Wall clock time and date at job start Tue Mar 31 2020 00:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46880 * 2 1 4 4 C 1.47201 * 109.47250 * 119.99431 * 2 1 3 5 5 C 2.64596 * 109.47048 * 119.99742 * 2 1 3 6 6 C 4.07802 * 109.47102 * 119.99678 * 2 1 3 7 7 O 1.21611 * 119.99763 * 126.61836 * 6 5 4 8 8 N 1.34774 * 119.99617 * 306.88777 * 6 5 4 9 9 C 1.46500 * 119.99709 * 179.72615 * 8 6 5 10 10 C 1.53002 * 109.47205 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.47213 * 175.02174 * 10 9 8 12 12 C 1.52994 * 115.55143 * 278.03840 * 11 10 9 13 13 N 1.46500 * 109.46990 * 303.89478 * 12 11 10 14 14 C 1.36938 * 119.99934 * 175.59434 * 13 12 11 15 15 H 1.08001 * 120.00243 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00102 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99784 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00290 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47135 * 89.99717 * 18 16 14 20 20 H 1.48496 * 109.47032 * 210.00114 * 18 16 14 21 21 H 1.48499 * 109.46977 * 329.99895 * 18 16 14 22 22 C 1.53001 * 117.49660 * 132.32119 * 11 10 9 23 23 C 1.53000 * 60.00148 * 252.51677 * 22 11 10 24 24 H 1.09005 * 109.47020 * 299.99610 * 1 2 3 25 25 H 1.08999 * 109.47242 * 60.00015 * 1 2 3 26 26 H 1.09008 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47077 * 240.00268 * 2 1 3 28 28 H 1.09006 * 109.47028 * 59.99815 * 3 2 1 29 29 H 1.08998 * 109.46956 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47171 * 300.00028 * 3 2 1 31 31 H 0.96993 * 120.00881 * 359.73124 * 8 6 5 32 32 H 1.09008 * 109.47334 * 300.00473 * 9 8 6 33 33 H 1.09000 * 109.47607 * 60.00361 * 9 8 6 34 34 H 1.08994 * 109.47321 * 295.02070 * 10 9 8 35 35 H 1.09000 * 109.46939 * 55.03004 * 10 9 8 36 36 H 1.08996 * 109.47468 * 63.89589 * 12 11 10 37 37 H 1.09007 * 109.47285 * 183.89754 * 12 11 10 38 38 H 0.96999 * 120.00164 * 355.59535 * 13 12 11 39 39 H 0.97005 * 120.00089 * 179.97438 * 17 16 14 40 40 H 1.09004 * 117.50034 * 0.02562 * 22 11 10 41 41 H 1.08999 * 117.49281 * 145.02207 * 22 11 10 42 42 H 1.09000 * 117.49760 * 252.50949 * 23 22 11 43 43 H 1.08993 * 117.49485 * 107.49592 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0208 -0.6938 1.2019 5 6 2.4120 -1.2472 2.1605 6 6 2.8894 -1.9222 3.3298 7 8 4.0035 -2.4096 3.3382 8 7 2.1018 -2.0220 4.4189 9 6 2.5879 -2.7177 5.6130 10 6 1.5073 -2.6883 6.6958 11 6 1.9649 -3.5198 7.8959 12 6 1.7480 -5.0294 7.7741 13 7 0.3327 -5.2995 7.5092 14 6 -0.0869 -6.5812 7.2715 15 1 0.6255 -7.3929 7.2798 16 6 -1.4278 -6.8371 7.0200 17 7 -2.2960 -5.8480 7.0105 18 14 -2.0004 -8.5856 6.6965 19 1 -2.3746 -9.2295 7.9812 20 1 -3.1787 -8.5614 5.7932 21 1 -0.9029 -9.3556 6.0580 22 6 1.8204 -2.8945 9.2848 23 6 3.2060 -3.0432 8.6533 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.2132 -1.6333 4.4122 32 1 2.8213 -3.7523 5.3611 33 1 3.4859 -2.2222 5.9820 34 1 1.3365 -1.6590 7.0109 35 1 0.5821 -3.1046 6.2971 36 1 2.3518 -5.4182 6.9542 37 1 2.0427 -5.5151 8.7044 38 1 -0.3071 -4.5706 7.5021 39 1 -3.2331 -6.0267 6.8343 40 1 1.3989 -1.8910 9.3437 41 1 1.5704 -3.5588 10.1121 42 1 3.8677 -3.8052 9.0652 43 1 3.6963 -2.1375 8.2967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164461530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:31 Heat of formation + Delta-G solvation = 10.533086 kcal Electronic energy + Delta-G solvation = -20635.623325 eV Core-core repulsion = 17488.868916 eV Total energy + Delta-G solvation = -3146.754409 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89122 -39.53891 -37.35322 -36.18286 -35.78766 -33.16413 -32.79534 -31.04252 -28.06125 -27.85240 -25.91624 -24.62372 -23.99710 -22.99487 -22.37169 -20.45688 -19.46821 -18.92534 -17.44805 -17.00228 -16.91528 -16.64024 -16.18381 -15.71864 -15.59554 -15.29782 -15.04073 -14.80052 -14.40979 -14.22720 -13.92830 -13.19207 -13.10622 -13.04828 -12.98409 -12.80233 -12.61126 -12.44741 -12.34535 -12.27711 -12.13262 -11.97448 -11.90801 -11.58685 -11.37194 -11.21813 -11.09688 -10.92176 -10.55619 -10.25824 -8.97337 -7.95210 -5.22513 0.43091 1.19728 1.46083 1.47181 1.55652 1.99293 2.39996 2.54088 2.88773 3.12318 3.38079 3.81846 3.82797 3.95050 4.03040 4.06801 4.09846 4.16199 4.25629 4.37887 4.45413 4.46878 4.62738 4.79066 4.84908 4.92014 4.93463 4.93991 4.96405 5.08094 5.10552 5.14295 5.24596 5.30209 5.31813 5.34397 5.34803 5.37164 5.48853 6.14649 6.27475 6.30552 6.94914 7.34682 8.10717 8.36655 9.28009 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.003688 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.888517 B = 7589.840209 C = 9140.652642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.003 3.997 3 C -0.143 4.143 4 C -0.041 4.041 5 C -0.276 4.276 6 C 0.630 3.370 7 O -0.572 6.572 8 N -0.702 5.702 9 C 0.133 3.867 10 C -0.079 4.079 11 C -0.141 4.141 12 C 0.187 3.813 13 N -0.736 5.736 14 C -0.246 4.246 15 H 0.069 0.931 16 C -0.071 4.071 17 N -0.965 5.965 18 Si 0.969 3.031 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.274 1.274 22 C -0.162 4.162 23 C -0.151 4.151 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.119 0.881 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.415 0.585 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.377 0.623 39 H 0.251 0.749 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.334 17.219 -9.587 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 C -0.200 4.200 4 C -0.044 4.044 5 C -0.279 4.279 6 C 0.418 3.582 7 O -0.454 6.454 8 N -0.352 5.352 9 C 0.010 3.990 10 C -0.116 4.116 11 C -0.142 4.142 12 C 0.061 3.939 13 N -0.379 5.379 14 C -0.378 4.378 15 H 0.087 0.913 16 C -0.264 4.264 17 N -0.615 5.615 18 Si 0.799 3.201 19 H -0.214 1.214 20 H -0.220 1.220 21 H -0.199 1.199 22 C -0.199 4.199 23 C -0.188 4.188 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.252 0.748 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.210 0.790 39 H 0.060 0.940 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.145 16.672 -9.547 20.867 hybrid contribution -1.080 -1.048 0.075 1.507 sum 7.065 15.623 -9.472 19.589 Atomic orbital electron populations 1.21880 0.91634 1.02794 1.04013 1.18895 0.97102 0.95932 0.89579 1.21853 1.01477 0.92691 1.03999 1.23530 0.94504 0.92032 0.94318 1.20627 1.04670 1.04579 0.97978 1.14920 0.83907 0.78267 0.81113 1.90808 1.21440 1.49573 1.83560 1.45819 1.19252 1.56689 1.13441 1.21324 0.97793 0.96375 0.83520 1.21120 0.97416 1.00148 0.92956 1.21386 1.05075 0.94082 0.93677 1.20239 0.85238 0.91885 0.96577 1.42448 1.04151 1.05827 1.85439 1.19598 0.92468 0.86784 1.38967 0.91263 1.25479 0.96234 1.01074 1.03585 1.69798 1.02108 1.31667 1.57974 0.85201 0.77465 0.80105 0.77367 1.21353 1.21959 1.19909 1.23060 1.00286 1.02053 0.94531 1.23067 0.90209 1.03380 1.02163 0.92170 0.88681 0.92775 0.86314 0.92250 0.92442 0.88623 0.74826 0.93416 0.90109 0.89000 0.92150 0.96624 0.96684 0.78993 0.93987 0.87318 0.89828 0.88410 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.15 71.98 0.66 -0.93 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.14 -1.37 9.15 71.98 0.66 -0.71 16 4 C -0.04 -0.91 12.56 31.13 0.39 -0.52 16 5 C -0.28 -7.73 13.61 30.02 0.41 -7.32 16 6 C 0.63 20.53 7.65 85.49 0.65 21.19 16 7 O -0.57 -22.88 17.09 -4.07 -0.07 -22.95 16 8 N -0.70 -19.74 5.55 -470.73 -2.61 -22.35 16 9 C 0.13 3.91 5.49 86.38 0.47 4.38 16 10 C -0.08 -2.28 5.20 30.60 0.16 -2.12 16 11 C -0.14 -4.40 1.65 -52.18 -0.09 -4.49 16 12 C 0.19 7.70 6.15 86.38 0.53 8.23 16 13 N -0.74 -37.61 5.23 -343.46 -1.80 -39.41 16 14 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 15 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 16 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 17 N -0.96 -58.69 13.06 21.65 0.28 -58.41 16 18 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 C -0.16 -4.36 9.87 30.59 0.30 -4.06 16 23 C -0.15 -3.63 9.57 30.60 0.29 -3.33 16 24 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.42 9.73 8.44 -92.71 -0.78 8.95 16 32 H 0.05 1.68 7.96 -2.38 -0.02 1.66 16 33 H 0.08 2.18 7.72 -2.39 -0.02 2.16 16 34 H 0.09 2.13 7.93 -2.39 -0.02 2.12 16 35 H 0.06 2.14 6.94 -2.39 -0.02 2.13 16 36 H 0.02 0.68 7.96 -2.39 -0.02 0.66 16 37 H 0.02 0.64 8.10 -2.38 -0.02 0.62 16 38 H 0.38 20.15 6.80 -92.71 -0.63 19.52 16 39 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 40 H 0.11 2.50 8.07 -2.38 -0.02 2.48 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.11 2.25 7.90 -2.39 -0.02 2.24 16 Total: -1.00 -72.40 367.86 3.13 -69.27 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.41 Total: 31.58 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.71 Total: -6.52 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -4.12 Total: -120.16 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.07 Total: -22.95 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -72.40 3.13 -69.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164461530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.803 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds