Wall clock time and date at job start Tue Mar 31 2020 00:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30176 * 126.79970 * 2 1 4 4 O 1.20925 * 111.59785 * 180.25263 * 3 2 1 5 5 C 1.34036 * 111.56958 * 359.74890 * 4 3 2 6 6 C 1.50701 * 126.77514 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44707 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.00610 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.47109 * 90.00334 * 8 7 5 10 10 C 1.46894 * 111.00270 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47515 * 154.99879 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 14 14 C 1.50706 * 109.46931 * 300.00761 * 13 12 11 15 15 H 1.07999 * 120.00193 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99730 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47118 * 89.99831 * 18 16 14 20 20 H 1.48499 * 109.47293 * 209.99834 * 18 16 14 21 21 H 1.48504 * 109.47104 * 330.00080 * 18 16 14 22 22 C 1.52997 * 109.46817 * 60.00194 * 13 12 11 23 23 C 1.52999 * 109.46927 * 275.00239 * 10 9 8 24 24 H 1.08998 * 109.46999 * 270.16576 * 1 2 3 25 25 H 1.09004 * 109.46689 * 30.16279 * 1 2 3 26 26 H 1.08998 * 109.47293 * 150.16132 * 1 2 3 27 27 H 1.08994 * 109.46927 * 269.99591 * 6 5 4 28 28 H 1.09001 * 109.47188 * 30.00170 * 6 5 4 29 29 H 1.08997 * 109.47266 * 149.99797 * 6 5 4 30 30 H 1.09000 * 109.47093 * 330.00484 * 8 7 5 31 31 H 1.08998 * 109.46898 * 210.00085 * 8 7 5 32 32 H 1.00901 * 111.00119 * 56.04427 * 9 8 7 33 33 H 1.09002 * 109.47104 * 34.99612 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99762 * 11 10 9 35 35 H 1.09001 * 109.46832 * 299.99953 * 11 10 9 36 36 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 12 11 10 38 38 H 1.08993 * 109.47662 * 180.02562 * 13 12 11 39 39 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.47153 * 60.00231 * 22 13 12 41 41 H 1.09001 * 109.47289 * 180.02562 * 22 13 12 42 42 H 1.09000 * 109.47486 * 59.99528 * 23 10 9 43 43 H 1.09002 * 109.46716 * 299.99610 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0035 6 6 4.9022 -1.3696 -0.0089 7 6 2.3539 -1.1320 0.0037 8 6 1.9591 -2.5864 0.0076 9 7 1.8380 -3.0572 1.3939 10 6 1.4541 -4.4744 1.4369 11 6 1.9249 -5.0907 2.7557 12 6 1.5255 -6.5669 2.8002 13 6 0.0038 -6.6869 2.6958 14 6 -0.6378 -5.9579 3.8482 15 1 -0.0218 -5.4592 4.5819 16 6 -2.0112 -5.9276 3.9658 17 7 -2.7614 -6.5344 3.0721 18 14 -2.8065 -5.0245 5.3946 19 1 -3.0567 -3.6121 5.0099 20 1 -4.0942 -5.6792 5.7389 21 1 -1.9009 -5.0641 6.5709 22 6 -0.4671 -6.0707 1.3770 23 6 -0.0677 -4.5939 1.3327 24 1 -0.3633 0.0030 1.0276 25 1 -0.3633 0.8886 -0.5164 26 1 -0.3634 -0.8914 -0.5113 27 1 5.2102 -1.5552 -1.0379 28 1 5.6686 -0.7851 0.5000 29 1 4.7678 -2.3201 0.5071 30 1 2.7201 -3.1708 -0.5095 31 1 1.0023 -2.7044 -0.5010 32 1 1.1851 -2.4894 1.9129 33 1 1.9178 -5.0020 0.6033 34 1 1.4612 -4.5631 3.5893 35 1 3.0091 -5.0056 2.8299 36 1 1.9895 -7.0941 1.9667 37 1 1.8606 -7.0058 3.7400 38 1 -0.2809 -7.7386 2.7279 39 1 -3.7276 -6.5127 3.1548 40 1 -0.0030 -6.5980 0.5434 41 1 -1.5512 -6.1558 1.3028 42 1 -0.4032 -4.1548 0.3931 43 1 -0.5314 -4.0663 2.1662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:32 Heat of formation + Delta-G solvation = 32.531056 kcal Electronic energy + Delta-G solvation = -22308.516635 eV Core-core repulsion = 19162.716130 eV Total energy + Delta-G solvation = -3145.800506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.89232 -38.33469 -35.98377 -34.12419 -33.35647 -31.91526 -29.55024 -29.07826 -28.63508 -27.47730 -25.43118 -24.23623 -21.61076 -21.28586 -20.66951 -20.13109 -18.72951 -17.65121 -16.91470 -15.94212 -15.21289 -14.78912 -14.58097 -14.45181 -13.87412 -13.51193 -13.37715 -13.28809 -13.16972 -12.96575 -12.70305 -12.63364 -12.28157 -12.17175 -11.78419 -11.36239 -11.22127 -11.03213 -10.90376 -10.88493 -10.57344 -10.33753 -10.09179 -9.88500 -9.68112 -9.30438 -9.05512 -8.99749 -8.68800 -8.30475 -7.88437 -5.96542 -4.00679 1.46689 2.19153 3.11478 3.28819 3.36890 3.40067 4.17137 4.44249 4.45258 4.59273 4.85370 5.03639 5.23282 5.31293 5.33847 5.38015 5.43862 5.53497 5.60733 5.67499 5.74338 5.78784 5.88392 5.92795 6.06824 6.16734 6.31367 6.43517 6.45018 6.52539 6.74595 6.76071 6.87683 7.08829 7.18412 7.30757 7.47253 7.58030 7.69968 7.77274 7.94832 8.16227 8.29181 8.49958 9.02224 9.62580 11.09176 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.004557 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.996817 B = 6142.531407 C = 6815.312511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 N -0.373 5.373 4 O 0.090 5.910 5 C -0.018 4.018 6 C -0.073 4.073 7 C -0.193 4.193 8 C 0.136 3.864 9 N -0.683 5.683 10 C 0.093 3.907 11 C -0.091 4.091 12 C -0.107 4.107 13 C 0.043 3.957 14 C -0.499 4.499 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.104 4.104 23 C -0.126 4.126 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.341 0.659 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.046 0.954 38 H 0.023 0.977 39 H 0.258 0.742 40 H 0.012 0.988 41 H 0.089 0.911 42 H 0.027 0.973 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.762 8.626 -7.870 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 N -0.080 5.080 4 O 0.027 5.973 5 C -0.082 4.082 6 C -0.130 4.130 7 C -0.198 4.198 8 C 0.007 3.993 9 N -0.313 5.313 10 C -0.015 4.015 11 C -0.129 4.129 12 C -0.145 4.145 13 C 0.024 3.976 14 C -0.537 4.537 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.711 3.289 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.143 4.143 23 C -0.165 4.165 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.159 0.841 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.031 0.969 41 H 0.108 0.892 42 H 0.046 0.954 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.047 9.782 -7.842 16.710 hybrid contribution -1.680 -0.145 0.506 1.760 sum 9.368 9.637 -7.336 15.312 Atomic orbital electron populations 1.20190 0.86076 1.03607 1.03692 1.23480 0.98869 0.88679 1.02351 1.73819 0.89309 1.23984 1.20889 1.84767 1.21659 1.22772 1.68128 1.24252 0.98375 0.83446 1.02111 1.20350 0.89773 0.99236 1.03649 1.20949 0.91587 0.97379 1.09849 1.20101 1.00084 0.87393 0.91722 1.60756 1.55270 1.04393 1.10891 1.21615 0.95085 0.86329 0.98503 1.21332 0.98215 0.96481 0.96839 1.21561 0.99476 0.94622 0.98875 1.18694 0.89033 0.96373 0.93465 1.21164 0.91038 1.32674 1.08819 0.92678 1.24933 0.97524 0.95663 0.95858 1.69868 1.04651 1.43812 1.34808 0.86746 0.78951 0.79867 0.83346 1.20902 1.21393 1.19992 1.21462 1.03526 0.92512 0.96753 1.22030 0.94798 1.00112 0.99560 0.89926 0.90708 0.90005 0.89838 0.90111 0.88227 0.90170 0.93906 0.84114 0.91964 0.91315 0.93969 0.94936 0.93475 0.95877 0.93226 0.96881 0.89230 0.95401 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.39 36.01 0.37 -0.52 16 2 C 0.03 0.35 7.33 -82.10 -0.60 -0.26 16 3 N -0.37 -5.50 12.07 33.42 0.40 -5.10 16 4 O 0.09 1.23 11.20 17.19 0.19 1.42 16 5 C -0.02 -0.21 7.49 -35.30 -0.26 -0.47 16 6 C -0.07 -0.59 10.25 36.01 0.37 -0.22 16 7 C -0.19 -2.50 5.83 -104.42 -0.61 -3.11 16 8 C 0.14 1.75 5.73 -4.97 -0.03 1.72 16 9 N -0.68 -10.06 6.24 -108.00 -0.67 -10.74 16 10 C 0.09 1.57 2.47 -67.72 -0.17 1.40 16 11 C -0.09 -1.65 5.30 -26.73 -0.14 -1.79 16 12 C -0.11 -2.14 5.41 -26.73 -0.14 -2.28 16 13 C 0.04 1.01 2.59 -91.77 -0.24 0.78 16 14 C -0.50 -12.89 6.61 -34.44 -0.23 -13.12 16 15 H 0.06 1.43 6.71 -52.49 -0.35 1.08 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -24.73 11.32 55.43 0.63 -24.11 16 18 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.10 -2.33 5.24 -26.70 -0.14 -2.47 16 23 C -0.13 -2.45 4.96 -26.70 -0.13 -2.58 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.87 7.65 -51.93 -0.40 0.47 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.84 8.05 -51.93 -0.42 0.43 16 30 H 0.08 0.94 7.99 -51.93 -0.41 0.53 16 31 H 0.04 0.56 6.95 -51.93 -0.36 0.20 16 32 H 0.34 5.29 8.47 -39.29 -0.33 4.96 16 33 H 0.06 1.02 7.80 -51.93 -0.40 0.61 16 34 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 42 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 43 H 0.07 1.58 7.21 -51.93 -0.37 1.21 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -28.05 339.12 -8.45 -36.50 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.04 Total: 2.50 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -2.05 Total: -21.40 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.36 Total: -39.94 kcal Atomic # 8 Polarization: 1.23 SS G_CDS: 0.19 Total: 1.42 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.05 -8.45 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.029 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds