Wall clock time and date at job start Mon Mar 30 2020 23:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35447 * 126.77549 * 2 1 4 4 C 1.41378 * 103.98381 * 180.09746 * 3 2 1 5 5 C 1.50705 * 126.80362 * 179.88742 * 4 3 2 6 6 H 1.09001 * 109.90695 * 325.07182 * 5 4 3 7 7 C 1.53993 * 109.91193 * 86.17159 * 5 4 3 8 8 C 1.54596 * 105.14099 * 120.58191 * 7 5 4 9 9 C 1.54940 * 102.92153 * 21.95351 * 8 7 5 10 10 N 1.47902 * 109.91767 * 203.76032 * 5 4 3 11 11 C 1.46891 * 110.99974 * 94.80678 * 10 5 4 12 12 H 1.09003 * 109.47615 * 55.80486 * 11 10 5 13 13 C 1.53000 * 109.47193 * 295.80323 * 11 10 5 14 14 C 1.53000 * 109.47036 * 175.80811 * 11 10 5 15 15 C 1.52999 * 109.47201 * 185.62343 * 14 11 10 16 16 C 1.50702 * 109.47358 * 174.82428 * 15 14 11 17 17 H 1.07997 * 120.00206 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00158 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00219 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00100 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46989 * 90.00290 * 20 18 16 22 22 H 1.48494 * 109.47326 * 210.00608 * 20 18 16 23 23 H 1.48509 * 109.47060 * 330.00225 * 20 18 16 24 24 N 1.30181 * 106.39693 * 359.63457 * 4 3 2 25 25 O 1.20923 * 111.59989 * 0.23338 * 24 4 3 26 26 H 1.09005 * 109.47086 * 180.29778 * 1 2 3 27 27 H 1.08999 * 109.46858 * 300.29301 * 1 2 3 28 28 H 1.08998 * 109.47183 * 60.29246 * 1 2 3 29 29 H 1.07999 * 128.00920 * 359.97175 * 3 2 1 30 30 H 1.09003 * 110.30605 * 239.49269 * 7 5 4 31 31 H 1.08999 * 110.31098 * 1.65756 * 7 5 4 32 32 H 1.08997 * 110.72759 * 140.30915 * 8 7 5 33 33 H 1.09003 * 110.72026 * 263.59862 * 8 7 5 34 34 H 1.08995 * 110.66833 * 81.02116 * 9 8 7 35 35 H 1.09003 * 110.66368 * 203.99081 * 9 8 7 36 36 H 1.08999 * 109.47535 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.47275 * 300.00101 * 13 11 10 38 38 H 1.09004 * 109.46732 * 60.00146 * 13 11 10 39 39 H 1.09001 * 109.47233 * 305.61834 * 14 11 10 40 40 H 1.09000 * 109.47469 * 65.62280 * 14 11 10 41 41 H 1.09001 * 109.47386 * 294.82750 * 15 14 11 42 42 H 1.09012 * 109.47036 * 54.82559 * 15 14 11 43 43 H 0.97000 * 120.00224 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.3000 -0.0057 6 1 4.8147 2.2120 -0.5930 7 6 5.3276 1.6499 1.4378 8 6 6.7070 0.9824 1.6420 9 6 7.2256 0.8082 0.1924 10 7 5.9986 0.4569 -0.5676 11 6 6.1759 0.7163 -2.0025 12 1 6.3639 1.7785 -2.1593 13 6 4.9086 0.3061 -2.7553 14 6 7.3639 -0.0944 -2.5244 15 6 7.6362 0.2807 -3.9825 16 6 8.8819 -0.4217 -4.4577 17 1 9.4254 -1.0704 -3.7867 18 6 9.3285 -0.2353 -5.7487 19 7 10.4154 -0.8487 -6.1636 20 14 8.3890 0.8873 -6.9091 21 1 8.9141 2.2714 -6.7921 22 1 8.5585 0.4099 -8.3050 23 1 6.9474 0.8729 -6.5527 24 7 3.4764 -0.7565 0.0045 25 8 2.3095 -1.0736 0.0059 26 1 -0.3633 -1.0277 0.0053 27 1 -0.3633 0.5184 0.8874 28 1 -0.3633 0.5093 -0.8926 29 1 2.0345 2.1270 -0.0004 30 1 5.4090 2.7304 1.5565 31 1 4.6028 1.2446 2.1438 32 1 7.3695 1.6327 2.2130 33 1 6.5984 0.0146 2.1317 34 1 7.6537 1.7397 -0.1776 35 1 7.9575 0.0022 0.1400 36 1 5.0402 0.4981 -3.8201 37 1 4.7206 -0.7561 -2.5986 38 1 4.0622 0.8837 -2.3835 39 1 8.2457 0.1245 -1.9222 40 1 7.1345 -1.1580 -2.4596 41 1 6.7904 -0.0223 -4.5997 42 1 7.7750 1.3591 -4.0604 43 1 10.7294 -0.7178 -7.0720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:57 Heat of formation + Delta-G solvation = 52.876087 kcal Electronic energy + Delta-G solvation = -22232.299394 eV Core-core repulsion = 19087.381115 eV Total energy + Delta-G solvation = -3144.918279 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.84822 -39.38518 -35.26894 -34.11447 -33.21861 -32.67693 -30.47958 -29.07285 -28.13396 -27.84914 -25.30825 -23.49179 -22.63635 -21.35850 -21.01918 -19.39302 -19.17866 -17.58220 -17.14065 -16.79635 -15.83108 -15.68597 -14.44149 -14.24009 -14.17220 -14.07161 -13.64133 -13.50923 -13.11673 -12.90442 -12.88684 -12.60902 -12.50170 -12.09872 -11.88611 -11.67725 -11.25657 -11.21159 -11.07418 -10.92120 -10.74992 -10.67024 -10.51554 -9.94749 -9.92316 -9.61860 -9.46382 -9.26934 -9.09443 -8.49923 -8.23439 -6.00608 -3.97819 1.50998 2.30491 3.13713 3.31919 3.39323 3.43381 3.89243 4.19202 4.48031 4.57532 4.63028 4.78381 4.88498 4.97185 5.11474 5.13088 5.22955 5.32991 5.35814 5.43286 5.48679 5.50560 5.59306 5.68325 5.74742 5.78391 5.84070 5.89829 6.04454 6.11439 6.15892 6.20054 6.32240 6.52108 6.59392 6.65587 6.92482 7.11575 7.31714 7.40700 7.51161 7.84606 8.45256 8.59201 9.05296 9.62220 11.13092 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.004336 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.761021 B = 6456.687014 C = 7297.765269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.044 4.044 3 C -0.238 4.238 4 C 0.039 3.961 5 C 0.140 3.860 6 H 0.071 0.929 7 C -0.119 4.119 8 C -0.122 4.122 9 C 0.038 3.962 10 N -0.500 5.500 11 C 0.073 3.927 12 H 0.037 0.963 13 C -0.139 4.139 14 C -0.092 4.092 15 C -0.012 4.012 16 C -0.517 4.517 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 N -0.327 5.327 25 O 0.095 5.905 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.017 0.983 42 H 0.007 0.993 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.241 6.975 16.171 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C -0.260 4.260 4 C -0.121 4.121 5 C 0.031 3.969 6 H 0.088 0.912 7 C -0.158 4.158 8 C -0.160 4.160 9 C -0.090 4.090 10 N -0.224 5.224 11 C -0.035 4.035 12 H 0.055 0.945 13 C -0.196 4.196 14 C -0.130 4.130 15 C -0.049 4.049 16 C -0.555 4.555 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.544 5.544 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.191 1.191 24 N -0.029 5.029 25 O 0.027 5.973 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.183 0.817 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.025 0.975 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.382 5.352 16.048 24.981 hybrid contribution -0.545 2.292 -0.966 2.546 sum -18.926 7.644 15.082 25.379 Atomic orbital electron populations 1.20285 0.84501 1.04459 1.03730 1.24433 0.96270 0.86592 1.03423 1.22305 0.91564 1.00750 1.11351 1.23269 0.95904 0.90102 1.02803 1.20617 0.87425 0.92757 0.96140 0.91164 1.22405 0.97927 1.00561 0.94883 1.22494 0.95409 1.01078 0.97029 1.23202 0.93119 1.00471 0.92164 1.64632 1.03319 1.50923 1.03517 1.22014 0.97452 0.97963 0.86030 0.94483 1.21856 0.95800 1.01903 1.00053 1.21517 0.94298 0.99266 0.97948 1.19599 0.97294 0.95972 0.92080 1.21156 1.08486 1.27969 0.97877 0.91050 1.25028 0.94780 0.95650 0.98070 1.69917 1.23086 1.43583 1.17838 0.86791 0.81164 0.81178 0.80232 1.20388 1.21392 1.19056 1.73990 0.95227 1.16211 1.17461 1.84919 1.11778 1.33203 1.67375 0.90046 0.89528 0.89464 0.81713 0.90961 0.91152 0.90965 0.90759 0.93437 0.89249 0.91761 0.91994 0.94236 0.92612 0.92057 0.96436 0.97464 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.45 36.01 0.38 -0.02 16 2 C -0.04 -0.44 7.49 -35.30 -0.26 -0.71 16 3 C -0.24 -2.55 11.06 -39.38 -0.44 -2.99 16 4 C 0.04 0.54 4.07 -82.10 -0.33 0.20 16 5 C 0.14 1.87 2.46 -67.79 -0.17 1.70 16 6 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 7 C -0.12 -1.30 6.56 -25.37 -0.17 -1.46 16 8 C -0.12 -1.38 7.06 -24.87 -0.18 -1.56 16 9 C 0.04 0.53 5.34 -1.89 -0.01 0.52 16 10 N -0.50 -7.90 4.63 -216.03 -1.00 -8.90 16 11 C 0.07 1.30 1.83 -67.72 -0.12 1.17 16 12 H 0.04 0.65 7.98 -51.93 -0.41 0.24 16 13 C -0.14 -2.41 8.41 37.16 0.31 -2.10 16 14 C -0.09 -1.95 4.57 -26.73 -0.12 -2.07 16 15 C -0.01 -0.29 3.68 -27.88 -0.10 -0.39 16 16 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -28.56 13.96 55.43 0.77 -27.78 16 20 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 24 N -0.33 -5.09 11.90 33.42 0.40 -4.70 16 25 O 0.10 1.29 11.20 17.19 0.19 1.48 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.66 8.01 -51.93 -0.42 0.24 16 35 H 0.09 1.33 7.53 -51.93 -0.39 0.94 16 36 H 0.06 1.16 6.70 -51.93 -0.35 0.81 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.04 0.62 6.28 -51.93 -0.33 0.29 16 39 H 0.06 1.17 6.61 -51.93 -0.34 0.82 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.02 0.43 5.90 -51.93 -0.31 0.13 16 42 H 0.01 0.17 7.57 -51.92 -0.39 -0.22 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -33.29 339.41 -7.96 -41.25 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.13 Total: -2.68 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.64 Total: -21.36 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.17 Total: -41.38 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.19 Total: 1.48 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.29 -7.96 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.129 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds