Wall clock time and date at job start Tue Mar 31 2020 00:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34847 * 126.29299 * 2 1 4 4 N 1.36338 * 108.21916 * 180.02562 * 3 2 1 5 5 H 0.97008 * 125.63248 * 180.02562 * 4 3 2 6 6 C 1.36335 * 108.73049 * 359.77633 * 4 3 2 7 7 C 1.50698 * 125.89553 * 180.25660 * 6 4 3 8 8 C 1.34853 * 108.21734 * 0.37000 * 6 4 3 9 9 C 1.50697 * 126.29349 * 179.89627 * 8 6 4 10 10 C 1.52997 * 109.47466 * 269.69006 * 9 8 6 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47452 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47088 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00531 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99882 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99989 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47107 * 59.99828 * 21 19 17 23 23 H 1.48500 * 109.47454 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99653 * 21 19 17 25 25 H 1.09003 * 109.46871 * 269.97484 * 1 2 3 26 26 H 1.09004 * 109.46966 * 29.97383 * 1 2 3 27 27 H 1.08999 * 109.47291 * 149.97206 * 1 2 3 28 28 H 1.08002 * 125.88645 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46977 * 270.13673 * 7 6 4 30 30 H 1.09000 * 109.46963 * 30.12858 * 7 6 4 31 31 H 1.08996 * 109.47163 * 150.13018 * 7 6 4 32 32 H 1.09002 * 109.47120 * 149.68759 * 9 8 6 33 33 H 1.08998 * 109.46862 * 29.69561 * 9 8 6 34 34 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 35 35 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 36 36 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 37 37 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 38 38 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 39 39 H 1.09001 * 109.47289 * 299.99909 * 15 14 13 40 40 H 1.09002 * 109.47153 * 59.99993 * 15 14 13 41 41 H 1.08998 * 109.47061 * 300.00668 * 16 15 14 42 42 H 1.09002 * 109.46668 * 60.00355 * 16 15 14 43 43 H 0.96996 * 119.99885 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0869 0.0000 4 7 3.6013 0.6639 -0.0006 5 1 4.3832 1.2381 -0.0004 6 6 3.6169 -0.6994 0.0041 7 6 4.8478 -1.5688 0.0106 8 6 2.3409 -1.1356 -0.0007 9 6 1.8898 -2.5735 -0.0002 10 6 1.7359 -3.0602 -1.4425 11 6 1.2854 -4.4983 -1.4420 12 8 1.1047 -5.0768 -0.3915 13 7 1.0822 -5.1412 -2.6090 14 6 0.6437 -6.5390 -2.6085 15 6 0.4899 -7.0258 -4.0508 16 6 0.0326 -8.4859 -4.0503 17 6 -0.1195 -8.9651 -5.4709 18 1 0.0887 -8.2952 -6.2921 19 6 -0.5256 -10.2585 -5.7224 20 7 -0.7797 -11.0742 -4.7225 21 14 -0.7134 -10.8528 -7.4834 22 1 0.5911 -10.7436 -8.1845 23 1 -1.1574 -12.2699 -7.4829 24 1 -1.7227 -10.0176 -8.1827 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3634 -0.8897 -0.5143 28 1 1.9747 2.1151 0.0004 29 1 5.1489 -1.7800 -1.0155 30 1 5.6558 -1.0507 0.5271 31 1 4.6289 -2.5046 0.5250 32 1 0.9323 -2.6537 0.5145 33 1 2.6306 -3.1865 0.5131 34 1 2.6934 -2.9800 -1.9572 35 1 0.9950 -2.4471 -1.9557 36 1 1.2264 -4.6785 -3.4492 37 1 1.3848 -7.1522 -2.0955 38 1 -0.3136 -6.6193 -2.0935 39 1 -0.2509 -6.4129 -4.5641 40 1 1.4475 -6.9456 -4.5654 41 1 0.7737 -9.0986 -3.5371 42 1 -0.9249 -8.5665 -3.5356 43 1 -1.0650 -11.9842 -4.8995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177594072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:10 Heat of formation + Delta-G solvation = -54.986030 kcal Electronic energy + Delta-G solvation = -20533.414221 eV Core-core repulsion = 17383.818690 eV Total energy + Delta-G solvation = -3149.595531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.12697 -40.63838 -37.00018 -35.17403 -35.05074 -33.47153 -33.01878 -31.24067 -28.99702 -28.19610 -26.34604 -25.40684 -24.10786 -22.29020 -21.09819 -20.41027 -19.52826 -18.54384 -18.15944 -17.70608 -16.89487 -16.80827 -16.40085 -15.92877 -15.57430 -15.00377 -14.74926 -14.25061 -14.07175 -13.93478 -13.84520 -13.78122 -13.43125 -13.33811 -13.23840 -13.06779 -12.96968 -12.70207 -12.54339 -12.44317 -12.38841 -12.22257 -11.65968 -11.62553 -11.57231 -11.24847 -10.78757 -10.54346 -10.04448 -9.28197 -8.70035 -8.18783 -6.30614 1.40298 1.42088 1.45396 1.53236 1.70941 1.95589 2.34189 2.44631 2.58116 3.14653 3.86152 4.08862 4.18502 4.20412 4.23777 4.26758 4.37417 4.51571 4.55130 4.56636 4.70374 4.76386 4.80249 4.87045 4.95375 4.98950 5.00484 5.04134 5.11149 5.17752 5.30572 5.31643 5.47937 5.50833 5.55424 5.60627 5.71186 5.84581 6.18742 6.22700 6.32786 6.64770 6.86864 6.90552 7.33549 7.39000 8.93193 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035863 B = 0.002338 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.564053 B =11972.538906 C =12064.389480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.188 4.188 3 C -0.016 4.016 4 N -0.550 5.550 5 H 0.427 0.573 6 C 0.013 3.987 7 C -0.086 4.086 8 C -0.183 4.183 9 C -0.022 4.022 10 C -0.116 4.116 11 C 0.504 3.496 12 O -0.592 6.592 13 N -0.718 5.718 14 C 0.129 3.871 15 C -0.101 4.101 16 C 0.023 3.977 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.187 0.813 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.416 0.584 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.068 0.932 41 H -0.009 1.009 42 H -0.009 1.009 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.306 28.330 6.996 30.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.194 4.194 3 C -0.146 4.146 4 N -0.146 5.146 5 H 0.266 0.734 6 C -0.100 4.100 7 C -0.143 4.143 8 C -0.190 4.190 9 C -0.060 4.060 10 C -0.156 4.156 11 C 0.293 3.707 12 O -0.473 6.473 13 N -0.370 5.370 14 C 0.004 3.996 15 C -0.139 4.139 16 C -0.015 4.015 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.190 1.190 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.204 0.796 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.252 0.748 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.261 27.853 7.766 30.682 hybrid contribution -0.044 -0.523 -0.819 0.973 sum 10.217 27.330 6.947 29.993 Atomic orbital electron populations 1.20110 0.90093 1.02108 1.01340 1.19696 0.96129 0.92644 1.10977 1.21955 0.82631 0.99702 1.10353 1.41834 1.08292 1.05995 1.58489 0.73437 1.20411 0.96493 0.83760 1.09354 1.20367 0.92660 0.98004 1.03313 1.19186 0.92577 0.94381 1.12828 1.19462 1.00908 0.91075 0.94585 1.21600 1.04459 0.89571 0.99976 1.21507 0.76131 0.90183 0.82925 1.90676 1.53560 1.70073 1.32987 1.46051 1.68549 1.12958 1.09412 1.21203 0.98581 0.81760 0.98026 1.21591 1.01605 0.97000 0.93691 1.18948 0.94676 0.91913 0.95931 1.21655 1.45346 0.97467 0.93502 0.91496 1.26051 0.95007 0.97227 1.01932 1.70111 1.47246 1.06866 1.33367 0.85451 0.79078 0.77059 0.79146 1.18967 1.21180 1.18989 0.92529 0.90926 0.92914 0.79582 0.90207 0.90327 0.90866 0.92812 0.92188 0.86995 0.87422 0.74765 0.93434 0.93555 0.91401 0.91321 0.99026 0.99091 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.13 71.24 0.72 -0.60 16 2 C -0.19 -3.51 6.14 -19.99 -0.12 -3.64 16 3 C -0.02 -0.22 11.85 83.21 0.99 0.77 16 4 N -0.55 -6.72 6.07 -182.78 -1.11 -7.83 16 5 H 0.43 2.42 8.96 -92.70 -0.83 1.59 16 6 C 0.01 0.22 7.16 41.08 0.29 0.51 16 7 C -0.09 -1.05 10.21 71.24 0.73 -0.32 16 8 C -0.18 -3.72 5.39 -19.99 -0.11 -3.83 16 9 C -0.02 -0.50 4.53 29.85 0.14 -0.37 16 10 C -0.12 -2.39 5.68 29.85 0.17 -2.22 16 11 C 0.50 14.82 7.83 87.66 0.69 15.50 16 12 O -0.59 -23.07 15.98 -3.03 -0.05 -23.12 16 13 N -0.72 -20.18 5.56 -463.06 -2.57 -22.75 16 14 C 0.13 4.68 5.67 86.38 0.49 5.17 16 15 C -0.10 -3.95 5.27 30.60 0.16 -3.79 16 16 C 0.02 1.22 4.97 29.85 0.15 1.36 16 17 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 18 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 20 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 21 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.96 8.03 -2.39 -0.02 0.94 16 28 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 1.04 7.13 -2.39 -0.02 1.02 16 32 H 0.05 1.43 7.99 -2.39 -0.02 1.41 16 33 H 0.06 1.48 7.08 -2.39 -0.02 1.47 16 34 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.42 8.74 8.47 -92.71 -0.79 7.96 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.87 360.64 2.95 -71.92 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -0.62 Total: 14.70 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 4.98 Total: -21.51 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -3.40 Total: -88.01 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -74.87 2.95 -71.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177594072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.936 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds