Wall clock time and date at job start Mon Mar 30 2020 23:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35457 * 126.77456 * 2 1 4 4 C 1.41388 * 103.98217 * 180.10020 * 3 2 1 5 5 C 1.50693 * 126.80066 * 179.89059 * 4 3 2 6 6 H 1.09006 * 110.72765 * 37.05698 * 5 4 3 7 7 C 1.54945 * 110.66892 * 273.96171 * 5 4 3 8 8 C 1.54588 * 102.92046 * 204.15005 * 7 5 4 9 9 C 1.53987 * 105.14209 * 21.95691 * 8 7 5 10 10 N 1.47901 * 107.06290 * 1.22278 * 9 8 7 11 11 C 1.46893 * 111.00376 * 214.15853 * 10 9 8 12 12 H 1.09000 * 109.47172 * 179.33945 * 11 10 9 13 13 C 1.52995 * 109.47092 * 299.34116 * 11 10 9 14 14 C 1.52998 * 109.47371 * 59.34420 * 11 10 9 15 15 C 1.53000 * 109.47363 * 174.53944 * 14 11 10 16 16 C 1.50702 * 109.47049 * 178.75965 * 15 14 11 17 17 H 1.07996 * 120.00356 * 4.77705 * 16 15 14 18 18 C 1.37878 * 119.99749 * 184.78030 * 16 15 14 19 19 N 1.31519 * 120.00081 * 354.12424 * 18 16 15 20 20 Si 1.86795 * 119.99980 * 174.12755 * 18 16 15 21 21 H 1.48505 * 109.47583 * 89.99756 * 20 18 16 22 22 H 1.48507 * 109.47339 * 329.99983 * 20 18 16 23 23 H 1.48502 * 109.47349 * 209.99889 * 20 18 16 24 24 N 1.30175 * 106.39283 * 359.62460 * 4 3 2 25 25 O 1.20912 * 111.60982 * 0.24704 * 24 4 3 26 26 H 1.09000 * 109.47152 * 180.29762 * 1 2 3 27 27 H 1.08996 * 109.46689 * 300.29623 * 1 2 3 28 28 H 1.08996 * 109.47049 * 60.30110 * 1 2 3 29 29 H 1.07995 * 128.00786 * 359.96420 * 3 2 1 30 30 H 1.09003 * 110.72213 * 85.79054 * 7 5 4 31 31 H 1.08997 * 110.86925 * 322.58307 * 7 5 4 32 32 H 1.09001 * 110.30711 * 263.03752 * 8 7 5 33 33 H 1.09003 * 110.39225 * 140.91376 * 8 7 5 34 34 H 1.09000 * 109.91825 * 241.86765 * 9 8 7 35 35 H 1.08997 * 110.08333 * 120.66945 * 9 8 7 36 36 H 1.09008 * 109.47270 * 179.97438 * 13 11 10 37 37 H 1.08996 * 109.47528 * 300.00127 * 13 11 10 38 38 H 1.09004 * 109.47138 * 60.00637 * 13 11 10 39 39 H 1.09004 * 109.47139 * 54.53701 * 14 11 10 40 40 H 1.08998 * 109.47147 * 294.54297 * 14 11 10 41 41 H 1.09004 * 109.47077 * 58.76127 * 15 14 11 42 42 H 1.08997 * 109.47286 * 298.75916 * 15 14 11 43 43 H 0.96999 * 119.99640 * 5.18775 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5373 -0.0024 5 6 4.9211 1.3000 -0.0057 6 1 4.8433 2.1974 0.6082 7 6 5.3390 1.6622 -1.4531 8 6 6.8708 1.8350 -1.3376 9 6 7.2708 1.0455 -0.0776 10 7 6.0359 0.4383 0.4644 11 6 6.0762 0.3835 1.9317 12 1 5.1512 -0.0565 2.3044 13 6 7.2638 -0.4718 2.3777 14 6 6.2288 1.7994 2.4910 15 6 6.1343 1.7578 4.0175 16 6 6.3151 3.1481 4.5701 17 1 6.4036 3.9890 3.8982 18 6 6.3675 3.3466 5.9335 19 7 6.1447 2.3426 6.7533 20 14 6.7549 5.0416 6.6163 21 1 5.4920 5.7999 6.8048 22 1 7.6322 5.7699 5.6650 23 1 7.4483 4.9026 7.9221 24 7 3.4764 -0.7563 0.0046 25 8 2.3096 -1.0736 0.0060 26 1 -0.3633 -1.0276 0.0053 27 1 -0.3632 0.5184 0.8873 28 1 -0.3633 0.5091 -0.8926 29 1 2.0345 2.1271 -0.0005 30 1 4.8684 2.5933 -1.7689 31 1 5.0927 0.8542 -2.1421 32 1 7.1248 2.8886 -1.2205 33 1 7.3669 1.4223 -2.2161 34 1 7.7078 1.7191 0.6596 35 1 7.9858 0.2646 -0.3365 36 1 7.2940 -0.5121 3.4666 37 1 7.1550 -1.4805 1.9793 38 1 8.1888 -0.0317 2.0051 39 1 5.4359 2.4339 2.0950 40 1 7.1978 2.2033 2.1978 41 1 6.9136 1.1058 4.4122 42 1 5.1570 1.3745 4.3107 43 1 6.0181 1.4477 6.4009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:59 Heat of formation + Delta-G solvation = 28.767637 kcal Electronic energy + Delta-G solvation = -22391.068758 eV Core-core repulsion = 19245.105058 eV Total energy + Delta-G solvation = -3145.963700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.87145 -40.83549 -36.85155 -35.28418 -34.74028 -34.09014 -31.62813 -30.17609 -29.33917 -28.55285 -26.76138 -24.69472 -24.06743 -23.67827 -22.36744 -21.06443 -19.66343 -19.05871 -18.57676 -18.18330 -17.19815 -16.67890 -16.16892 -15.68524 -15.38034 -15.33436 -14.93578 -14.43912 -14.28547 -14.21801 -14.08935 -13.94459 -13.45288 -13.31904 -13.17959 -12.86707 -12.77802 -12.60585 -12.42949 -12.24694 -12.16547 -12.04951 -11.96736 -11.69601 -11.65291 -11.31828 -10.87112 -10.83990 -10.52290 -10.20158 -9.36349 -8.71309 -6.43258 0.59537 1.27889 1.48775 1.58641 1.76391 2.30966 2.53214 2.77634 3.11680 3.17186 3.57863 3.69683 3.77616 3.89535 3.98428 4.03725 4.15752 4.25146 4.28148 4.40493 4.48925 4.53834 4.54560 4.64568 4.70306 4.73833 4.77198 4.86138 4.88341 4.92118 4.99761 5.02518 5.03754 5.08760 5.11613 5.23978 5.26354 5.34964 5.43800 5.88105 5.93876 6.00112 6.14076 6.53140 7.39206 7.43491 8.67333 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.004902 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.468548 B = 5711.094283 C = 6546.317313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.032 4.032 3 C -0.248 4.248 4 C 0.022 3.978 5 C 0.124 3.876 6 H 0.074 0.926 7 C -0.099 4.099 8 C -0.121 4.121 9 C 0.023 3.977 10 N -0.503 5.503 11 C 0.085 3.915 12 H 0.045 0.955 13 C -0.131 4.131 14 C -0.117 4.117 15 C 0.017 3.983 16 C -0.618 4.618 17 H 0.049 0.951 18 C -0.039 4.039 19 N -0.937 5.937 20 Si 1.120 2.880 21 H -0.272 1.272 22 H -0.267 1.267 23 H -0.281 1.281 24 N -0.374 5.374 25 O 0.081 5.919 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.190 0.810 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.060 0.940 41 H -0.001 1.001 42 H -0.027 1.027 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 -1.130 -19.254 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 C -0.269 4.269 4 C -0.137 4.137 5 C 0.015 3.985 6 H 0.092 0.908 7 C -0.138 4.138 8 C -0.159 4.159 9 C -0.104 4.104 10 N -0.226 5.226 11 C -0.024 4.024 12 H 0.064 0.936 13 C -0.189 4.189 14 C -0.156 4.156 15 C -0.020 4.020 16 C -0.655 4.655 17 H 0.068 0.932 18 C -0.236 4.236 19 N -0.575 5.575 20 Si 0.941 3.059 21 H -0.197 1.197 22 H -0.192 1.192 23 H -0.207 1.207 24 N -0.079 5.079 25 O 0.015 5.985 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.207 0.793 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.017 0.983 42 H -0.009 1.009 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.449 -1.885 -18.051 19.261 hybrid contribution -0.367 0.256 -0.489 0.663 sum -6.816 -1.629 -18.540 19.821 Atomic orbital electron populations 1.20556 0.80763 1.05839 1.05600 1.25297 0.98076 0.85264 1.00920 1.22679 0.90512 1.02381 1.11360 1.23497 0.97238 0.90084 1.02927 1.21269 0.86116 0.92731 0.98414 0.90829 1.22429 0.96220 1.02370 0.92802 1.22389 0.95042 1.00801 0.97664 1.23024 0.92613 0.98039 0.96737 1.64923 1.02795 1.47100 1.07820 1.21594 0.98452 0.94824 0.87513 0.93648 1.21719 0.97157 0.99690 1.00301 1.21976 1.00512 0.96790 0.96313 1.19092 0.93619 0.96139 0.93154 1.22483 1.54123 0.94231 0.94692 0.93239 1.27493 0.92958 1.08496 0.94657 1.70887 1.47001 1.01156 1.38414 0.82918 0.77559 0.69908 0.75562 1.19713 1.19174 1.20693 1.73906 0.96776 1.17149 1.20035 1.84816 1.11556 1.34367 1.67719 0.88863 0.88105 0.86902 0.79312 0.88593 0.91271 0.90082 0.89004 0.93448 0.89724 0.93579 0.91726 0.91739 0.93274 0.92156 0.98320 1.00882 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.45 71.24 0.74 -0.08 16 2 C -0.03 -0.73 7.49 25.04 0.19 -0.54 16 3 C -0.25 -6.24 11.06 22.40 0.25 -5.99 16 4 C 0.02 0.68 6.10 43.58 0.27 0.95 16 5 C 0.12 3.75 2.65 44.52 0.12 3.87 16 6 H 0.07 2.42 5.52 -2.38 -0.01 2.40 16 7 C -0.10 -2.27 6.48 31.80 0.21 -2.06 16 8 C -0.12 -2.56 6.93 31.47 0.22 -2.34 16 9 C 0.02 0.64 5.18 86.44 0.45 1.09 16 10 N -0.50 -16.61 4.87 -837.57 -4.08 -20.69 16 11 C 0.09 3.30 2.43 44.91 0.11 3.41 16 12 H 0.05 2.01 7.99 -2.39 -0.02 1.99 16 13 C -0.13 -4.76 8.87 71.98 0.64 -4.12 16 14 C -0.12 -5.10 3.99 30.59 0.12 -4.97 16 15 C 0.02 0.95 4.09 29.85 0.12 1.08 16 16 C -0.62 -36.28 9.10 25.60 0.23 -36.04 16 17 H 0.05 2.82 7.75 -2.91 -0.02 2.79 16 18 C -0.04 -2.31 5.45 84.65 0.46 -1.85 16 19 N -0.94 -59.76 13.65 21.45 0.29 -59.47 16 20 Si 1.12 50.96 29.91 68.60 2.05 53.01 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 N -0.37 -12.89 11.89 -49.56 -0.59 -13.48 16 25 O 0.08 2.42 11.20 71.62 0.80 3.22 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.43 5.36 -2.39 -0.01 1.41 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 1.83 6.55 -2.38 -0.02 1.82 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 2.14 7.10 -2.39 -0.02 2.12 16 39 H 0.05 2.13 5.77 -2.38 -0.01 2.11 16 40 H 0.06 2.55 6.19 -2.39 -0.01 2.54 16 41 H 0.00 -0.08 6.34 -2.39 -0.02 -0.10 16 42 H -0.03 -1.61 8.07 -2.39 -0.02 -1.63 16 43 H 0.25 16.50 7.25 -92.71 -0.67 15.83 16 Total: -1.00 -73.57 338.22 3.69 -69.88 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 1.09 Total: 15.14 kcal Atomic # 6 Polarization: -51.74 SS G_CDS: 4.12 Total: -47.62 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -4.38 Total: -93.64 kcal Atomic # 8 Polarization: 2.42 SS G_CDS: 0.80 Total: 3.22 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -73.57 3.69 -69.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.652 kcal (2) G-P(sol) polarization free energy of solvation -73.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds