Wall clock time and date at job start Tue Mar 31 2020 00:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30252 * 125.61791 * 2 1 4 4 C 1.34481 * 108.70108 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.16528 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47458 * 90.02137 * 5 4 3 7 7 C 1.46894 * 111.00430 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47515 * 205.00020 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 C 1.50701 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00246 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47008 * 60.00170 * 15 13 11 17 17 H 1.48496 * 109.46873 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47134 * 299.99873 * 15 13 11 19 19 C 1.53002 * 109.46891 * 299.99597 * 10 9 8 20 20 C 1.52997 * 109.46978 * 60.00410 * 19 10 9 21 21 C 1.34331 * 107.66632 * 0.25843 * 4 3 2 22 22 C 1.50692 * 126.44127 * 179.73634 * 21 4 3 23 23 O 1.33959 * 125.61838 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46915 * 90.00149 * 1 2 3 25 25 H 1.08993 * 109.46859 * 209.99875 * 1 2 3 26 26 H 1.09003 * 109.46790 * 330.00359 * 1 2 3 27 27 H 1.09000 * 109.46811 * 330.01726 * 5 4 3 28 28 H 1.09001 * 109.46991 * 210.02012 * 5 4 3 29 29 H 1.00901 * 111.00021 * 56.04380 * 6 5 4 30 30 H 1.08998 * 109.46828 * 325.00585 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 33 33 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 35 35 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 36 36 H 0.96991 * 120.00061 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.47097 * 180.02562 * 19 10 9 38 38 H 1.09001 * 109.47142 * 300.00176 * 19 10 9 39 39 H 1.09001 * 109.47375 * 59.99908 * 20 19 10 40 40 H 1.09000 * 109.47140 * 179.97438 * 20 19 10 41 41 H 1.09000 * 109.47592 * 90.00296 * 22 21 4 42 42 H 1.08999 * 109.47265 * 210.00210 * 22 21 4 43 43 H 1.09000 * 109.47271 * 330.00318 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5523 0.6675 0.0006 5 6 4.7571 1.5727 0.0013 6 7 5.1483 1.8663 1.3865 7 6 6.3226 2.7478 1.4264 8 6 7.0680 2.5450 2.7471 9 6 8.2908 3.4636 2.7888 10 6 7.8380 4.9208 2.6774 11 6 9.0425 5.8256 2.7179 12 1 10.0320 5.4035 2.8132 13 6 8.8813 7.1922 2.6323 14 7 7.6765 7.7062 2.5148 15 14 10.3743 8.3138 2.6833 16 1 11.2775 7.9874 1.5505 17 1 9.9348 9.7281 2.5750 18 1 11.0974 8.1175 3.9654 19 6 7.0927 5.1236 1.3567 20 6 5.8699 4.2051 1.3149 21 6 3.5698 -0.6757 -0.0048 22 6 4.7937 -1.5548 -0.0119 23 8 2.2873 -1.0890 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 4.5131 2.5027 -0.5122 28 1 5.5823 1.0796 -0.5125 29 1 5.3173 1.0158 1.9025 30 1 6.9851 2.5082 0.5947 31 1 7.3902 1.5067 2.8267 32 1 6.4054 2.7846 3.5787 33 1 8.8221 3.3188 3.7295 34 1 8.9535 3.2244 1.9572 35 1 7.1753 5.1600 3.5090 36 1 7.5631 8.6676 2.4550 37 1 6.7705 6.1619 1.2771 38 1 7.7554 4.8845 0.5250 39 1 5.2071 4.4443 2.1466 40 1 5.3386 4.3499 0.3742 41 1 5.0918 -1.7710 1.0140 42 1 4.5681 -2.4875 -0.5289 43 1 5.6066 -1.0419 -0.5261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:02 Heat of formation + Delta-G solvation = -26.072557 kcal Electronic energy + Delta-G solvation = -21600.374065 eV Core-core repulsion = 18452.032316 eV Total energy + Delta-G solvation = -3148.341749 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.33333 -39.75767 -37.02370 -35.59033 -34.57727 -33.53811 -31.38968 -30.95028 -30.52685 -27.77235 -25.99806 -24.98197 -23.34644 -22.64837 -22.01270 -21.44690 -20.36801 -18.37524 -17.90692 -17.72144 -16.71055 -16.38837 -15.95484 -15.68144 -15.28186 -14.91558 -14.73786 -14.64275 -14.27222 -14.17192 -13.92765 -13.52755 -13.49363 -13.30147 -13.22238 -13.00936 -12.88197 -12.70526 -12.51655 -12.30309 -12.06712 -11.96267 -11.84453 -11.68723 -11.42357 -11.14836 -10.73521 -10.50961 -10.34259 -9.54896 -9.32020 -8.04445 -6.19257 0.43583 1.41926 1.43274 1.50897 1.59707 1.73285 2.45074 3.03763 3.21093 3.32511 3.77056 3.81191 3.96342 4.11019 4.17692 4.35546 4.44915 4.49339 4.60689 4.63373 4.64301 4.67168 4.72912 4.83970 4.86458 4.89142 4.89977 4.98123 5.02389 5.09902 5.19545 5.20424 5.32879 5.37779 5.44429 5.52010 5.63541 5.72556 6.06060 6.10169 6.23193 6.43874 6.51428 6.80612 6.94623 7.48830 8.99149 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036886 B = 0.003163 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.909380 B = 8849.112320 C = 9326.548403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.178 3.822 3 N -0.509 5.509 4 C -0.029 4.029 5 C 0.146 3.854 6 N -0.685 5.685 7 C 0.106 3.894 8 C -0.106 4.106 9 C -0.098 4.098 10 C 0.045 3.955 11 C -0.535 4.535 12 H 0.053 0.947 13 C 0.009 3.991 14 N -0.918 5.918 15 Si 0.952 3.048 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.100 4.100 20 C -0.092 4.092 21 C -0.044 4.044 22 C -0.068 4.068 23 O -0.210 6.210 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.346 0.654 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.052 0.948 35 H -0.012 1.012 36 H 0.259 0.741 37 H 0.054 0.946 38 H 0.029 0.971 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 -20.998 -6.376 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.029 4.029 3 N -0.239 5.239 4 C -0.148 4.148 5 C 0.017 3.983 6 N -0.318 5.318 7 C -0.003 4.003 8 C -0.144 4.144 9 C -0.136 4.136 10 C 0.026 3.974 11 C -0.573 4.573 12 H 0.072 0.928 13 C -0.189 4.189 14 N -0.558 5.558 15 Si 0.778 3.222 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.138 4.138 20 C -0.131 4.131 21 C -0.097 4.097 22 C -0.124 4.124 23 O -0.099 6.099 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.006 0.994 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.596 -19.739 -6.325 23.279 hybrid contribution 1.437 0.143 -0.139 1.451 sum -9.159 -19.597 -6.463 22.576 Atomic orbital electron populations 1.20481 0.78307 1.06208 1.06022 1.27158 0.97915 0.78025 0.99842 1.70333 1.02752 1.31727 1.19129 1.21481 0.93032 0.92522 1.07800 1.20093 0.90952 0.96752 0.90484 1.60340 1.38114 1.20416 1.12917 1.21351 0.89202 0.92231 0.97529 1.21617 0.96600 0.99686 0.96504 1.21451 0.96600 0.95272 1.00311 1.18628 0.93892 0.91878 0.92989 1.21630 0.93863 0.92066 1.49722 0.92846 1.25785 0.98283 0.99819 0.95034 1.70039 1.22739 1.11929 1.51101 0.85701 0.79971 0.77676 0.78839 1.19528 1.21199 1.19643 1.21401 0.95130 0.99280 0.98020 1.21435 0.97323 0.94742 0.99569 1.23808 0.84712 0.94962 1.06260 1.20496 0.88475 0.98316 1.05143 1.84375 1.16869 1.38009 1.70614 0.87253 0.87263 0.87942 0.91524 0.91340 0.83437 0.93326 0.89990 0.92896 0.93215 0.92922 0.99397 0.93228 0.92760 0.95268 0.94428 0.93881 0.88294 0.88767 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.66 10.51 71.24 0.75 0.09 16 2 C 0.18 4.14 8.34 88.35 0.74 4.88 16 3 N -0.51 -15.36 11.29 -291.98 -3.30 -18.65 16 4 C -0.03 -0.80 6.62 41.26 0.27 -0.52 16 5 C 0.15 3.95 5.82 85.56 0.50 4.45 16 6 N -0.69 -19.99 6.30 -495.59 -3.12 -23.11 16 7 C 0.11 3.50 2.49 44.92 0.11 3.61 16 8 C -0.11 -3.50 5.19 30.59 0.16 -3.34 16 9 C -0.10 -3.97 5.14 30.59 0.16 -3.82 16 10 C 0.04 2.29 2.10 -11.54 -0.02 2.26 16 11 C -0.53 -30.08 8.56 25.60 0.22 -29.86 16 12 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 13 C 0.01 0.51 5.30 84.66 0.45 0.96 16 14 N -0.92 -54.99 11.32 21.45 0.24 -54.75 16 15 Si 0.95 44.51 29.54 68.60 2.03 46.53 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 C -0.10 -4.91 4.98 30.59 0.15 -4.76 16 20 C -0.09 -3.84 5.42 30.60 0.17 -3.68 16 21 C -0.04 -0.96 7.39 24.79 0.18 -0.78 16 22 C -0.07 -0.85 10.22 71.23 0.73 -0.13 16 23 O -0.21 -4.85 10.78 -3.68 -0.04 -4.89 16 24 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 2.10 7.44 -2.39 -0.02 2.08 16 28 H 0.07 1.48 7.07 -2.39 -0.02 1.46 16 29 H 0.35 8.58 8.34 -89.69 -0.75 7.83 16 30 H 0.05 1.54 7.80 -2.39 -0.02 1.52 16 31 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.05 3.08 6.07 -2.39 -0.01 3.06 16 38 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.73 7.45 -2.39 -0.02 1.71 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 1.07 7.16 -2.39 -0.02 1.06 16 Total: -1.00 -70.92 343.69 0.61 -70.31 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.24 Total: 15.19 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 4.56 Total: -30.63 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -6.18 Total: -96.51 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.04 Total: -4.89 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -70.92 0.61 -70.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.238 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds