Wall clock time and date at job start Tue Mar 31 2020 00:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34847 * 126.29299 * 2 1 4 4 N 1.36338 * 108.21916 * 180.02562 * 3 2 1 5 5 H 0.97008 * 125.63248 * 180.02562 * 4 3 2 6 6 C 1.36335 * 108.73049 * 359.77633 * 4 3 2 7 7 C 1.50698 * 125.89553 * 180.25660 * 6 4 3 8 8 C 1.34853 * 108.21734 * 0.37000 * 6 4 3 9 9 C 1.50697 * 126.29349 * 179.89627 * 8 6 4 10 10 C 1.52997 * 109.47466 * 269.69006 * 9 8 6 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47452 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47088 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00531 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99882 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99989 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47107 * 59.99828 * 21 19 17 23 23 H 1.48500 * 109.47454 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99653 * 21 19 17 25 25 H 1.09003 * 109.46871 * 269.97484 * 1 2 3 26 26 H 1.09004 * 109.46966 * 29.97383 * 1 2 3 27 27 H 1.08999 * 109.47291 * 149.97206 * 1 2 3 28 28 H 1.08002 * 125.88645 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46977 * 270.13673 * 7 6 4 30 30 H 1.09000 * 109.46963 * 30.12858 * 7 6 4 31 31 H 1.08996 * 109.47163 * 150.13018 * 7 6 4 32 32 H 1.09002 * 109.47120 * 149.68759 * 9 8 6 33 33 H 1.08998 * 109.46862 * 29.69561 * 9 8 6 34 34 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 35 35 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 36 36 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 37 37 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 38 38 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 39 39 H 1.09001 * 109.47289 * 299.99909 * 15 14 13 40 40 H 1.09002 * 109.47153 * 59.99993 * 15 14 13 41 41 H 1.08998 * 109.47061 * 300.00668 * 16 15 14 42 42 H 1.09002 * 109.46668 * 60.00355 * 16 15 14 43 43 H 0.96996 * 119.99885 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0869 0.0000 4 7 3.6013 0.6639 -0.0006 5 1 4.3832 1.2381 -0.0004 6 6 3.6169 -0.6994 0.0041 7 6 4.8478 -1.5688 0.0106 8 6 2.3409 -1.1356 -0.0007 9 6 1.8898 -2.5735 -0.0002 10 6 1.7359 -3.0602 -1.4425 11 6 1.2854 -4.4983 -1.4420 12 8 1.1047 -5.0768 -0.3915 13 7 1.0822 -5.1412 -2.6090 14 6 0.6437 -6.5390 -2.6085 15 6 0.4899 -7.0258 -4.0508 16 6 0.0326 -8.4859 -4.0503 17 6 -0.1195 -8.9651 -5.4709 18 1 0.0887 -8.2952 -6.2921 19 6 -0.5256 -10.2585 -5.7224 20 7 -0.7797 -11.0742 -4.7225 21 14 -0.7134 -10.8528 -7.4834 22 1 0.5911 -10.7436 -8.1845 23 1 -1.1574 -12.2699 -7.4829 24 1 -1.7227 -10.0176 -8.1827 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3634 -0.8897 -0.5143 28 1 1.9747 2.1151 0.0004 29 1 5.1489 -1.7800 -1.0155 30 1 5.6558 -1.0507 0.5271 31 1 4.6289 -2.5046 0.5250 32 1 0.9323 -2.6537 0.5145 33 1 2.6306 -3.1865 0.5131 34 1 2.6934 -2.9800 -1.9572 35 1 0.9950 -2.4471 -1.9557 36 1 1.2264 -4.6785 -3.4492 37 1 1.3848 -7.1522 -2.0955 38 1 -0.3136 -6.6193 -2.0935 39 1 -0.2509 -6.4129 -4.5641 40 1 1.4475 -6.9456 -4.5654 41 1 0.7737 -9.0986 -3.5371 42 1 -0.9249 -8.5665 -3.5356 43 1 -1.0650 -11.9842 -4.8995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177594072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:11 Heat of formation + Delta-G solvation = -33.509632 kcal Electronic energy + Delta-G solvation = -20532.482935 eV Core-core repulsion = 17383.818690 eV Total energy + Delta-G solvation = -3148.664245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47996 -39.36849 -35.43848 -34.17221 -33.25810 -32.81896 -31.30383 -30.37545 -27.99053 -26.73209 -25.56388 -24.16960 -22.59887 -20.65218 -19.80967 -19.68344 -18.79205 -17.53522 -16.67090 -16.32637 -15.68468 -15.38473 -14.85190 -14.65450 -14.43357 -13.95961 -13.57499 -13.39976 -13.28679 -12.89799 -12.72234 -12.55372 -12.43803 -12.26200 -12.19505 -11.77102 -11.75259 -11.60869 -11.43484 -10.86717 -10.78816 -10.69260 -10.60631 -9.83070 -9.79131 -9.32316 -9.10266 -8.68076 -8.58550 -8.35201 -8.05197 -5.99932 -4.03076 2.04000 2.69615 2.91901 3.09960 3.33222 3.37880 3.39676 3.58729 4.45787 4.71352 4.85611 4.91069 4.95992 5.11233 5.17579 5.24982 5.31248 5.35581 5.36003 5.55877 5.63104 5.65270 5.66651 5.75790 5.82223 5.83545 5.96890 6.19175 6.21203 6.23479 6.30083 6.57382 6.64382 6.87533 6.89732 7.00481 7.04726 7.40775 7.65559 7.78849 7.82173 7.99000 8.39855 8.52364 9.03478 9.60895 11.11343 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035863 B = 0.002338 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.564053 B =11972.538906 C =12064.389480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.159 4.159 3 C -0.022 4.022 4 N -0.560 5.560 5 H 0.411 0.589 6 C 0.017 3.983 7 C -0.086 4.086 8 C -0.157 4.157 9 C -0.028 4.028 10 C -0.132 4.132 11 C 0.505 3.495 12 O -0.547 6.547 13 N -0.729 5.729 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.160 0.840 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.174 25.912 8.822 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.166 4.166 3 C -0.152 4.152 4 N -0.155 5.155 5 H 0.247 0.753 6 C -0.096 4.096 7 C -0.144 4.144 8 C -0.164 4.164 9 C -0.067 4.067 10 C -0.172 4.172 11 C 0.291 3.709 12 O -0.425 6.425 13 N -0.380 5.380 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.177 0.823 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.231 0.769 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.102 25.381 9.621 28.629 hybrid contribution 0.295 0.199 -1.458 1.501 sum 9.397 25.580 8.163 28.448 Atomic orbital electron populations 1.20129 0.90359 1.01903 1.01465 1.19442 0.95494 0.92119 1.09539 1.21543 0.82683 0.98899 1.12039 1.41801 1.07748 1.06352 1.59576 0.75285 1.20168 0.96402 0.82829 1.10156 1.20327 0.92900 0.98550 1.02619 1.19184 0.91453 0.94951 1.10773 1.19615 1.02343 0.90093 0.94634 1.21636 1.03031 0.92775 0.99768 1.20778 0.77352 0.88882 0.83867 1.90689 1.51669 1.68788 1.31337 1.46259 1.68990 1.14444 1.08300 1.21615 0.99702 0.79819 0.99565 1.21881 1.00791 1.00775 0.92406 1.19027 0.96728 0.88375 0.97265 1.21173 1.45677 0.96914 0.92329 0.92717 1.25035 0.95460 0.96925 0.97073 1.69958 1.46197 1.06443 1.30704 0.86639 0.78489 0.77712 0.85026 1.20261 1.21281 1.20247 0.92192 0.92448 0.91848 0.82252 0.91106 0.92105 0.89915 0.90719 0.90994 0.89373 0.89163 0.76892 0.91911 0.91887 0.92777 0.92800 0.96298 0.96291 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.13 36.01 0.36 -0.34 16 2 C -0.16 -1.59 6.14 -104.82 -0.64 -2.23 16 3 C -0.02 -0.18 11.85 -16.75 -0.20 -0.38 16 4 N -0.56 -4.14 6.07 -9.12 -0.06 -4.19 16 5 H 0.41 1.78 8.96 -40.82 -0.37 1.42 16 6 C 0.02 0.15 7.16 -81.79 -0.59 -0.43 16 7 C -0.09 -0.61 10.21 36.00 0.37 -0.24 16 8 C -0.16 -1.67 5.39 -104.82 -0.57 -2.23 16 9 C -0.03 -0.33 4.53 -27.89 -0.13 -0.45 16 10 C -0.13 -1.44 5.68 -27.88 -0.16 -1.60 16 11 C 0.50 7.51 7.83 -10.98 -0.09 7.43 16 12 O -0.55 -10.37 15.98 5.56 0.09 -10.28 16 13 N -0.73 -10.63 5.56 -60.30 -0.33 -10.97 16 14 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 15 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 18 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 28 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.62 7.13 -51.93 -0.37 0.25 16 32 H 0.07 0.94 7.99 -51.93 -0.41 0.53 16 33 H 0.07 0.86 7.08 -51.93 -0.37 0.50 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 4.66 8.47 -40.82 -0.35 4.31 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -34.00 360.64 -8.82 -42.81 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.32 Total: 0.87 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.34 Total: -13.98 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.35 Total: -41.44 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.00 -8.82 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177594072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.302 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds