8 4.0035 -2.4096 3.3382 8 7 2.1018 -2.0220 4.4189 9 6 2.5879 -2.7177 5.6130 10 6 1.5073 -2.6883 6.6958 11 6 1.9649 -3.5198 7.8959 12 6 1.7480 -5.0294 7.7741 13 7 0.3327 -5.2995 7.5092 14 6 -0.0869 -6.5812 7.2715 15 1 0.6255 -7.3929 7.2798 16 6 -1.4278 -6.8371 7.0200 17 7 -2.2960 -5.8480 7.0105 18 14 -2.0004 -8.5856 6.6965 19 1 -2.3746 -9.2295 7.9812 20 1 -3.1787 -8.5614 5.7932 21 1 -0.9029 -9.3556 6.0580 22 6 1.8204 -2.8945 9.2848 23 6 3.2060 -3.0432 8.6533 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.2132 -1.6333 4.4122 32 1 2.8213 -3.7523 5.3611 33 1 3.4859 -2.2222 5.9820 34 1 1.3365 -1.6590 7.0109 35 1 0.5821 -3.1046 6.2971 36 1 2.3518 -5.4182 6.9542 37 1 2.0427 -5.5151 8.7044 38 1 -0.3071 -4.5706 7.5021 39 1 -3.2331 -6.0267 6.8343 40 1 1.3989 -1.8910 9.3437 41 1 1.5704 -3.5588 10.1121 42 1 3.8677 -3.8052 9.0652 43 1 3.6963 -2.1375 8.2967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164461530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:31 Heat of formation + Delta-G solvation = 31.070573 kcal Electronic energy + Delta-G solvation = -20634.732753 eV Core-core repulsion = 17488.868916 eV Total energy + Delta-G solvation = -3145.863837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.64846 -38.24405 -36.66309 -34.82821 -33.93253 -32.22633 -30.78942 -29.85066 -27.57599 -26.03812 -24.77451 -22.99813 -22.70058 -21.91554 -21.32101 -19.22913 -18.03906 -17.08408 -16.29303 -16.14719 -15.61265 -15.12590 -14.92894 -14.43774 -14.38056 -14.03686 -13.81503 -13.37561 -13.08381 -12.70997 -12.63457 -12.37130 -12.33353 -11.90011 -11.81444 -11.77284 -11.45128 -11.14725 -10.94095 -10.84841 -10.73785 -10.48921 -10.41465 -10.20623 -10.11334 -9.92007 -9.64699 -9.33028 -9.04065 -8.83414 -6.89561 -5.75763 -3.03409 1.51822 2.18811 3.07021 3.44487 3.49898 3.50367 3.51364 4.01076 4.09126 4.58186 4.61897 4.73136 4.79765 5.02264 5.06721 5.14310 5.20956 5.22905 5.32742 5.40888 5.47506 5.53370 5.59366 5.64070 5.68703 5.76609 5.80199 5.84873 5.91303 6.16364 6.17659 6.20389 6.40787 6.43781 6.45550 6.60022 6.77420 6.84148 7.10788 7.44825 7.71686 8.12561 8.43554 9.55184 10.13218 10.48839 11.47169 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.003688 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.888517 B = 7589.840209 C = 9140.652642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.146 4.146 4 C -0.080 4.080 5 C -0.219 4.219 6 C 0.630 3.370 7 O -0.528 6.528 8 N -0.712 5.712 9 C 0.125 3.875 10 C -0.093 4.093 11 C -0.118 4.118 12 C 0.187 3.813 13 N -0.728 5.728 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.166 4.166 23 C -0.178 4.178 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.404 0.596 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.026 0.974 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 15.728 -8.863 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.010 4.010 3 C -0.203 4.203 4 C -0.083 4.083 5 C -0.222 4.222 6 C 0.417 3.583 7 O -0.406 6.406 8 N -0.362 5.362 9 C 0.003 3.997 10 C -0.131 4.131 11 C -0.119 4.119 12 C 0.060 3.940 13 N -0.372 5.372 14 C -0.368 4.368 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.203 4.203 23 C -0.215 4.215 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.239 0.761 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.988 15.172 -8.842 19.292 hybrid contribution -1.052 -0.621 -0.112 1.227 sum 6.937 14.551 -8.954 18.440 Atomic orbital electron populations 1.21863 0.92660 1.03080 1.02865 1.18503 0.96348 0.95169 0.90944 1.21840 1.01736 0.93875 1.02841 1.22602 0.96781 0.94150 0.94764 1.20795 1.02083 1.02288 0.97008 1.14681 0.84423 0.78849 0.80394 1.90851 1.19605 1.47430 1.82668 1.45890 1.18969 1.57413 1.13960 1.21446 0.97199 0.97768 0.83304 1.21276 0.99128 0.99078 0.93570 1.21560 1.01558 0.96743 0.92084 1.20184 0.87983 0.88359 0.97508 1.42307 1.02326 1.06979 1.85590 1.19240 0.92195 0.85474 1.39900 0.91251 1.24710 0.96022 0.97334 1.02921 1.69658 1.02136 1.29872 1.56629 0.86201 0.78072 0.84399 0.77610 1.21785 1.21815 1.20780 1.22996 0.99300 1.01592 0.96410 1.22972 0.91030 1.02778 1.04739 0.91855 0.91211 0.91761 0.88178 0.91952 0.91988 0.91171 0.76096 0.90505 0.91413 0.91876 0.89080 0.95589 0.96413 0.78148 0.93606 0.89306 0.88677 0.88894 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.15 37.16 0.34 -0.63 16 2 C 0.01 0.06 3.30 -93.40 -0.31 -0.24 16 3 C -0.15 -0.89 9.15 37.16 0.34 -0.55 16 4 C -0.08 -0.92 12.56 -37.12 -0.47 -1.39 16 5 C -0.22 -3.04 13.61 -38.83 -0.53 -3.57 16 6 C 0.63 9.97 7.65 -14.33 -0.11 9.86 16 7 O -0.53 -10.16 17.09 5.27 0.09 -10.07 16 8 N -0.71 -9.87 5.55 -62.76 -0.35 -10.22 16 9 C 0.13 1.84 5.49 -4.04 -0.02 1.82 16 10 C -0.09 -1.37 5.20 -26.73 -0.14 -1.51 16 11 C -0.12 -1.89 1.65 -154.51 -0.25 -2.14 16 12 C 0.19 3.79 6.15 -4.04 -0.02 3.76 16 13 N -0.73 -18.19 5.23 -59.91 -0.31 -18.50 16 14 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 18 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.17 -2.39 9.87 -26.73 -0.26 -2.65 16 23 C -0.18 -2.35 9.57 -26.73 -0.26 -2.60 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.40 4.72 8.44 -40.82 -0.34 4.38 16 32 H 0.08 1.30 7.96 -51.92 -0.41 0.89 16 33 H 0.07 0.95 7.72 -51.93 -0.40 0.55 16 34 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 35 H 0.09 1.58 6.94 -51.93 -0.36 1.22 16 36 H 0.03 0.55 7.96 -51.93 -0.41 0.13 16 37 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 38 H 0.38 10.00 6.80 -40.82 -0.28 9.72 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.09 1.15 8.07 -51.93 -0.42 0.73 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -32.84 367.86 -8.49 -41.33 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.22 Total: 8.77 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.94 Total: -7.13 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.06 Total: -55.96 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.84 -8.49 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164461530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.396 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds