Wall clock time and date at job start Tue Mar 31 2020 00:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30176 * 126.79970 * 2 1 4 4 O 1.20925 * 111.59785 * 180.25263 * 3 2 1 5 5 C 1.34036 * 111.56958 * 359.74890 * 4 3 2 6 6 C 1.50701 * 126.77514 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44707 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.00610 * 179.97438 * 7 5 4 9 9 N 1.46903 * 109.47109 * 90.00334 * 8 7 5 10 10 C 1.46894 * 111.00270 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47515 * 154.99879 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 14 14 C 1.50706 * 109.46931 * 300.00761 * 13 12 11 15 15 H 1.07999 * 120.00193 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99730 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47118 * 89.99831 * 18 16 14 20 20 H 1.48499 * 109.47293 * 209.99834 * 18 16 14 21 21 H 1.48504 * 109.47104 * 330.00080 * 18 16 14 22 22 C 1.52997 * 109.46817 * 60.00194 * 13 12 11 23 23 C 1.52999 * 109.46927 * 275.00239 * 10 9 8 24 24 H 1.08998 * 109.46999 * 270.16576 * 1 2 3 25 25 H 1.09004 * 109.46689 * 30.16279 * 1 2 3 26 26 H 1.08998 * 109.47293 * 150.16132 * 1 2 3 27 27 H 1.08994 * 109.46927 * 269.99591 * 6 5 4 28 28 H 1.09001 * 109.47188 * 30.00170 * 6 5 4 29 29 H 1.08997 * 109.47266 * 149.99797 * 6 5 4 30 30 H 1.09000 * 109.47093 * 330.00484 * 8 7 5 31 31 H 1.08998 * 109.46898 * 210.00085 * 8 7 5 32 32 H 1.00901 * 111.00119 * 56.04427 * 9 8 7 33 33 H 1.09002 * 109.47104 * 34.99612 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99762 * 11 10 9 35 35 H 1.09001 * 109.46832 * 299.99953 * 11 10 9 36 36 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 12 11 10 38 38 H 1.08993 * 109.47662 * 180.02562 * 13 12 11 39 39 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.47153 * 60.00231 * 22 13 12 41 41 H 1.09001 * 109.47289 * 180.02562 * 22 13 12 42 42 H 1.09000 * 109.47486 * 59.99528 * 23 10 9 43 43 H 1.09002 * 109.46716 * 299.99610 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0035 6 6 4.9022 -1.3696 -0.0089 7 6 2.3539 -1.1320 0.0037 8 6 1.9591 -2.5864 0.0076 9 7 1.8380 -3.0572 1.3939 10 6 1.4541 -4.4744 1.4369 11 6 1.9249 -5.0907 2.7557 12 6 1.5255 -6.5669 2.8002 13 6 0.0038 -6.6869 2.6958 14 6 -0.6378 -5.9579 3.8482 15 1 -0.0218 -5.4592 4.5819 16 6 -2.0112 -5.9276 3.9658 17 7 -2.7614 -6.5344 3.0721 18 14 -2.8065 -5.0245 5.3946 19 1 -3.0567 -3.6121 5.0099 20 1 -4.0942 -5.6792 5.7389 21 1 -1.9009 -5.0641 6.5709 22 6 -0.4671 -6.0707 1.3770 23 6 -0.0677 -4.5939 1.3327 24 1 -0.3633 0.0030 1.0276 25 1 -0.3633 0.8886 -0.5164 26 1 -0.3634 -0.8914 -0.5113 27 1 5.2102 -1.5552 -1.0379 28 1 5.6686 -0.7851 0.5000 29 1 4.7678 -2.3201 0.5071 30 1 2.7201 -3.1708 -0.5095 31 1 1.0023 -2.7044 -0.5010 32 1 1.1851 -2.4894 1.9129 33 1 1.9178 -5.0020 0.6033 34 1 1.4612 -4.5631 3.5893 35 1 3.0091 -5.0056 2.8299 36 1 1.9895 -7.0941 1.9667 37 1 1.8606 -7.0058 3.7400 38 1 -0.2809 -7.7386 2.7279 39 1 -3.7276 -6.5127 3.1548 40 1 -0.0030 -6.5980 0.5434 41 1 -1.5512 -6.1558 1.3028 42 1 -0.4032 -4.1548 0.3931 43 1 -0.5314 -4.0663 2.1662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:32 Heat of formation + Delta-G solvation = 17.010701 kcal Electronic energy + Delta-G solvation = -22309.189649 eV Core-core repulsion = 19162.716130 eV Total energy + Delta-G solvation = -3146.473519 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.88541 -39.83615 -37.19630 -35.36317 -34.47360 -33.59645 -31.17648 -30.39094 -29.61371 -28.49675 -26.97750 -25.75134 -23.12607 -22.43781 -22.12321 -21.10532 -20.44698 -18.65884 -17.99743 -17.69656 -16.80039 -16.32219 -15.96867 -15.48717 -15.28252 -14.86064 -14.61067 -14.33758 -14.26673 -14.12079 -13.85194 -13.63004 -13.41464 -13.24016 -13.16652 -12.92414 -12.84930 -12.65241 -12.53979 -12.41956 -12.13941 -11.87072 -11.70523 -11.42231 -11.01337 -10.80113 -10.68776 -10.55426 -10.31886 -10.05860 -9.17612 -8.01094 -6.10417 0.53200 1.19648 1.39317 1.42723 1.50323 2.24271 2.46309 3.21805 3.27126 3.41814 3.57779 3.91511 4.05744 4.12619 4.29980 4.40636 4.52017 4.54767 4.63800 4.66134 4.75869 4.76745 4.78030 4.81105 4.89679 4.93567 4.93711 5.00519 5.06386 5.17436 5.19030 5.31594 5.32881 5.50181 5.61147 5.65201 5.68696 5.77988 6.00228 6.24158 6.27790 6.44965 6.51464 7.00254 7.32889 7.55350 9.03184 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.004557 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.996817 B = 6142.531407 C = 6815.312511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 N -0.401 5.401 4 O 0.081 5.919 5 C -0.007 4.007 6 C -0.072 4.072 7 C -0.211 4.211 8 C 0.142 3.858 9 N -0.677 5.677 10 C 0.107 3.893 11 C -0.084 4.084 12 C -0.102 4.102 13 C 0.036 3.964 14 C -0.501 4.501 15 H 0.051 0.949 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.936 3.064 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.271 1.271 22 C -0.100 4.100 23 C -0.116 4.116 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.336 0.664 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.043 0.957 38 H -0.014 1.014 39 H 0.255 0.745 40 H 0.028 0.972 41 H 0.053 0.947 42 H 0.042 0.958 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.653 9.265 -8.445 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 N -0.110 5.110 4 O 0.020 5.980 5 C -0.072 4.072 6 C -0.129 4.129 7 C -0.216 4.216 8 C 0.013 3.987 9 N -0.306 5.306 10 C -0.002 4.002 11 C -0.122 4.122 12 C -0.140 4.140 13 C 0.018 3.982 14 C -0.539 4.539 15 H 0.070 0.930 16 C -0.182 4.182 17 N -0.560 5.560 18 Si 0.763 3.237 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.196 1.196 22 C -0.139 4.139 23 C -0.155 4.155 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.153 0.847 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.004 0.996 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.963 10.429 -8.414 18.644 hybrid contribution -2.235 -0.375 0.669 2.363 sum 10.728 10.054 -7.745 16.618 Atomic orbital electron populations 1.20251 0.85100 1.04341 1.03874 1.23871 0.99776 0.88892 1.01756 1.73811 0.89879 1.24868 1.22475 1.84737 1.21288 1.23733 1.68280 1.24938 0.99595 0.82859 0.99793 1.20552 0.88212 0.98794 1.05341 1.20995 0.91968 0.97218 1.11371 1.20114 1.00625 0.87529 0.90436 1.60732 1.54580 1.03068 1.12234 1.21403 0.92760 0.87815 0.98256 1.21248 0.99443 0.94752 0.96792 1.21464 0.96482 0.96419 0.99599 1.18708 0.91881 0.93918 0.93685 1.21413 0.91171 1.32120 1.09214 0.93034 1.25568 0.98240 0.96560 0.97882 1.70010 1.04573 1.45144 1.36241 0.85889 0.77944 0.78887 0.80938 1.20471 1.21570 1.19568 1.21316 1.01304 0.94785 0.96456 1.21894 0.96974 0.97484 0.99104 0.89947 0.89967 0.89300 0.87546 0.88622 0.88037 0.88364 0.94049 0.84684 0.90281 0.93591 0.91559 0.92898 0.93826 0.99598 0.93531 0.95335 0.92862 0.93947 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.39 71.24 0.74 -0.97 16 2 C 0.02 0.41 7.33 43.58 0.32 0.73 16 3 N -0.40 -11.50 12.07 -49.56 -0.60 -12.10 16 4 O 0.08 2.09 11.20 71.67 0.80 2.89 16 5 C -0.01 -0.16 7.49 25.04 0.19 0.03 16 6 C -0.07 -0.91 10.25 71.24 0.73 -0.18 16 7 C -0.21 -5.01 5.83 -19.74 -0.12 -5.12 16 8 C 0.14 3.22 5.73 85.56 0.49 3.71 16 9 N -0.68 -18.19 6.24 -495.59 -3.09 -21.28 16 10 C 0.11 3.31 2.47 44.92 0.11 3.42 16 11 C -0.08 -2.88 5.30 30.59 0.16 -2.72 16 12 C -0.10 -3.91 5.41 30.60 0.17 -3.74 16 13 C 0.04 1.75 2.59 -11.54 -0.03 1.72 16 14 C -0.50 -26.19 6.61 25.60 0.17 -26.02 16 15 H 0.05 2.68 6.71 -2.91 -0.02 2.67 16 16 C 0.02 0.82 5.30 84.66 0.45 1.27 16 17 N -0.92 -52.24 11.32 21.45 0.24 -51.99 16 18 Si 0.94 43.19 29.54 68.60 2.03 45.22 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 C -0.10 -4.46 5.24 30.61 0.16 -4.30 16 23 C -0.12 -4.37 4.96 30.61 0.15 -4.22 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.09 1.77 7.65 -2.39 -0.02 1.76 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.32 8.05 -2.39 -0.02 1.30 16 30 H 0.10 1.90 7.99 -2.39 -0.02 1.88 16 31 H 0.04 0.97 6.95 -2.39 -0.02 0.95 16 32 H 0.34 9.85 8.47 -89.69 -0.76 9.09 16 33 H 0.08 2.26 7.80 -2.39 -0.02 2.24 16 34 H 0.05 1.78 6.62 -2.39 -0.02 1.77 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 2.78 6.07 -2.39 -0.01 2.76 16 42 H 0.04 1.46 7.45 -2.39 -0.02 1.44 16 43 H 0.04 1.91 7.21 -2.39 -0.02 1.89 16 Total: -1.00 -61.06 339.12 3.31 -57.74 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.24 Total: 15.91 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 3.69 Total: -36.39 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -3.45 Total: -85.37 kcal Atomic # 8 Polarization: 2.09 SS G_CDS: 0.80 Total: 2.89 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -61.06 3.31 -57.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.755 kcal (2) G-P(sol) polarization free energy of solvation -61.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds