Wall clock time and date at job start Tue Mar 31 2020 00:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47550 * 2 1 4 4 C 1.34329 * 126.17024 * 124.98119 * 3 2 1 5 5 O 1.34756 * 107.11409 * 179.80987 * 4 3 2 6 6 C 1.33965 * 107.75535 * 0.36548 * 5 4 3 7 7 C 1.50698 * 125.61814 * 179.89665 * 6 5 4 8 8 N 1.46900 * 109.47212 * 269.68695 * 7 6 5 9 9 C 1.46901 * 110.99890 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46769 * 204.99887 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 13 13 C 1.50706 * 109.46953 * 60.00071 * 12 11 10 14 14 H 1.07998 * 119.99823 * 240.00260 * 13 12 11 15 15 C 1.37879 * 119.99661 * 60.00040 * 13 12 11 16 16 N 1.31510 * 120.00409 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99651 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47389 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47057 * 120.00069 * 17 15 13 20 20 H 1.48495 * 109.47216 * 239.99942 * 17 15 13 21 21 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 12 11 23 23 N 1.30255 * 108.76066 * 359.62921 * 6 5 4 24 24 H 1.08992 * 109.47379 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46489 * 300.00553 * 1 2 3 26 26 H 1.08998 * 109.46693 * 59.99673 * 1 2 3 27 27 H 1.09003 * 109.47208 * 239.99405 * 2 1 3 28 28 H 1.09007 * 109.47192 * 119.99965 * 2 1 3 29 29 H 1.07997 * 126.44053 * 0.06101 * 4 3 2 30 30 H 1.09005 * 109.46887 * 149.69014 * 7 6 5 31 31 H 1.09002 * 109.47143 * 29.69092 * 7 6 5 32 32 H 1.00902 * 110.99732 * 56.04320 * 8 7 6 33 33 H 1.08992 * 109.47407 * 325.00184 * 9 8 7 34 34 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 36 36 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 38 38 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 39 39 H 0.96998 * 120.00365 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46935 * 299.99411 * 21 12 11 41 41 H 1.09001 * 109.46812 * 179.97438 * 21 12 11 42 42 H 1.08993 * 109.47194 * 179.97438 * 22 21 12 43 43 H 1.09002 * 109.46695 * 59.99734 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8829 1.9609 0.8885 5 8 3.0730 3.2446 0.5256 6 6 2.3347 3.4735 -0.5686 7 6 2.2470 4.7825 -1.3102 8 7 1.1483 5.5858 -0.7574 9 6 1.0322 6.8717 -1.4580 10 6 0.3696 7.8970 -0.5356 11 6 0.2481 9.2361 -1.2655 12 6 -0.6041 9.0560 -2.5233 13 6 -1.9765 8.5692 -2.1349 14 1 -2.3397 7.6233 -2.5085 15 6 -2.7682 9.3317 -1.3025 16 7 -2.3261 10.4838 -0.8479 17 14 -4.4690 8.7280 -0.8204 18 1 -4.7270 7.4127 -1.4596 19 1 -4.5430 8.5835 0.6557 20 1 -5.4888 9.7076 -1.2736 21 6 0.0585 8.0306 -3.4457 22 6 0.1800 6.6915 -2.7159 23 7 1.7095 2.3767 -0.8891 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.3330 1.4593 1.7324 30 1 2.0603 4.5897 -2.3666 31 1 3.1855 5.3259 -1.2003 32 1 1.2651 5.7237 0.2353 33 1 2.0249 7.2236 -1.7386 34 1 -0.6232 7.5451 -0.2550 35 1 0.9765 8.0251 0.3607 36 1 -0.2236 9.9667 -0.6083 37 1 1.2407 9.5882 -1.5465 38 1 -0.6903 10.0099 -3.0436 39 1 -2.8830 11.0200 -0.2620 40 1 1.0511 8.3827 -3.7267 41 1 -0.5489 7.9020 -4.3416 42 1 0.6516 5.9610 -3.3731 43 1 -0.8126 6.3395 -2.4349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173323784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:01 Heat of formation + Delta-G solvation = -21.567356 kcal Electronic energy + Delta-G solvation = -21800.262361 eV Core-core repulsion = 18652.115972 eV Total energy + Delta-G solvation = -3148.146389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.29354 -39.82118 -36.65264 -36.54481 -34.27529 -33.56750 -31.57588 -31.02756 -29.48378 -27.17715 -26.01146 -24.82522 -23.28052 -22.31605 -22.06518 -21.70171 -20.43588 -18.14166 -17.72614 -17.65370 -16.85915 -16.58175 -16.02868 -15.90419 -15.47242 -15.33893 -14.80474 -14.74364 -14.58217 -14.35176 -13.75784 -13.34488 -13.26986 -13.00029 -12.90773 -12.76021 -12.59265 -12.39615 -12.36650 -12.23873 -12.18056 -11.79611 -11.75870 -11.40695 -11.39258 -11.00495 -10.63984 -10.49126 -10.29397 -9.73217 -9.38633 -8.01010 -6.09415 0.46532 1.38929 1.42865 1.52665 1.64729 1.80817 2.47581 2.98085 3.27515 3.31552 3.76756 3.97048 4.05501 4.15674 4.24769 4.37772 4.42175 4.50318 4.58593 4.65385 4.69805 4.79880 4.81577 4.90395 4.91437 4.96471 5.01289 5.03579 5.06594 5.19608 5.25462 5.30575 5.43913 5.46786 5.61269 5.64580 5.69958 5.77484 6.01499 6.10809 6.26909 6.36348 6.50825 6.82325 7.00362 7.56122 9.03805 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.003993 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.024711 B = 7010.707576 C = 7734.376835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 C -0.040 4.040 4 C -0.071 4.071 5 O -0.213 6.213 6 C 0.186 3.814 7 C 0.161 3.839 8 N -0.689 5.689 9 C 0.110 3.890 10 C -0.093 4.093 11 C -0.100 4.100 12 C 0.037 3.963 13 C -0.501 4.501 14 H 0.048 0.952 15 C 0.016 3.984 16 N -0.918 5.918 17 Si 0.936 3.064 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.102 4.102 22 C -0.087 4.087 23 N -0.493 5.493 24 H 0.079 0.921 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.255 0.745 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.344 0.656 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.032 0.968 38 H -0.010 1.010 39 H 0.256 0.744 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.925 -17.821 3.761 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.159 4.159 4 C -0.141 4.141 5 O -0.099 6.099 6 C -0.021 4.021 7 C 0.032 3.968 8 N -0.322 5.322 9 C 0.002 3.998 10 C -0.131 4.131 11 C -0.139 4.139 12 C 0.018 3.982 13 C -0.539 4.539 14 H 0.067 0.933 15 C -0.182 4.182 16 N -0.559 5.559 17 Si 0.764 3.236 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.140 4.140 22 C -0.125 4.125 23 N -0.224 5.224 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.128 0.872 29 H 0.271 0.729 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.008 0.992 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.020 -18.012 2.982 21.859 hybrid contribution -0.183 0.715 1.256 1.457 sum 11.837 -17.297 4.238 21.383 Atomic orbital electron populations 1.21651 0.95011 1.02344 1.01141 1.19992 0.95974 0.87081 1.04437 1.22412 1.00570 0.98816 0.94116 1.25591 1.03563 0.81277 1.03650 1.84442 1.56032 1.30250 1.39148 1.26335 0.91320 0.97728 0.86753 1.20323 0.94675 0.84207 0.97642 1.60392 1.45011 1.18503 1.08288 1.21366 0.97668 0.86482 0.94294 1.21386 0.99776 0.95232 0.96697 1.21334 0.96530 0.96627 0.99412 1.18710 0.93621 0.93167 0.92660 1.21440 1.00578 1.04394 1.27508 0.93332 1.25545 1.00755 0.95197 0.96703 1.69999 1.37654 1.13184 1.35096 0.85828 0.81642 0.78348 0.77803 1.19670 1.21041 1.20968 1.21476 0.98890 0.95876 0.97735 1.21310 0.99654 0.96256 0.95317 1.70313 1.23239 1.00193 1.28659 0.90201 0.93640 0.94391 0.90019 0.87245 0.72928 0.86967 0.90322 0.83699 0.92692 0.93470 0.93161 0.92328 0.94942 0.99200 0.93445 0.92685 0.93752 0.92217 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.89 71.98 0.71 -1.94 16 2 C -0.04 -0.60 6.50 29.85 0.19 -0.40 16 3 C -0.04 -0.90 6.37 41.26 0.26 -0.64 16 4 C -0.07 -1.33 12.06 66.93 0.81 -0.52 16 5 O -0.21 -5.14 10.78 -3.75 -0.04 -5.18 16 6 C 0.19 5.04 7.85 88.34 0.69 5.74 16 7 C 0.16 4.02 6.11 85.56 0.52 4.55 16 8 N -0.69 -20.74 6.30 -495.57 -3.12 -23.86 16 9 C 0.11 3.68 2.50 44.92 0.11 3.79 16 10 C -0.09 -3.71 4.97 30.59 0.15 -3.56 16 11 C -0.10 -4.59 5.23 30.59 0.16 -4.43 16 12 C 0.04 1.81 2.59 -11.54 -0.03 1.78 16 13 C -0.50 -27.20 6.61 25.60 0.17 -27.03 16 14 H 0.05 2.67 6.71 -2.91 -0.02 2.65 16 15 C 0.02 0.87 5.30 84.66 0.45 1.31 16 16 N -0.92 -53.08 11.32 21.45 0.24 -52.84 16 17 Si 0.94 44.70 29.54 68.60 2.03 46.73 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 C -0.10 -4.08 5.41 30.60 0.17 -3.91 16 22 C -0.09 -3.22 5.20 30.59 0.16 -3.07 16 23 N -0.49 -14.49 11.28 -291.99 -3.29 -17.78 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 0.89 8.14 -2.38 -0.02 0.88 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.11 1.00 8.11 -2.38 -0.02 0.98 16 29 H 0.25 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.11 2.80 7.44 -2.38 -0.02 2.78 16 31 H 0.08 1.61 8.06 -2.39 -0.02 1.59 16 32 H 0.34 9.94 8.34 -89.69 -0.75 9.19 16 33 H 0.06 1.64 7.80 -2.39 -0.02 1.62 16 34 H 0.05 2.20 7.22 -2.39 -0.02 2.18 16 35 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 36 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 37 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 43 H 0.05 2.05 6.62 -2.39 -0.02 2.03 16 Total: -1.00 -65.58 340.56 0.59 -64.99 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.24 Total: 16.28 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.53 Total: -28.34 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -6.17 Total: -94.49 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.04 Total: -5.18 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -65.58 0.59 -64.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173323784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.426 kcal (2) G-P(sol) polarization free energy of solvation -65.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds