Wall clock time and date at job start Tue Mar 31 2020 00:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30252 * 125.61791 * 2 1 4 4 C 1.34481 * 108.70108 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.16528 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47458 * 90.02137 * 5 4 3 7 7 C 1.46894 * 111.00430 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47515 * 205.00020 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 C 1.50701 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00246 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47008 * 60.00170 * 15 13 11 17 17 H 1.48496 * 109.46873 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47134 * 299.99873 * 15 13 11 19 19 C 1.53002 * 109.46891 * 299.99597 * 10 9 8 20 20 C 1.52997 * 109.46978 * 60.00410 * 19 10 9 21 21 C 1.34331 * 107.66632 * 0.25843 * 4 3 2 22 22 C 1.50692 * 126.44127 * 179.73634 * 21 4 3 23 23 O 1.33959 * 125.61838 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46915 * 90.00149 * 1 2 3 25 25 H 1.08993 * 109.46859 * 209.99875 * 1 2 3 26 26 H 1.09003 * 109.46790 * 330.00359 * 1 2 3 27 27 H 1.09000 * 109.46811 * 330.01726 * 5 4 3 28 28 H 1.09001 * 109.46991 * 210.02012 * 5 4 3 29 29 H 1.00901 * 111.00021 * 56.04380 * 6 5 4 30 30 H 1.08998 * 109.46828 * 325.00585 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 33 33 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 35 35 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 36 36 H 0.96991 * 120.00061 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.47097 * 180.02562 * 19 10 9 38 38 H 1.09001 * 109.47142 * 300.00176 * 19 10 9 39 39 H 1.09001 * 109.47375 * 59.99908 * 20 19 10 40 40 H 1.09000 * 109.47140 * 179.97438 * 20 19 10 41 41 H 1.09000 * 109.47592 * 90.00296 * 22 21 4 42 42 H 1.08999 * 109.47265 * 210.00210 * 22 21 4 43 43 H 1.09000 * 109.47271 * 330.00318 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5523 0.6675 0.0006 5 6 4.7571 1.5727 0.0013 6 7 5.1483 1.8663 1.3865 7 6 6.3226 2.7478 1.4264 8 6 7.0680 2.5450 2.7471 9 6 8.2908 3.4636 2.7888 10 6 7.8380 4.9208 2.6774 11 6 9.0425 5.8256 2.7179 12 1 10.0320 5.4035 2.8132 13 6 8.8813 7.1922 2.6323 14 7 7.6765 7.7062 2.5148 15 14 10.3743 8.3138 2.6833 16 1 11.2775 7.9874 1.5505 17 1 9.9348 9.7281 2.5750 18 1 11.0974 8.1175 3.9654 19 6 7.0927 5.1236 1.3567 20 6 5.8699 4.2051 1.3149 21 6 3.5698 -0.6757 -0.0048 22 6 4.7937 -1.5548 -0.0119 23 8 2.2873 -1.0890 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 4.5131 2.5027 -0.5122 28 1 5.5823 1.0796 -0.5125 29 1 5.3173 1.0158 1.9025 30 1 6.9851 2.5082 0.5947 31 1 7.3902 1.5067 2.8267 32 1 6.4054 2.7846 3.5787 33 1 8.8221 3.3188 3.7295 34 1 8.9535 3.2244 1.9572 35 1 7.1753 5.1600 3.5090 36 1 7.5631 8.6676 2.4550 37 1 6.7705 6.1619 1.2771 38 1 7.7554 4.8845 0.5250 39 1 5.2071 4.4443 2.1466 40 1 5.3386 4.3499 0.3742 41 1 5.0918 -1.7710 1.0140 42 1 4.5681 -2.4875 -0.5289 43 1 5.6066 -1.0419 -0.5261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:03 Heat of formation + Delta-G solvation = -4.111835 kcal Electronic energy + Delta-G solvation = -21599.421776 eV Core-core repulsion = 18452.032316 eV Total energy + Delta-G solvation = -3147.389461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.42013 -38.21049 -35.73408 -34.40385 -33.29304 -31.98157 -30.33699 -29.67947 -28.95135 -26.45141 -24.59012 -23.64591 -21.92566 -21.48035 -20.52426 -20.30961 -18.64465 -16.98719 -16.74462 -16.26623 -15.37086 -14.88284 -14.52989 -14.49287 -14.06011 -13.90512 -13.71031 -13.29049 -12.99099 -12.97716 -12.82105 -12.70095 -12.51482 -12.18819 -11.87750 -11.47359 -11.18963 -11.09339 -10.94179 -10.65367 -10.49490 -10.41560 -10.33838 -10.11057 -9.77928 -9.27499 -8.85801 -8.70845 -8.55082 -8.22842 -8.10400 -5.90699 -3.97174 1.31573 2.52957 2.57214 3.35462 3.40384 3.42598 3.87387 4.44961 4.50464 4.57863 4.81878 4.83827 5.07576 5.11486 5.14550 5.24683 5.37744 5.43573 5.45214 5.52248 5.61364 5.69404 5.92555 5.94714 5.99066 6.17563 6.25251 6.37323 6.48019 6.48696 6.68384 6.77421 6.80344 7.00145 7.20877 7.30498 7.44387 7.60984 7.63658 7.73118 7.83099 8.11004 8.25513 8.54850 9.06989 9.66977 11.14639 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036886 B = 0.003163 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.909380 B = 8849.112320 C = 9326.548403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.179 3.821 3 N -0.462 5.462 4 C 0.004 3.996 5 C 0.140 3.860 6 N -0.679 5.679 7 C 0.093 3.907 8 C -0.115 4.115 9 C -0.105 4.105 10 C 0.049 3.951 11 C -0.514 4.514 12 H 0.052 0.948 13 C 0.061 3.939 14 N -0.889 5.889 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.109 4.109 20 C -0.101 4.101 21 C -0.053 4.053 22 C -0.067 4.067 23 O -0.206 6.206 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.332 0.668 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.025 0.975 36 H 0.259 0.741 37 H 0.092 0.908 38 H 0.030 0.970 39 H 0.059 0.941 40 H 0.039 0.961 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 -18.470 -5.942 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.028 4.028 3 N -0.191 5.191 4 C -0.116 4.116 5 C 0.011 3.989 6 N -0.310 5.310 7 C -0.015 4.015 8 C -0.153 4.153 9 C -0.143 4.143 10 C 0.031 3.969 11 C -0.552 4.552 12 H 0.070 0.930 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.148 4.148 20 C -0.140 4.140 21 C -0.107 4.107 22 C -0.124 4.124 23 O -0.094 6.094 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.150 0.850 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.155 -17.191 -5.894 21.324 hybrid contribution 1.679 -0.638 -0.273 1.817 sum -9.477 -17.829 -6.167 21.112 Atomic orbital electron populations 1.20217 0.81401 1.05033 1.04451 1.26242 0.96390 0.78655 1.01521 1.70371 1.01676 1.29953 1.17137 1.21435 0.93318 0.91507 1.05356 1.20182 0.89903 0.97401 0.91436 1.60546 1.39200 1.19734 1.11541 1.21636 0.88505 0.94218 0.97182 1.21716 0.98346 0.98313 0.96919 1.21593 0.95062 0.97695 0.99983 1.18645 0.95203 0.89059 0.94032 1.21203 0.92985 0.91159 1.49873 0.92965 1.24969 0.95543 0.98185 0.95307 1.69870 1.20737 1.11825 1.50381 0.86728 0.83362 0.79792 0.78490 1.20413 1.21366 1.20397 1.21626 0.93935 1.00577 0.98631 1.21603 0.99375 0.92652 1.00337 1.23166 0.83882 0.95114 1.08504 1.20271 0.90103 0.98203 1.03828 1.84342 1.16538 1.37887 1.70588 0.89151 0.89592 0.88056 0.89143 0.93869 0.85026 0.94429 0.94013 0.91760 0.93372 0.93592 0.95641 0.93054 0.88959 0.95158 0.92254 0.94211 0.89754 0.90440 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.18 2.18 8.34 -12.94 -0.11 2.08 16 3 N -0.46 -7.02 11.29 -7.36 -0.08 -7.10 16 4 C 0.00 0.06 6.62 -82.81 -0.55 -0.49 16 5 C 0.14 1.98 5.82 -4.98 -0.03 1.95 16 6 N -0.68 -10.43 6.30 -108.00 -0.68 -11.11 16 7 C 0.09 1.60 2.49 -67.71 -0.17 1.43 16 8 C -0.11 -2.01 5.19 -26.73 -0.14 -2.15 16 9 C -0.11 -2.18 5.14 -26.73 -0.14 -2.31 16 10 C 0.05 1.23 2.10 -91.77 -0.19 1.03 16 11 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 12 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.75 11.32 55.43 0.63 -25.13 16 15 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.11 -2.61 4.98 -26.73 -0.13 -2.74 16 20 C -0.10 -2.07 5.42 -26.73 -0.14 -2.21 16 21 C -0.05 -0.64 7.39 -35.69 -0.26 -0.90 16 22 C -0.07 -0.54 10.22 36.00 0.37 -0.17 16 23 O -0.21 -2.55 10.78 5.37 0.06 -2.49 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.41 7.44 -51.93 -0.39 1.03 16 28 H 0.04 0.52 7.07 -51.93 -0.37 0.16 16 29 H 0.33 4.57 8.34 -39.29 -0.33 4.24 16 30 H 0.04 0.64 7.80 -51.93 -0.40 0.24 16 31 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.09 2.49 6.07 -51.93 -0.31 2.18 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.04 0.78 7.45 -51.93 -0.39 0.39 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.65 7.16 -51.93 -0.37 0.27 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -31.58 343.69 -8.60 -40.19 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.17 Total: 1.38 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -1.51 Total: -17.40 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.14 Total: -43.34 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: 0.06 Total: -2.49 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.58 -8.60 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.073 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds