Wall clock time and date at job start Mon Mar 30 2020 23:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35447 * 126.77549 * 2 1 4 4 C 1.41378 * 103.98381 * 180.09746 * 3 2 1 5 5 C 1.50705 * 126.80362 * 179.88742 * 4 3 2 6 6 H 1.09001 * 109.90695 * 325.07182 * 5 4 3 7 7 C 1.53993 * 109.91193 * 86.17159 * 5 4 3 8 8 C 1.54596 * 105.14099 * 120.58191 * 7 5 4 9 9 C 1.54940 * 102.92153 * 21.95351 * 8 7 5 10 10 N 1.47902 * 109.91767 * 203.76032 * 5 4 3 11 11 C 1.46891 * 110.99974 * 94.80678 * 10 5 4 12 12 H 1.09003 * 109.47615 * 55.80486 * 11 10 5 13 13 C 1.53000 * 109.47193 * 295.80323 * 11 10 5 14 14 C 1.53000 * 109.47036 * 175.80811 * 11 10 5 15 15 C 1.52999 * 109.47201 * 185.62343 * 14 11 10 16 16 C 1.50702 * 109.47358 * 174.82428 * 15 14 11 17 17 H 1.07997 * 120.00206 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00158 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00219 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00100 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46989 * 90.00290 * 20 18 16 22 22 H 1.48494 * 109.47326 * 210.00608 * 20 18 16 23 23 H 1.48509 * 109.47060 * 330.00225 * 20 18 16 24 24 N 1.30181 * 106.39693 * 359.63457 * 4 3 2 25 25 O 1.20923 * 111.59989 * 0.23338 * 24 4 3 26 26 H 1.09005 * 109.47086 * 180.29778 * 1 2 3 27 27 H 1.08999 * 109.46858 * 300.29301 * 1 2 3 28 28 H 1.08998 * 109.47183 * 60.29246 * 1 2 3 29 29 H 1.07999 * 128.00920 * 359.97175 * 3 2 1 30 30 H 1.09003 * 110.30605 * 239.49269 * 7 5 4 31 31 H 1.08999 * 110.31098 * 1.65756 * 7 5 4 32 32 H 1.08997 * 110.72759 * 140.30915 * 8 7 5 33 33 H 1.09003 * 110.72026 * 263.59862 * 8 7 5 34 34 H 1.08995 * 110.66833 * 81.02116 * 9 8 7 35 35 H 1.09003 * 110.66368 * 203.99081 * 9 8 7 36 36 H 1.08999 * 109.47535 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.47275 * 300.00101 * 13 11 10 38 38 H 1.09004 * 109.46732 * 60.00146 * 13 11 10 39 39 H 1.09001 * 109.47233 * 305.61834 * 14 11 10 40 40 H 1.09000 * 109.47469 * 65.62280 * 14 11 10 41 41 H 1.09001 * 109.47386 * 294.82750 * 15 14 11 42 42 H 1.09012 * 109.47036 * 54.82559 * 15 14 11 43 43 H 0.97000 * 120.00224 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0023 5 6 4.9211 1.3000 -0.0057 6 1 4.8147 2.2120 -0.5930 7 6 5.3276 1.6499 1.4378 8 6 6.7070 0.9824 1.6420 9 6 7.2256 0.8082 0.1924 10 7 5.9986 0.4569 -0.5676 11 6 6.1759 0.7163 -2.0025 12 1 6.3639 1.7785 -2.1593 13 6 4.9086 0.3061 -2.7553 14 6 7.3639 -0.0944 -2.5244 15 6 7.6362 0.2807 -3.9825 16 6 8.8819 -0.4217 -4.4577 17 1 9.4254 -1.0704 -3.7867 18 6 9.3285 -0.2353 -5.7487 19 7 10.4154 -0.8487 -6.1636 20 14 8.3890 0.8873 -6.9091 21 1 8.9141 2.2714 -6.7921 22 1 8.5585 0.4099 -8.3050 23 1 6.9474 0.8729 -6.5527 24 7 3.4764 -0.7565 0.0045 25 8 2.3095 -1.0736 0.0059 26 1 -0.3633 -1.0277 0.0053 27 1 -0.3633 0.5184 0.8874 28 1 -0.3633 0.5093 -0.8926 29 1 2.0345 2.1270 -0.0004 30 1 5.4090 2.7304 1.5565 31 1 4.6028 1.2446 2.1438 32 1 7.3695 1.6327 2.2130 33 1 6.5984 0.0146 2.1317 34 1 7.6537 1.7397 -0.1776 35 1 7.9575 0.0022 0.1400 36 1 5.0402 0.4981 -3.8201 37 1 4.7206 -0.7561 -2.5986 38 1 4.0622 0.8837 -2.3835 39 1 8.2457 0.1245 -1.9222 40 1 7.1345 -1.1580 -2.4596 41 1 6.7904 -0.0223 -4.5997 42 1 7.7750 1.3591 -4.0604 43 1 10.7294 -0.7178 -7.0720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:56 Heat of formation + Delta-G solvation = 31.390330 kcal Electronic energy + Delta-G solvation = -22233.231086 eV Core-core repulsion = 19087.381115 eV Total energy + Delta-G solvation = -3145.849971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.77423 -40.53588 -36.80557 -35.04673 -34.68788 -34.00722 -32.20848 -30.14371 -29.49950 -28.48821 -27.14830 -24.55737 -23.73252 -22.99358 -22.01878 -20.96018 -20.17025 -18.99862 -18.50611 -18.00744 -17.11042 -16.73530 -16.19640 -15.93669 -15.22774 -15.03323 -14.83419 -14.44937 -14.32304 -14.20397 -13.97169 -13.90177 -13.47855 -13.39562 -13.11185 -12.95405 -12.94318 -12.51581 -12.36508 -12.19735 -12.07885 -11.88416 -11.83209 -11.59628 -11.53095 -11.43566 -11.19034 -10.78342 -10.73526 -10.10981 -9.42183 -8.31714 -6.36159 0.70521 1.32413 1.35388 1.40554 1.47482 2.33987 2.41588 2.78810 3.03132 3.27436 3.64795 3.76811 3.80941 3.93840 4.05604 4.12626 4.24304 4.28190 4.37349 4.47833 4.55239 4.63165 4.65137 4.73721 4.78541 4.79873 4.82404 4.88322 4.89824 4.97187 4.98592 5.02775 5.07869 5.13776 5.23209 5.24976 5.33696 5.44943 5.56322 5.63037 5.95906 6.08583 6.27583 6.71423 7.28129 7.57375 8.85537 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.004336 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.761021 B = 6456.687014 C = 7297.765269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.037 4.037 3 C -0.242 4.242 4 C 0.028 3.972 5 C 0.136 3.864 6 H 0.081 0.919 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.032 3.968 10 N -0.518 5.518 11 C 0.084 3.916 12 H 0.047 0.953 13 C -0.128 4.128 14 C -0.082 4.082 15 C -0.004 4.004 16 C -0.534 4.534 17 H 0.027 0.973 18 C 0.003 3.997 19 N -0.952 5.952 20 Si 0.953 3.047 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.247 1.247 24 N -0.373 5.373 25 O 0.076 5.924 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.194 0.806 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.041 0.959 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.076 9.854 16.652 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C -0.264 4.264 4 C -0.132 4.132 5 C 0.027 3.973 6 H 0.099 0.901 7 C -0.149 4.149 8 C -0.152 4.152 9 C -0.095 4.095 10 N -0.242 5.242 11 C -0.024 4.024 12 H 0.064 0.936 13 C -0.186 4.186 14 C -0.120 4.120 15 C -0.042 4.042 16 C -0.572 4.572 17 H 0.045 0.955 18 C -0.193 4.193 19 N -0.593 5.593 20 Si 0.775 3.225 21 H -0.187 1.187 22 H -0.208 1.208 23 H -0.171 1.171 24 N -0.079 5.079 25 O 0.010 5.990 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.212 0.788 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.242 8.224 16.556 28.160 hybrid contribution 0.362 1.303 -1.047 1.710 sum -20.880 9.527 15.509 27.699 Atomic orbital electron populations 1.20528 0.81203 1.05528 1.05553 1.25283 0.97974 0.85574 1.01255 1.22647 0.90148 1.02228 1.11385 1.23554 0.97088 0.89937 1.02610 1.20778 0.86440 0.92519 0.97554 0.90105 1.22401 0.97149 1.02134 0.93216 1.22457 0.96287 1.01300 0.95149 1.23235 0.92434 0.99813 0.94007 1.64542 1.04804 1.52469 1.02410 1.21762 0.95660 0.97410 0.87601 0.93560 1.21739 0.96339 1.00886 0.99603 1.21318 0.95992 0.98548 0.96153 1.19497 0.94856 0.95850 0.93985 1.21485 1.10092 1.27877 0.97752 0.95499 1.26054 0.95763 0.97445 1.00068 1.70076 1.25077 1.45466 1.18678 0.85623 0.80373 0.79077 0.77386 1.18732 1.20781 1.17099 1.73995 0.96471 1.17619 1.19772 1.84860 1.11693 1.34570 1.67855 0.89445 0.87233 0.87793 0.78838 0.88224 0.91035 0.88431 0.91838 0.93006 0.91291 0.92383 0.93993 0.92366 0.93217 0.94324 0.96182 0.96269 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.45 71.24 0.74 0.18 16 2 C -0.04 -0.68 7.49 25.04 0.19 -0.49 16 3 C -0.24 -4.54 11.06 22.40 0.25 -4.30 16 4 C 0.03 0.71 4.07 43.58 0.18 0.89 16 5 C 0.14 3.36 2.46 44.31 0.11 3.47 16 6 H 0.08 1.82 7.66 -2.39 -0.02 1.80 16 7 C -0.11 -2.11 6.56 31.47 0.21 -1.90 16 8 C -0.11 -2.40 7.06 31.80 0.22 -2.18 16 9 C 0.03 0.90 5.34 86.65 0.46 1.36 16 10 N -0.52 -16.14 4.63 -837.39 -3.88 -20.02 16 11 C 0.08 2.92 1.83 44.92 0.08 3.00 16 12 H 0.05 1.53 7.98 -2.39 -0.02 1.51 16 13 C -0.13 -4.35 8.41 71.98 0.61 -3.75 16 14 C -0.08 -3.55 4.57 30.59 0.14 -3.41 16 15 C 0.00 -0.20 3.68 29.85 0.11 -0.09 16 16 C -0.53 -32.43 9.66 25.60 0.25 -32.18 16 17 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 18 C 0.00 0.19 5.47 84.65 0.46 0.66 16 19 N -0.95 -61.66 13.96 21.45 0.30 -61.36 16 20 Si 0.95 45.45 27.47 68.60 1.88 47.33 16 21 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 24 N -0.37 -11.59 11.90 -49.55 -0.59 -12.18 16 25 O 0.08 2.01 11.20 71.67 0.80 2.81 16 26 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.19 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.37 7.68 -2.39 -0.02 1.36 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.38 8.01 -2.39 -0.02 1.36 16 35 H 0.07 2.15 7.53 -2.39 -0.02 2.13 16 36 H 0.06 2.01 6.70 -2.39 -0.02 1.99 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.73 6.28 -2.39 -0.01 1.72 16 39 H 0.05 2.17 6.61 -2.39 -0.02 2.15 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.02 0.98 5.90 -2.39 -0.01 0.96 16 42 H 0.02 0.90 7.57 -2.38 -0.02 0.88 16 43 H 0.27 16.02 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -75.11 339.41 3.44 -71.67 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.92 Total: 10.48 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 4.01 Total: -38.73 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -4.17 Total: -93.56 kcal Atomic # 8 Polarization: 2.01 SS G_CDS: 0.80 Total: 2.81 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -75.11 3.44 -71.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.058 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds