Wall clock time and date at job start Tue Mar 31 2020 00:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47550 * 2 1 4 4 C 1.34329 * 126.17024 * 124.98119 * 3 2 1 5 5 O 1.34756 * 107.11409 * 179.80987 * 4 3 2 6 6 C 1.33965 * 107.75535 * 0.36548 * 5 4 3 7 7 C 1.50698 * 125.61814 * 179.89665 * 6 5 4 8 8 N 1.46900 * 109.47212 * 269.68695 * 7 6 5 9 9 C 1.46901 * 110.99890 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46769 * 204.99887 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 13 13 C 1.50706 * 109.46953 * 60.00071 * 12 11 10 14 14 H 1.07998 * 119.99823 * 240.00260 * 13 12 11 15 15 C 1.37879 * 119.99661 * 60.00040 * 13 12 11 16 16 N 1.31510 * 120.00409 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99651 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47389 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47057 * 120.00069 * 17 15 13 20 20 H 1.48495 * 109.47216 * 239.99942 * 17 15 13 21 21 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 12 11 23 23 N 1.30255 * 108.76066 * 359.62921 * 6 5 4 24 24 H 1.08992 * 109.47379 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46489 * 300.00553 * 1 2 3 26 26 H 1.08998 * 109.46693 * 59.99673 * 1 2 3 27 27 H 1.09003 * 109.47208 * 239.99405 * 2 1 3 28 28 H 1.09007 * 109.47192 * 119.99965 * 2 1 3 29 29 H 1.07997 * 126.44053 * 0.06101 * 4 3 2 30 30 H 1.09005 * 109.46887 * 149.69014 * 7 6 5 31 31 H 1.09002 * 109.47143 * 29.69092 * 7 6 5 32 32 H 1.00902 * 110.99732 * 56.04320 * 8 7 6 33 33 H 1.08992 * 109.47407 * 325.00184 * 9 8 7 34 34 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 36 36 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 38 38 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 39 39 H 0.96998 * 120.00365 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46935 * 299.99411 * 21 12 11 41 41 H 1.09001 * 109.46812 * 179.97438 * 21 12 11 42 42 H 1.08993 * 109.47194 * 179.97438 * 22 21 12 43 43 H 1.09002 * 109.46695 * 59.99734 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8829 1.9609 0.8885 5 8 3.0730 3.2446 0.5256 6 6 2.3347 3.4735 -0.5686 7 6 2.2470 4.7825 -1.3102 8 7 1.1483 5.5858 -0.7574 9 6 1.0322 6.8717 -1.4580 10 6 0.3696 7.8970 -0.5356 11 6 0.2481 9.2361 -1.2655 12 6 -0.6041 9.0560 -2.5233 13 6 -1.9765 8.5692 -2.1349 14 1 -2.3397 7.6233 -2.5085 15 6 -2.7682 9.3317 -1.3025 16 7 -2.3261 10.4838 -0.8479 17 14 -4.4690 8.7280 -0.8204 18 1 -4.7270 7.4127 -1.4596 19 1 -4.5430 8.5835 0.6557 20 1 -5.4888 9.7076 -1.2736 21 6 0.0585 8.0306 -3.4457 22 6 0.1800 6.6915 -2.7159 23 7 1.7095 2.3767 -0.8891 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.3330 1.4593 1.7324 30 1 2.0603 4.5897 -2.3666 31 1 3.1855 5.3259 -1.2003 32 1 1.2651 5.7237 0.2353 33 1 2.0249 7.2236 -1.7386 34 1 -0.6232 7.5451 -0.2550 35 1 0.9765 8.0251 0.3607 36 1 -0.2236 9.9667 -0.6083 37 1 1.2407 9.5882 -1.5465 38 1 -0.6903 10.0099 -3.0436 39 1 -2.8830 11.0200 -0.2620 40 1 1.0511 8.3827 -3.7267 41 1 -0.5489 7.9020 -4.3416 42 1 0.6516 5.9610 -3.3731 43 1 -0.8126 6.3395 -2.4349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173323784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:02 Heat of formation + Delta-G solvation = -1.670782 kcal Electronic energy + Delta-G solvation = -21799.399580 eV Core-core repulsion = 18652.115972 eV Total energy + Delta-G solvation = -3147.283609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.35826 -38.24894 -35.67480 -35.20569 -32.96837 -32.02733 -30.22627 -29.50339 -28.14135 -25.67083 -24.35215 -23.98987 -21.77546 -21.17252 -20.82017 -20.48485 -18.64167 -17.18384 -16.70104 -15.76218 -15.57746 -15.12180 -14.71248 -14.54241 -14.49367 -13.96060 -13.81907 -13.38603 -12.98714 -12.82131 -12.55338 -12.41269 -11.68708 -11.56815 -11.41111 -11.33510 -11.18568 -10.98172 -10.87458 -10.85112 -10.50837 -10.45144 -10.34598 -10.04181 -9.57097 -9.22160 -8.91474 -8.78752 -8.59730 -8.26392 -8.12169 -5.91251 -3.94635 1.38448 2.60000 2.70491 3.34509 3.43117 3.48249 3.88592 4.49801 4.52061 4.57037 4.75062 5.03711 5.15207 5.29604 5.34227 5.39813 5.44763 5.61709 5.64566 5.72038 5.75523 5.86611 5.94676 6.02885 6.13188 6.26567 6.28134 6.47350 6.50357 6.56858 6.67792 6.76934 6.88219 7.10593 7.22949 7.33448 7.52045 7.55922 7.64004 7.76680 7.81226 7.98038 8.20304 8.55230 9.08254 9.68740 11.14816 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.003993 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.024711 B = 7010.707576 C = 7734.376835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.013 4.013 4 C -0.085 4.085 5 O -0.205 6.205 6 C 0.205 3.795 7 C 0.156 3.844 8 N -0.678 5.678 9 C 0.097 3.903 10 C -0.101 4.101 11 C -0.105 4.105 12 C 0.043 3.957 13 C -0.496 4.496 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.883 3.117 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.286 1.286 21 C -0.108 4.108 22 C -0.093 4.093 23 N -0.462 5.462 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.211 0.789 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.340 0.660 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.093 0.907 37 H 0.013 0.987 38 H 0.024 0.976 39 H 0.257 0.743 40 H 0.031 0.969 41 H 0.048 0.952 42 H 0.035 0.965 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.264 -15.768 3.044 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.133 4.133 4 C -0.156 4.156 5 O -0.092 6.092 6 C -0.003 4.003 7 C 0.027 3.973 8 N -0.311 5.311 9 C -0.011 4.011 10 C -0.139 4.139 11 C -0.143 4.143 12 C 0.024 3.976 13 C -0.535 4.535 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.712 3.288 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.146 4.146 22 C -0.131 4.131 23 N -0.192 5.192 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.228 0.772 30 H 0.131 0.869 31 H 0.073 0.927 32 H 0.159 0.841 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.111 0.889 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.355 -15.950 2.268 19.151 hybrid contribution 0.320 0.127 1.469 1.508 sum 10.675 -15.822 3.737 19.449 Atomic orbital electron populations 1.21680 0.94114 1.01516 1.03055 1.19863 0.96835 0.88402 1.02634 1.21855 0.99609 0.97847 0.93989 1.24711 1.04956 0.82336 1.03560 1.84443 1.56184 1.29065 1.39487 1.26334 0.90433 0.97620 0.85936 1.20336 0.94581 0.84474 0.97957 1.60541 1.43163 1.19348 1.08071 1.21634 0.97448 0.86285 0.95697 1.21556 1.00880 0.95928 0.95537 1.21491 0.96349 0.95876 1.00628 1.18702 0.93711 0.93728 0.91425 1.21214 0.99314 1.04944 1.27995 0.92489 1.24927 0.97767 0.94931 0.96384 1.69873 1.36683 1.12321 1.34462 0.86667 0.85073 0.78880 0.78210 1.19774 1.21230 1.21279 1.21577 0.98182 0.96155 0.98677 1.21406 1.00725 0.96802 0.94176 1.70345 1.22545 0.99072 1.27202 0.92403 0.92750 0.91534 0.90388 0.90558 0.77237 0.86893 0.92665 0.84132 0.94878 0.90060 0.95135 0.88899 0.96859 0.95808 0.93309 0.95046 0.93362 0.94677 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.07 16 2 C -0.04 -0.36 6.50 -27.89 -0.18 -0.54 16 3 C -0.01 -0.16 6.37 -82.81 -0.53 -0.69 16 4 C -0.09 -0.93 12.06 29.35 0.35 -0.57 16 5 O -0.21 -2.72 10.78 5.36 0.06 -2.66 16 6 C 0.20 2.93 7.85 -12.95 -0.10 2.83 16 7 C 0.16 2.12 6.11 -4.98 -0.03 2.09 16 8 N -0.68 -10.75 6.30 -107.99 -0.68 -11.43 16 9 C 0.10 1.71 2.50 -67.71 -0.17 1.54 16 10 C -0.10 -2.05 4.97 -26.73 -0.13 -2.18 16 11 C -0.10 -2.39 5.23 -26.73 -0.14 -2.53 16 12 C 0.04 1.03 2.59 -91.77 -0.24 0.80 16 13 C -0.50 -13.16 6.61 -34.44 -0.23 -13.39 16 14 H 0.06 1.53 6.71 -52.49 -0.35 1.18 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 17 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 22 C -0.09 -1.77 5.20 -26.73 -0.14 -1.91 16 23 N -0.46 -7.01 11.28 -7.36 -0.08 -7.09 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 29 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.11 1.52 7.44 -51.93 -0.39 1.14 16 31 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 32 H 0.34 5.18 8.34 -39.29 -0.33 4.85 16 33 H 0.03 0.55 7.80 -51.93 -0.41 0.15 16 34 H 0.08 1.87 7.22 -51.93 -0.37 1.50 16 35 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.03 0.60 7.45 -51.93 -0.39 0.21 16 43 H 0.08 1.70 6.62 -51.93 -0.34 1.36 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -29.44 340.56 -8.46 -37.90 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.09 Total: 2.76 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.40 Total: -16.44 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.14 Total: -43.06 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: 0.06 Total: -2.66 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.44 -8.46 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173323784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.232 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds