Wall clock time and date at job start Tue Mar 31 2020 00:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33402 * 119.99753 * 2 1 4 4 C 1.50698 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.46351 * 119.99606 * 179.97438 * 3 2 1 6 6 C 1.35173 * 119.99859 * 180.02562 * 5 3 2 7 7 C 1.46262 * 120.00021 * 180.02562 * 6 5 3 8 8 O 1.21717 * 119.99782 * 354.65279 * 7 6 5 9 9 N 1.34776 * 119.99738 * 174.65747 * 7 6 5 10 10 C 1.47089 * 120.87843 * 184.72079 * 9 7 6 11 11 C 1.53700 * 108.27524 * 128.75086 * 10 9 7 12 12 N 1.46896 * 109.25415 * 54.08415 * 11 10 9 13 13 C 1.46902 * 111.00115 * 172.60191 * 12 11 10 14 14 C 1.50690 * 109.47258 * 294.30543 * 13 12 11 15 15 H 1.07999 * 120.00310 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99970 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00070 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99921 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47439 * 89.99689 * 18 16 14 20 20 H 1.48510 * 109.46987 * 209.99645 * 18 16 14 21 21 H 1.48495 * 109.47310 * 329.99573 * 18 16 14 22 22 C 1.46902 * 111.27263 * 296.75475 * 12 11 10 23 23 C 1.47075 * 120.88839 * 5.00072 * 9 7 6 24 24 H 1.08995 * 109.46839 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47091 * 299.99924 * 1 2 3 26 26 H 1.08991 * 109.46763 * 59.99876 * 1 2 3 27 27 H 1.08001 * 119.99924 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46748 * 269.99765 * 4 3 2 29 29 H 1.08995 * 109.47184 * 29.99699 * 4 3 2 30 30 H 1.09000 * 109.47149 * 149.99817 * 4 3 2 31 31 H 1.07992 * 119.99804 * 0.02562 * 5 3 2 32 32 H 1.08006 * 119.99921 * 359.72506 * 6 5 3 33 33 H 1.08991 * 109.63172 * 248.52465 * 10 9 7 34 34 H 1.09007 * 109.62610 * 9.10572 * 10 9 7 35 35 H 1.08998 * 109.65113 * 294.08376 * 11 10 9 36 36 H 1.09000 * 109.41907 * 173.94617 * 11 10 9 37 37 H 1.09005 * 109.46512 * 54.30794 * 13 12 11 38 38 H 1.09008 * 109.47093 * 174.30101 * 13 12 11 39 39 H 0.96998 * 120.00122 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.48872 * 303.14487 * 22 12 11 41 41 H 1.09002 * 109.51555 * 183.07680 * 22 12 11 42 42 H 1.09006 * 109.62111 * 350.89408 * 23 9 7 43 43 H 1.08990 * 109.63136 * 111.47409 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1740 1.1553 0.0000 4 6 1.4206 2.4604 0.0006 5 6 3.6375 1.1553 0.0006 6 6 4.3134 2.3259 0.0011 7 6 5.7760 2.3259 0.0011 8 8 6.3846 1.2763 0.0989 9 7 6.4499 3.4881 -0.1071 10 6 7.9169 3.5032 -0.2128 11 6 8.3038 4.3619 -1.4274 12 7 7.6768 5.6847 -1.3049 13 6 8.1594 6.5950 -2.3520 14 6 9.6274 6.8653 -2.1453 15 1 10.1497 6.4070 -1.3185 16 6 10.3038 7.6976 -3.0118 17 7 9.6679 8.2553 -4.0189 18 14 12.1237 8.0321 -2.7560 19 1 12.9216 7.0223 -3.4970 20 1 12.4530 9.3898 -3.2596 21 1 12.4433 7.9502 -1.3082 22 6 6.2115 5.5843 -1.3289 23 6 5.7384 4.7753 -0.1164 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 2.0471 -0.9353 0.0004 28 1 1.2386 2.7753 -1.0269 29 1 0.4684 2.3300 0.5147 30 1 2.0098 3.2199 0.5144 31 1 4.1775 0.2200 0.0006 32 1 3.7734 3.2613 -0.0034 33 1 8.3449 3.9313 0.6935 34 1 8.2845 2.4861 -0.3498 35 1 7.9592 3.8795 -2.3421 36 1 9.3874 4.4747 -1.4611 37 1 8.0083 6.1369 -3.3295 38 1 7.6064 7.5331 -2.3010 39 1 10.1438 8.8406 -4.6287 40 1 5.8961 5.0848 -2.2449 41 1 5.7773 6.5834 -1.2913 42 1 4.6651 4.5998 -0.1895 43 1 5.9611 5.3234 0.7990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178507954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:00 Heat of formation + Delta-G solvation = -0.043233 kcal Electronic energy + Delta-G solvation = -21279.625105 eV Core-core repulsion = 18132.412072 eV Total energy + Delta-G solvation = -3147.213033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94353 -37.70357 -37.00589 -34.38458 -32.72330 -32.34921 -30.75856 -29.01356 -28.22146 -26.68172 -25.47956 -23.63433 -22.55012 -21.67750 -20.06461 -18.42352 -18.25887 -17.32733 -16.38581 -15.81692 -15.38094 -15.06182 -14.70501 -14.48986 -14.31677 -14.10857 -13.78103 -13.60822 -13.38722 -12.98964 -12.81621 -12.67293 -12.27623 -12.05240 -11.96391 -11.72931 -11.34383 -11.28238 -11.10821 -10.82771 -10.74617 -10.62896 -10.60722 -10.52821 -9.90065 -9.67188 -9.26194 -8.59789 -8.47948 -8.29357 -7.33286 -6.06717 -4.08492 0.64038 2.37478 3.18861 3.30161 3.36529 3.40712 3.47191 4.37916 4.39566 4.56399 4.72782 4.88170 4.93556 4.99888 5.05332 5.21700 5.28004 5.29331 5.40195 5.41545 5.50829 5.54193 5.57007 5.65022 5.70240 5.82861 5.89751 5.99034 6.04348 6.17035 6.20920 6.31709 6.42998 6.54129 6.57301 6.77094 7.21141 7.27244 7.60215 7.74446 8.00365 8.11339 8.32540 8.47208 8.98824 9.56119 11.04126 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038509 B = 0.002998 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.926282 B = 9338.065169 C = 9792.244237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.132 4.132 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.033 4.033 6 C -0.210 4.210 7 C 0.544 3.456 8 O -0.557 6.557 9 N -0.603 5.603 10 C 0.115 3.885 11 C 0.052 3.948 12 N -0.536 5.536 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.039 3.961 23 C 0.111 3.889 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.025 0.975 36 H 0.097 0.903 37 H -0.009 1.009 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.027 0.973 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.397 -11.785 8.099 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C -0.121 4.121 4 C -0.179 4.179 5 C -0.053 4.053 6 C -0.230 4.230 7 C 0.335 3.665 8 O -0.438 6.438 9 N -0.335 5.335 10 C -0.007 4.007 11 C -0.078 4.078 12 N -0.261 5.261 13 C 0.069 3.931 14 C -0.548 4.548 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.090 4.090 23 C -0.012 4.012 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.133 0.867 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.043 0.957 36 H 0.115 0.885 37 H 0.009 0.991 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.891 -11.972 8.442 22.358 hybrid contribution 0.793 0.113 -0.872 1.184 sum -16.098 -11.858 7.570 21.379 Atomic orbital electron populations 1.20888 0.92685 1.02505 1.02180 1.23521 0.96279 0.97244 0.98018 1.20552 0.92535 0.95835 1.03152 1.20891 0.99819 0.94697 1.02496 1.22410 0.92438 0.98586 0.91839 1.23160 0.93497 0.99405 1.06962 1.18309 0.88106 0.83331 0.76744 1.90772 1.70461 1.31168 1.51427 1.48116 1.08065 1.05906 1.71406 1.21953 0.78442 1.00914 0.99404 1.22428 1.01533 0.89153 0.94638 1.62083 1.02776 1.09770 1.51497 1.19725 0.96046 0.90558 0.86760 1.21143 0.93780 1.28037 1.11832 0.91779 1.24997 0.98639 0.95845 0.95122 1.69957 1.36372 1.31762 1.15681 0.86489 0.84908 0.77480 0.78501 1.20710 1.21251 1.19723 1.22405 0.91481 0.99571 0.95576 1.21990 0.95874 0.83452 0.99907 0.91898 0.91160 0.91236 0.86710 0.91026 0.91312 0.91405 0.85281 0.84988 0.90898 0.89434 0.95723 0.88488 0.99124 0.95029 0.92877 0.95471 0.90020 0.90023 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 8.92 36.01 0.32 -0.38 16 2 C -0.13 -1.01 9.98 -35.99 -0.36 -1.37 16 3 C -0.12 -1.08 5.98 -103.05 -0.62 -1.69 16 4 C -0.12 -0.89 9.04 36.00 0.33 -0.56 16 5 C -0.03 -0.37 9.37 -37.41 -0.35 -0.72 16 6 C -0.21 -2.57 8.68 -37.45 -0.33 -2.90 16 7 C 0.54 8.68 7.62 -13.04 -0.10 8.58 16 8 O -0.56 -10.59 15.72 5.17 0.08 -10.51 16 9 N -0.60 -9.54 3.00 -173.87 -0.52 -10.06 16 10 C 0.12 1.96 6.61 -3.36 -0.02 1.93 16 11 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 12 N -0.54 -11.21 4.62 -235.46 -1.09 -12.30 16 13 C 0.19 4.94 4.72 -4.98 -0.02 4.91 16 14 C -0.51 -14.02 8.41 -34.44 -0.29 -14.31 16 15 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 18 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 23 C 0.11 1.52 6.51 -3.60 -0.02 1.50 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.35 7.41 -51.93 -0.38 -0.03 16 26 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 27 H 0.11 0.82 8.05 -52.49 -0.42 0.40 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.41 6.50 -51.93 -0.34 0.07 16 30 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 31 H 0.13 1.55 7.53 -52.49 -0.40 1.16 16 32 H 0.13 1.32 4.03 -52.48 -0.21 1.10 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.49 7.09 -51.93 -0.37 1.13 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 37 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 38 H 0.03 0.85 7.97 -51.92 -0.41 0.44 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16 42 H 0.08 0.87 5.37 -51.93 -0.28 0.59 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -31.88 345.44 -9.00 -40.88 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.80 Total: -2.02 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.60 Total: -1.93 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.87 Total: -48.02 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.88 -9.00 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178507954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.839 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds