Wall clock time and date at job start Tue Mar 31 2020 00:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33402 * 119.99753 * 2 1 4 4 C 1.50698 * 120.00296 * 0.02562 * 3 2 1 5 5 C 1.46351 * 119.99606 * 179.97438 * 3 2 1 6 6 C 1.35173 * 119.99859 * 180.02562 * 5 3 2 7 7 C 1.46262 * 120.00021 * 180.02562 * 6 5 3 8 8 O 1.21717 * 119.99782 * 354.65279 * 7 6 5 9 9 N 1.34776 * 119.99738 * 174.65747 * 7 6 5 10 10 C 1.47089 * 120.87843 * 184.72079 * 9 7 6 11 11 C 1.53700 * 108.27524 * 128.75086 * 10 9 7 12 12 N 1.46896 * 109.25415 * 54.08415 * 11 10 9 13 13 C 1.46902 * 111.00115 * 172.60191 * 12 11 10 14 14 C 1.50690 * 109.47258 * 294.30543 * 13 12 11 15 15 H 1.07999 * 120.00310 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99970 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00070 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99921 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47439 * 89.99689 * 18 16 14 20 20 H 1.48510 * 109.46987 * 209.99645 * 18 16 14 21 21 H 1.48495 * 109.47310 * 329.99573 * 18 16 14 22 22 C 1.46902 * 111.27263 * 296.75475 * 12 11 10 23 23 C 1.47075 * 120.88839 * 5.00072 * 9 7 6 24 24 H 1.08995 * 109.46839 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47091 * 299.99924 * 1 2 3 26 26 H 1.08991 * 109.46763 * 59.99876 * 1 2 3 27 27 H 1.08001 * 119.99924 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46748 * 269.99765 * 4 3 2 29 29 H 1.08995 * 109.47184 * 29.99699 * 4 3 2 30 30 H 1.09000 * 109.47149 * 149.99817 * 4 3 2 31 31 H 1.07992 * 119.99804 * 0.02562 * 5 3 2 32 32 H 1.08006 * 119.99921 * 359.72506 * 6 5 3 33 33 H 1.08991 * 109.63172 * 248.52465 * 10 9 7 34 34 H 1.09007 * 109.62610 * 9.10572 * 10 9 7 35 35 H 1.08998 * 109.65113 * 294.08376 * 11 10 9 36 36 H 1.09000 * 109.41907 * 173.94617 * 11 10 9 37 37 H 1.09005 * 109.46512 * 54.30794 * 13 12 11 38 38 H 1.09008 * 109.47093 * 174.30101 * 13 12 11 39 39 H 0.96998 * 120.00122 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.48872 * 303.14487 * 22 12 11 41 41 H 1.09002 * 109.51555 * 183.07680 * 22 12 11 42 42 H 1.09006 * 109.62111 * 350.89408 * 23 9 7 43 43 H 1.08990 * 109.63136 * 111.47409 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1740 1.1553 0.0000 4 6 1.4206 2.4604 0.0006 5 6 3.6375 1.1553 0.0006 6 6 4.3134 2.3259 0.0011 7 6 5.7760 2.3259 0.0011 8 8 6.3846 1.2763 0.0989 9 7 6.4499 3.4881 -0.1071 10 6 7.9169 3.5032 -0.2128 11 6 8.3038 4.3619 -1.4274 12 7 7.6768 5.6847 -1.3049 13 6 8.1594 6.5950 -2.3520 14 6 9.6274 6.8653 -2.1453 15 1 10.1497 6.4070 -1.3185 16 6 10.3038 7.6976 -3.0118 17 7 9.6679 8.2553 -4.0189 18 14 12.1237 8.0321 -2.7560 19 1 12.9216 7.0223 -3.4970 20 1 12.4530 9.3898 -3.2596 21 1 12.4433 7.9502 -1.3082 22 6 6.2115 5.5843 -1.3289 23 6 5.7384 4.7753 -0.1164 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 2.0471 -0.9353 0.0004 28 1 1.2386 2.7753 -1.0269 29 1 0.4684 2.3300 0.5147 30 1 2.0098 3.2199 0.5144 31 1 4.1775 0.2200 0.0006 32 1 3.7734 3.2613 -0.0034 33 1 8.3449 3.9313 0.6935 34 1 8.2845 2.4861 -0.3498 35 1 7.9592 3.8795 -2.3421 36 1 9.3874 4.4747 -1.4611 37 1 8.0083 6.1369 -3.3295 38 1 7.6064 7.5331 -2.3010 39 1 10.1438 8.8406 -4.6287 40 1 5.8961 5.0848 -2.2449 41 1 5.7773 6.5834 -1.2913 42 1 4.6651 4.5998 -0.1895 43 1 5.9611 5.3234 0.7990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178507954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:59 Heat of formation + Delta-G solvation = -20.006134 kcal Electronic energy + Delta-G solvation = -21280.490761 eV Core-core repulsion = 18132.412072 eV Total energy + Delta-G solvation = -3148.078689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21973 -39.07474 -37.81511 -35.99367 -34.41005 -33.52071 -32.07010 -30.20955 -29.36774 -27.61556 -26.99680 -24.94048 -24.05186 -23.17405 -21.40530 -19.58035 -19.13255 -18.49287 -18.26936 -17.09206 -16.69872 -16.32215 -16.14975 -16.00734 -15.49675 -15.28600 -15.04869 -14.81427 -14.39644 -14.29248 -14.02205 -13.62370 -13.40914 -13.20283 -13.03825 -12.77811 -12.71922 -12.58314 -12.46927 -12.35231 -12.23233 -12.19863 -11.92737 -11.75273 -11.40836 -11.34588 -10.88317 -10.62691 -9.82478 -9.18325 -9.04552 -8.21726 -6.31544 -0.20959 1.41845 1.42402 1.53698 1.54272 1.97559 2.39143 2.41070 3.10491 3.21282 3.49304 3.85585 3.92271 4.01750 4.09435 4.15507 4.23489 4.33643 4.41997 4.45952 4.53378 4.59643 4.72423 4.80407 4.83376 4.90676 4.91775 4.96062 5.00421 5.04331 5.14833 5.19897 5.22193 5.24515 5.34775 5.50132 5.63233 5.67708 5.90385 6.02075 6.19866 6.42594 6.57604 6.83878 7.10042 7.38201 8.89407 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038509 B = 0.002998 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.926282 B = 9338.065169 C = 9792.244237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 C -0.144 4.144 4 C -0.122 4.122 5 C -0.016 4.016 6 C -0.229 4.229 7 C 0.540 3.460 8 O -0.598 6.598 9 N -0.608 5.608 10 C 0.126 3.874 11 C 0.058 3.942 12 N -0.540 5.540 13 C 0.209 3.791 14 C -0.524 4.524 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.264 1.264 22 C 0.036 3.964 23 C 0.119 3.881 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.158 0.842 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.009 0.991 36 H 0.080 0.920 37 H -0.042 1.042 38 H 0.013 0.987 39 H 0.265 0.735 40 H 0.019 0.981 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.043 -12.148 9.416 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.134 4.134 3 C -0.144 4.144 4 C -0.178 4.178 5 C -0.036 4.036 6 C -0.249 4.249 7 C 0.334 3.666 8 O -0.482 6.482 9 N -0.339 5.339 10 C 0.003 3.997 11 C -0.071 4.071 12 N -0.265 5.265 13 C 0.083 3.917 14 C -0.562 4.562 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.793 3.207 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.093 4.093 23 C -0.003 4.003 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.134 0.866 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.176 0.824 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.028 0.972 36 H 0.098 0.902 37 H -0.024 1.024 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.110 0.890 42 H 0.139 0.861 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.564 -12.335 9.776 24.338 hybrid contribution 1.169 0.081 -1.297 1.748 sum -17.395 -12.254 8.479 22.905 Atomic orbital electron populations 1.20967 0.90871 1.03560 1.02974 1.23859 0.97705 0.96954 0.94871 1.20617 0.91197 0.97307 1.05325 1.20920 1.00261 0.93655 1.02959 1.22556 0.93909 0.97726 0.89366 1.23046 0.91094 1.00895 1.09859 1.18906 0.89587 0.82519 0.75600 1.90745 1.71558 1.32439 1.53415 1.48201 1.07480 1.06867 1.71385 1.21714 0.79881 0.99966 0.98154 1.22335 1.00484 0.88851 0.95438 1.62008 1.05472 1.09752 1.49237 1.19374 0.95367 0.90443 0.86517 1.21464 0.94911 1.28008 1.11856 0.91726 1.25902 1.03438 0.95554 0.94726 1.70078 1.38329 1.32448 1.16591 0.85392 0.79068 0.77414 0.78809 1.20071 1.20732 1.18781 1.22562 0.88775 1.00932 0.97041 1.22098 0.97740 0.81968 0.98501 0.90860 0.90050 0.90476 0.86620 0.90735 0.89846 0.91177 0.86755 0.82439 0.90103 0.89768 0.97242 0.90168 1.02424 0.96941 0.92671 0.96233 0.88968 0.86101 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 8.92 71.24 0.64 -0.38 16 2 C -0.12 -1.48 9.98 24.59 0.25 -1.23 16 3 C -0.14 -2.24 5.98 -18.85 -0.11 -2.35 16 4 C -0.12 -1.39 9.04 71.24 0.64 -0.74 16 5 C -0.02 -0.33 9.37 23.68 0.22 -0.11 16 6 C -0.23 -5.24 8.68 23.65 0.21 -5.03 16 7 C 0.54 16.90 7.62 86.33 0.66 17.56 16 8 O -0.60 -22.95 15.72 -4.40 -0.07 -23.02 16 9 N -0.61 -18.70 3.00 -822.22 -2.47 -21.17 16 10 C 0.13 4.28 6.61 86.50 0.57 4.86 16 11 C 0.06 2.33 5.47 86.54 0.47 2.81 16 12 N -0.54 -22.91 4.62 -898.87 -4.15 -27.06 16 13 C 0.21 11.02 4.72 85.55 0.40 11.42 16 14 C -0.52 -29.43 8.41 25.60 0.22 -29.21 16 15 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16 16 C 0.00 0.11 5.46 84.66 0.46 0.57 16 17 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 18 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.04 1.19 5.62 86.38 0.49 1.68 16 23 C 0.12 3.02 6.51 86.35 0.56 3.58 16 24 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.08 0.53 7.41 -2.38 -0.02 0.51 16 26 H 0.08 0.56 8.10 -2.39 -0.02 0.54 16 27 H 0.12 1.43 8.05 -2.91 -0.02 1.40 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.69 6.50 -2.39 -0.02 0.67 16 30 H 0.07 0.76 6.43 -2.39 -0.02 0.75 16 31 H 0.11 2.73 7.53 -2.91 -0.02 2.70 16 32 H 0.16 2.66 4.03 -2.91 -0.01 2.65 16 33 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.08 2.93 7.09 -2.38 -0.02 2.91 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.08 3.45 6.67 -2.39 -0.02 3.43 16 37 H -0.04 -2.44 8.12 -2.38 -0.02 -2.46 16 38 H 0.01 0.70 7.97 -2.38 -0.02 0.68 16 39 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 2.87 7.99 -2.39 -0.02 2.85 16 42 H 0.12 2.15 5.37 -2.38 -0.01 2.14 16 43 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -70.40 345.44 2.28 -68.12 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.98 Total: 9.19 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.67 Total: 3.42 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -6.34 Total: -103.88 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.07 Total: -23.02 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.40 2.28 -68.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178507954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.117 kcal (2) G-P(sol) polarization free energy of solvation -70.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds