Wall clock time and date at job start Mon Mar 30 2020 23:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35457 * 126.77456 * 2 1 4 4 C 1.41388 * 103.98217 * 180.10020 * 3 2 1 5 5 C 1.50693 * 126.80066 * 179.89059 * 4 3 2 6 6 H 1.09006 * 110.72765 * 37.05698 * 5 4 3 7 7 C 1.54945 * 110.66892 * 273.96171 * 5 4 3 8 8 C 1.54588 * 102.92046 * 204.15005 * 7 5 4 9 9 C 1.53987 * 105.14209 * 21.95691 * 8 7 5 10 10 N 1.47901 * 107.06290 * 1.22278 * 9 8 7 11 11 C 1.46893 * 111.00376 * 214.15853 * 10 9 8 12 12 H 1.09000 * 109.47172 * 179.33945 * 11 10 9 13 13 C 1.52995 * 109.47092 * 299.34116 * 11 10 9 14 14 C 1.52998 * 109.47371 * 59.34420 * 11 10 9 15 15 C 1.53000 * 109.47363 * 174.53944 * 14 11 10 16 16 C 1.50702 * 109.47049 * 178.75965 * 15 14 11 17 17 H 1.07996 * 120.00356 * 4.77705 * 16 15 14 18 18 C 1.37878 * 119.99749 * 184.78030 * 16 15 14 19 19 N 1.31519 * 120.00081 * 354.12424 * 18 16 15 20 20 Si 1.86795 * 119.99980 * 174.12755 * 18 16 15 21 21 H 1.48505 * 109.47583 * 89.99756 * 20 18 16 22 22 H 1.48507 * 109.47339 * 329.99983 * 20 18 16 23 23 H 1.48502 * 109.47349 * 209.99889 * 20 18 16 24 24 N 1.30175 * 106.39283 * 359.62460 * 4 3 2 25 25 O 1.20912 * 111.60982 * 0.24704 * 24 4 3 26 26 H 1.09000 * 109.47152 * 180.29762 * 1 2 3 27 27 H 1.08996 * 109.46689 * 300.29623 * 1 2 3 28 28 H 1.08996 * 109.47049 * 60.30110 * 1 2 3 29 29 H 1.07995 * 128.00786 * 359.96420 * 3 2 1 30 30 H 1.09003 * 110.72213 * 85.79054 * 7 5 4 31 31 H 1.08997 * 110.86925 * 322.58307 * 7 5 4 32 32 H 1.09001 * 110.30711 * 263.03752 * 8 7 5 33 33 H 1.09003 * 110.39225 * 140.91376 * 8 7 5 34 34 H 1.09000 * 109.91825 * 241.86765 * 9 8 7 35 35 H 1.08997 * 110.08333 * 120.66945 * 9 8 7 36 36 H 1.09008 * 109.47270 * 179.97438 * 13 11 10 37 37 H 1.08996 * 109.47528 * 300.00127 * 13 11 10 38 38 H 1.09004 * 109.47138 * 60.00637 * 13 11 10 39 39 H 1.09004 * 109.47139 * 54.53701 * 14 11 10 40 40 H 1.08998 * 109.47147 * 294.54297 * 14 11 10 41 41 H 1.09004 * 109.47077 * 58.76127 * 15 14 11 42 42 H 1.08997 * 109.47286 * 298.75916 * 15 14 11 43 43 H 0.96999 * 119.99640 * 5.18775 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9211 1.3000 -0.0057 6 1 4.8433 2.1974 0.6082 7 6 5.3390 1.6622 -1.4531 8 6 6.8708 1.8350 -1.3376 9 6 7.2708 1.0455 -0.0776 10 7 6.0359 0.4383 0.4644 11 6 6.0762 0.3835 1.9317 12 1 5.1512 -0.0565 2.3044 13 6 7.2638 -0.4718 2.3777 14 6 6.2288 1.7994 2.4910 15 6 6.1343 1.7578 4.0175 16 6 6.3151 3.1481 4.5701 17 1 6.4036 3.9890 3.8982 18 6 6.3675 3.3466 5.9335 19 7 6.1447 2.3426 6.7533 20 14 6.7549 5.0416 6.6163 21 1 5.4920 5.7999 6.8048 22 1 7.6322 5.7699 5.6650 23 1 7.4483 4.9026 7.9221 24 7 3.4764 -0.7563 0.0046 25 8 2.3096 -1.0736 0.0060 26 1 -0.3633 -1.0276 0.0053 27 1 -0.3632 0.5184 0.8873 28 1 -0.3633 0.5091 -0.8926 29 1 2.0345 2.1271 -0.0005 30 1 4.8684 2.5933 -1.7689 31 1 5.0927 0.8542 -2.1421 32 1 7.1248 2.8886 -1.2205 33 1 7.3669 1.4223 -2.2161 34 1 7.7078 1.7191 0.6596 35 1 7.9858 0.2646 -0.3365 36 1 7.2940 -0.5121 3.4666 37 1 7.1550 -1.4805 1.9793 38 1 8.1888 -0.0317 2.0051 39 1 5.4359 2.4339 2.0950 40 1 7.1978 2.2033 2.1978 41 1 6.9136 1.1058 4.4122 42 1 5.1570 1.3745 4.3107 43 1 6.0181 1.4477 6.4009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:00 Heat of formation + Delta-G solvation = 49.330623 kcal Electronic energy + Delta-G solvation = -22390.177080 eV Core-core repulsion = 19245.105058 eV Total energy + Delta-G solvation = -3145.072022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.77068 -39.53707 -35.20790 -34.03644 -33.18204 -32.91193 -29.89167 -28.98279 -27.94901 -27.71872 -24.74799 -23.43624 -22.76801 -21.99978 -21.10339 -19.86859 -18.32830 -17.47255 -17.13534 -16.92531 -15.82213 -15.48142 -14.58611 -14.21313 -13.90808 -13.76230 -13.59371 -13.53951 -13.40179 -12.96869 -12.66302 -12.50617 -12.22262 -12.06615 -11.72769 -11.42290 -11.34821 -11.14371 -10.97134 -10.95102 -10.83463 -10.60371 -10.41126 -10.13709 -9.86499 -9.73662 -9.57985 -9.19783 -8.70874 -8.27383 -7.92505 -6.34785 -4.03879 1.58686 2.37149 3.21214 3.41763 3.46093 3.61631 3.99193 4.27238 4.53981 4.66681 4.70319 4.85236 5.01864 5.06900 5.22126 5.23714 5.29347 5.41053 5.44601 5.49122 5.51923 5.62428 5.66818 5.76145 5.80780 5.86104 5.90507 5.98426 6.06055 6.13039 6.18772 6.24403 6.29437 6.47647 6.58782 6.69653 6.94008 7.13790 7.35852 7.43404 7.55764 8.23035 8.47272 8.49709 8.89972 9.68156 11.05150 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.004902 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.468548 B = 5711.094283 C = 6546.317313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.043 4.043 3 C -0.231 4.231 4 C 0.039 3.961 5 C 0.130 3.870 6 H 0.088 0.912 7 C -0.108 4.108 8 C -0.128 4.128 9 C 0.028 3.972 10 N -0.499 5.499 11 C 0.071 3.929 12 H 0.074 0.926 13 C -0.137 4.137 14 C -0.135 4.135 15 C 0.013 3.987 16 C -0.601 4.601 17 H 0.046 0.954 18 C 0.015 3.985 19 N -0.913 5.913 20 Si 1.069 2.931 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.284 1.284 24 N -0.336 5.336 25 O 0.094 5.906 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.168 0.832 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.014 0.986 42 H 0.002 0.998 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.017 -2.757 -17.503 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.253 4.253 4 C -0.121 4.121 5 C 0.020 3.980 6 H 0.106 0.894 7 C -0.147 4.147 8 C -0.167 4.167 9 C -0.099 4.099 10 N -0.222 5.222 11 C -0.037 4.037 12 H 0.092 0.908 13 C -0.195 4.195 14 C -0.173 4.173 15 C -0.024 4.024 16 C -0.639 4.639 17 H 0.064 0.936 18 C -0.189 4.189 19 N -0.550 5.550 20 Si 0.898 3.102 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.209 1.209 24 N -0.038 5.038 25 O 0.026 5.974 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.185 0.815 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.020 0.980 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.060 -3.494 -16.264 17.705 hybrid contribution -0.404 0.811 -1.013 1.359 sum -6.465 -2.683 -17.277 18.641 Atomic orbital electron populations 1.20289 0.84363 1.04401 1.03874 1.24437 0.96288 0.86452 1.03500 1.22345 0.91439 1.00959 1.10559 1.23201 0.96096 0.89965 1.02810 1.21169 0.86409 0.93625 0.96757 0.89448 1.22440 0.95731 1.01474 0.95098 1.22383 0.95489 1.00395 0.98384 1.22910 0.93476 0.97712 0.95851 1.64921 1.01232 1.46022 1.10061 1.21902 0.99476 0.96662 0.85651 0.90810 1.21794 0.96989 0.99071 1.01646 1.22185 1.00341 0.94878 0.99944 1.19185 0.95879 0.97613 0.89722 1.22074 1.54566 0.93144 0.94158 0.93574 1.25830 0.94042 1.05261 0.93773 1.70741 1.44985 1.01254 1.38018 0.83546 0.76662 0.74265 0.75729 1.21512 1.21525 1.20944 1.73931 0.95548 1.16276 1.18067 1.84876 1.11711 1.33261 1.67513 0.90095 0.89301 0.89484 0.81458 0.90867 0.90939 0.91297 0.91091 0.92182 0.90575 0.91531 0.92848 0.93044 0.93200 0.92664 0.96821 0.98025 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.01 0.38 -0.13 16 2 C -0.04 -0.51 7.49 -35.30 -0.26 -0.78 16 3 C -0.23 -3.01 11.06 -39.38 -0.44 -3.44 16 4 C 0.04 0.61 6.10 -82.10 -0.50 0.11 16 5 C 0.13 1.99 2.65 -66.94 -0.18 1.81 16 6 H 0.09 1.44 5.52 -51.93 -0.29 1.15 16 7 C -0.11 -1.35 6.48 -24.87 -0.16 -1.51 16 8 C -0.13 -1.52 6.93 -25.38 -0.18 -1.70 16 9 C 0.03 0.41 5.18 -2.76 -0.01 0.39 16 10 N -0.50 -8.26 4.87 -216.09 -1.05 -9.32 16 11 C 0.07 1.34 2.43 -67.72 -0.16 1.18 16 12 H 0.07 1.54 7.99 -51.93 -0.42 1.13 16 13 C -0.14 -2.44 8.87 37.16 0.33 -2.11 16 14 C -0.13 -2.87 3.99 -26.73 -0.11 -2.97 16 15 C 0.01 0.35 4.09 -27.88 -0.11 0.24 16 16 C -0.60 -17.44 9.10 -34.44 -0.31 -17.75 16 17 H 0.05 1.32 7.75 -52.49 -0.41 0.91 16 18 C 0.01 0.43 5.45 -17.82 -0.10 0.33 16 19 N -0.91 -28.50 13.65 55.43 0.76 -27.74 16 20 Si 1.07 25.69 29.91 -169.99 -5.08 20.61 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 N -0.34 -5.69 11.89 33.42 0.40 -5.29 16 25 O 0.09 1.39 11.20 17.17 0.19 1.58 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.94 5.36 -51.93 -0.28 0.66 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.27 6.55 -51.92 -0.34 0.93 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.86 7.10 -51.93 -0.37 0.49 16 39 H 0.05 1.06 5.77 -51.93 -0.30 0.76 16 40 H 0.05 1.17 6.19 -51.93 -0.32 0.85 16 41 H 0.01 0.37 6.34 -51.93 -0.33 0.04 16 42 H 0.00 0.04 8.07 -51.93 -0.42 -0.38 16 43 H 0.27 8.39 7.25 -40.82 -0.30 8.09 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -33.11 338.22 -8.29 -41.40 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.78 Total: -0.02 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -1.82 Total: -26.33 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.10 Total: -42.34 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.58 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.11 -8.29 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.735 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds