Wall clock time and date at job start Tue Mar 31 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99713 * 2 1 4 4 C 1.53000 * 109.46745 * 124.99903 * 3 2 1 5 5 C 1.53003 * 109.46702 * 174.92237 * 4 3 2 6 6 C 1.50699 * 115.56704 * 39.34765 * 5 4 3 7 7 O 1.21281 * 119.99985 * 260.46649 * 6 5 4 8 8 N 1.34776 * 119.99854 * 80.46174 * 6 5 4 9 9 C 1.47021 * 125.64736 * 354.96136 * 8 6 5 10 10 C 1.54330 * 107.26907 * 181.02060 * 9 8 6 11 11 C 1.55159 * 102.93949 * 22.19590 * 10 9 8 12 12 H 1.08995 * 111.00730 * 82.57690 * 11 10 9 13 13 N 1.46501 * 111.00033 * 206.38323 * 11 10 9 14 14 C 1.36939 * 120.00210 * 273.54965 * 13 11 10 15 15 H 1.07996 * 119.99800 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00196 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00297 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99855 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46814 * 90.00405 * 18 16 14 20 20 H 1.48500 * 109.47107 * 210.00371 * 18 16 14 21 21 H 1.48501 * 109.47095 * 330.00662 * 18 16 14 22 22 C 1.47426 * 125.64789 * 174.65428 * 8 6 5 23 23 C 1.53001 * 117.49708 * 185.03733 * 5 4 3 24 24 C 1.53000 * 60.03376 * 107.49828 * 23 5 4 25 25 H 1.08001 * 120.00096 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.99982 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99788 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47346 * 4.99665 * 3 2 1 29 29 H 1.09001 * 109.46850 * 244.99623 * 3 2 1 30 30 H 1.09001 * 109.47490 * 54.92151 * 4 3 2 31 31 H 1.08997 * 109.47292 * 294.91952 * 4 3 2 32 32 H 1.09000 * 109.88291 * 300.44043 * 9 8 6 33 33 H 1.08994 * 109.88042 * 61.60671 * 9 8 6 34 34 H 1.09005 * 110.71537 * 140.55646 * 10 9 8 35 35 H 1.08994 * 110.72242 * 263.65250 * 10 9 8 36 36 H 0.97003 * 119.99902 * 93.54378 * 13 11 10 37 37 H 0.97006 * 120.00278 * 179.97438 * 17 16 14 38 38 H 1.08999 * 110.36180 * 274.74745 * 22 8 6 39 39 H 1.08996 * 110.36429 * 37.06689 * 22 8 6 40 40 H 1.09000 * 117.49804 * 359.97438 * 23 5 4 41 41 H 1.08995 * 117.49886 * 215.00008 * 23 5 4 42 42 H 1.09004 * 117.49948 * 107.47756 * 24 23 5 43 43 H 1.09003 * 117.50111 * 252.47769 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8887 2.6008 1.1100 6 6 3.1653 3.8483 0.6725 7 8 3.2534 4.2293 -0.4755 8 7 2.4204 4.5404 1.5571 9 6 2.1428 4.1382 2.9437 10 6 1.2322 5.2204 3.5611 11 6 0.5859 5.8827 2.3157 12 1 -0.2693 5.3049 1.9654 13 7 0.2002 7.2675 2.5981 14 6 -1.0211 7.5380 3.1553 15 1 -1.7001 6.7306 3.3862 16 6 -1.3868 8.8502 3.4225 17 7 -2.5608 9.1103 3.9576 18 14 -0.2125 10.2469 3.0225 19 1 -0.4614 10.7214 1.6375 20 1 -0.4303 11.3649 3.9754 21 1 1.1874 9.7647 3.1365 22 6 1.7541 5.8295 1.2964 23 6 5.0077 2.7581 2.1415 24 6 5.3507 2.4454 0.6836 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.6817 0.4567 1.1412 31 1 2.4721 1.3265 2.1150 32 1 1.6337 3.1744 2.9552 33 1 3.0751 4.0740 3.5047 34 1 0.4705 4.7672 4.1958 35 1 1.8208 5.9443 4.1245 36 1 0.8100 7.9928 2.3905 37 1 -2.8162 10.0272 4.1446 38 1 2.4458 6.6548 1.4651 39 1 1.3693 5.8583 0.2771 40 1 5.1353 1.9587 2.8715 41 1 5.2203 3.7637 2.5040 42 1 5.7886 3.2456 0.0868 43 1 5.7046 1.4403 0.4542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185439403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:53 Heat of formation + Delta-G solvation = 20.548878 kcal Electronic energy + Delta-G solvation = -22053.817334 eV Core-core repulsion = 18907.497242 eV Total energy + Delta-G solvation = -3146.320092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41990 -38.00384 -36.72416 -35.20177 -34.25650 -31.61506 -30.40041 -29.83729 -28.24651 -24.92817 -23.87167 -22.94045 -22.54013 -21.58041 -20.22836 -19.89813 -18.55583 -17.73381 -16.69701 -16.22400 -15.68007 -15.51524 -15.24786 -14.36069 -14.17635 -13.82508 -13.62680 -13.54921 -13.18635 -12.88292 -12.65846 -12.63035 -12.13557 -12.07547 -11.85860 -11.77487 -11.47705 -11.39182 -11.21746 -10.92257 -10.72569 -10.57641 -10.47546 -10.23612 -10.08971 -9.68678 -9.63868 -9.42559 -9.00694 -8.48611 -7.37890 -5.84268 -3.21967 2.13939 2.65762 2.97293 3.33627 3.36999 3.42174 3.49081 4.27317 4.45836 4.52908 4.60577 4.68508 4.84302 4.92824 5.05231 5.15296 5.20471 5.23550 5.35585 5.38569 5.39662 5.45788 5.54597 5.59373 5.63999 5.73075 5.76061 5.85105 5.86461 5.87106 5.92209 6.05896 6.11330 6.25813 6.45926 6.48937 6.51710 6.64081 6.77590 7.64804 7.89646 8.24777 8.34089 9.10785 9.83186 10.01367 11.33478 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.004245 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.844838 B = 6594.160143 C = 7256.312173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C -0.096 4.096 4 C -0.067 4.067 5 C -0.150 4.150 6 C 0.565 3.435 7 O -0.542 6.542 8 N -0.608 5.608 9 C 0.103 3.897 10 C -0.154 4.154 11 C 0.178 3.822 12 H 0.072 0.928 13 N -0.739 5.739 14 C -0.249 4.249 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.930 5.930 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.277 1.277 22 C 0.095 3.905 23 C -0.163 4.163 24 C -0.146 4.146 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.087 -17.865 -3.491 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.173 4.173 3 C -0.133 4.133 4 C -0.104 4.104 5 C -0.153 4.153 6 C 0.353 3.647 7 O -0.419 6.419 8 N -0.341 5.341 9 C -0.020 4.020 10 C -0.195 4.195 11 C 0.066 3.934 12 H 0.090 0.910 13 N -0.381 5.381 14 C -0.378 4.378 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.577 5.577 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.028 4.028 23 C -0.200 4.200 24 C -0.183 4.183 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.908 -17.679 -4.058 22.857 hybrid contribution 0.722 1.090 -0.061 1.309 sum 14.630 -16.589 -4.120 22.499 Atomic orbital electron populations 1.23914 0.96038 1.01976 1.00975 1.22924 0.96030 0.98167 1.00135 1.20771 0.98123 0.95501 0.98918 1.21011 0.96712 0.93700 0.99012 1.21443 0.91330 0.95542 1.07031 1.19085 0.78246 0.83089 0.84274 1.90695 1.63307 1.69590 1.18280 1.48368 1.49992 1.22635 1.13155 1.22122 0.99355 0.98903 0.81617 1.23382 0.98660 0.97261 1.00245 1.21299 0.93620 0.87411 0.91024 0.91023 1.42609 1.18646 1.01113 1.75765 1.19022 0.91643 0.93791 1.33387 0.89010 1.24661 0.96551 0.96902 1.00580 1.69694 1.20224 1.19280 1.48525 0.86580 0.80901 0.83094 0.78119 1.20904 1.21615 1.20296 1.22591 0.94813 0.84463 1.00951 1.23092 1.00643 1.03533 0.92706 1.23059 0.94394 1.03537 0.97314 0.88587 0.88403 0.87530 0.91362 0.90447 0.90781 0.90898 0.91698 0.91856 0.90282 0.90674 0.80347 0.92908 0.91643 0.90313 0.87822 0.88400 0.88247 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 14.32 29.01 0.42 -1.43 16 2 C -0.15 -1.46 9.52 -36.02 -0.34 -1.81 16 3 C -0.10 -1.04 5.01 -27.88 -0.14 -1.18 16 4 C -0.07 -0.62 5.33 -26.73 -0.14 -0.76 16 5 C -0.15 -1.63 1.47 -155.62 -0.23 -1.86 16 6 C 0.57 8.39 5.49 -10.99 -0.06 8.33 16 7 O -0.54 -10.00 17.23 5.56 0.10 -9.90 16 8 N -0.61 -8.91 3.32 -170.39 -0.57 -9.48 16 9 C 0.10 1.30 6.35 -3.06 -0.02 1.28 16 10 C -0.15 -2.39 6.64 -24.89 -0.17 -2.55 16 11 C 0.18 3.26 3.70 -65.66 -0.24 3.02 16 12 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 13 N -0.74 -16.78 5.08 -51.24 -0.26 -17.04 16 14 C -0.25 -6.76 10.47 -15.06 -0.16 -6.92 16 15 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 16 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 17 N -0.93 -28.57 13.97 55.49 0.78 -27.79 16 18 Si 0.88 21.62 27.74 -169.99 -4.71 16.91 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 22 C 0.09 1.59 6.56 -2.41 -0.02 1.57 16 23 C -0.16 -1.43 9.00 -26.73 -0.24 -1.67 16 24 C -0.15 -1.37 9.81 -26.69 -0.26 -1.64 16 25 H 0.10 0.78 8.06 -52.49 -0.42 0.35 16 26 H 0.10 1.02 7.84 -52.48 -0.41 0.61 16 27 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.07 0.89 7.08 -51.93 -0.37 0.52 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.56 7.94 -51.93 -0.41 0.14 16 31 H 0.07 0.65 7.37 -51.93 -0.38 0.27 16 32 H 0.06 0.73 7.37 -51.93 -0.38 0.35 16 33 H 0.06 0.69 7.36 -51.93 -0.38 0.31 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.36 8.16 5.58 -40.82 -0.23 7.93 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.07 1.10 8.01 -51.93 -0.42 0.68 16 39 H 0.08 1.39 7.99 -51.93 -0.41 0.97 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.92 8.12 -51.93 -0.42 0.50 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -31.63 351.31 -8.29 -39.92 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.21 Total: 7.54 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.70 Total: -5.45 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.05 Total: -54.31 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.10 Total: -9.90 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.63 -8.29 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185439403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.470 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds