Wall clock time and date at job start Tue Mar 31 2020 00:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99713 * 2 1 4 4 C 1.53000 * 109.46745 * 124.99903 * 3 2 1 5 5 C 1.53003 * 109.46702 * 174.92237 * 4 3 2 6 6 C 1.50699 * 115.56704 * 39.34765 * 5 4 3 7 7 O 1.21281 * 119.99985 * 260.46649 * 6 5 4 8 8 N 1.34776 * 119.99854 * 80.46174 * 6 5 4 9 9 C 1.47021 * 125.64736 * 354.96136 * 8 6 5 10 10 C 1.54330 * 107.26907 * 181.02060 * 9 8 6 11 11 C 1.55159 * 102.93949 * 22.19590 * 10 9 8 12 12 H 1.08995 * 111.00730 * 82.57690 * 11 10 9 13 13 N 1.46501 * 111.00033 * 206.38323 * 11 10 9 14 14 C 1.36939 * 120.00210 * 273.54965 * 13 11 10 15 15 H 1.07996 * 119.99800 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00196 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00297 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99855 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46814 * 90.00405 * 18 16 14 20 20 H 1.48500 * 109.47107 * 210.00371 * 18 16 14 21 21 H 1.48501 * 109.47095 * 330.00662 * 18 16 14 22 22 C 1.47426 * 125.64789 * 174.65428 * 8 6 5 23 23 C 1.53001 * 117.49708 * 185.03733 * 5 4 3 24 24 C 1.53000 * 60.03376 * 107.49828 * 23 5 4 25 25 H 1.08001 * 120.00096 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.99982 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99788 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47346 * 4.99665 * 3 2 1 29 29 H 1.09001 * 109.46850 * 244.99623 * 3 2 1 30 30 H 1.09001 * 109.47490 * 54.92151 * 4 3 2 31 31 H 1.08997 * 109.47292 * 294.91952 * 4 3 2 32 32 H 1.09000 * 109.88291 * 300.44043 * 9 8 6 33 33 H 1.08994 * 109.88042 * 61.60671 * 9 8 6 34 34 H 1.09005 * 110.71537 * 140.55646 * 10 9 8 35 35 H 1.08994 * 110.72242 * 263.65250 * 10 9 8 36 36 H 0.97003 * 119.99902 * 93.54378 * 13 11 10 37 37 H 0.97006 * 120.00278 * 179.97438 * 17 16 14 38 38 H 1.08999 * 110.36180 * 274.74745 * 22 8 6 39 39 H 1.08996 * 110.36429 * 37.06689 * 22 8 6 40 40 H 1.09000 * 117.49804 * 359.97438 * 23 5 4 41 41 H 1.08995 * 117.49886 * 215.00008 * 23 5 4 42 42 H 1.09004 * 117.49948 * 107.47756 * 24 23 5 43 43 H 1.09003 * 117.50111 * 252.47769 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8887 2.6008 1.1100 6 6 3.1653 3.8483 0.6725 7 8 3.2534 4.2293 -0.4755 8 7 2.4204 4.5404 1.5571 9 6 2.1428 4.1382 2.9437 10 6 1.2322 5.2204 3.5611 11 6 0.5859 5.8827 2.3157 12 1 -0.2693 5.3049 1.9654 13 7 0.2002 7.2675 2.5981 14 6 -1.0211 7.5380 3.1553 15 1 -1.7001 6.7306 3.3862 16 6 -1.3868 8.8502 3.4225 17 7 -2.5608 9.1103 3.9576 18 14 -0.2125 10.2469 3.0225 19 1 -0.4614 10.7214 1.6375 20 1 -0.4303 11.3649 3.9754 21 1 1.1874 9.7647 3.1365 22 6 1.7541 5.8295 1.2964 23 6 5.0077 2.7581 2.1415 24 6 5.3507 2.4454 0.6836 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.6817 0.4567 1.1412 31 1 2.4721 1.3265 2.1150 32 1 1.6337 3.1744 2.9552 33 1 3.0751 4.0740 3.5047 34 1 0.4705 4.7672 4.1958 35 1 1.8208 5.9443 4.1245 36 1 0.8100 7.9928 2.3905 37 1 -2.8162 10.0272 4.1446 38 1 2.4458 6.6548 1.4651 39 1 1.3693 5.8583 0.2771 40 1 5.1353 1.9587 2.8715 41 1 5.2203 3.7637 2.5040 42 1 5.7886 3.2456 0.0868 43 1 5.7046 1.4403 0.4542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185439403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:52 Heat of formation + Delta-G solvation = 1.155658 kcal Electronic energy + Delta-G solvation = -22054.658287 eV Core-core repulsion = 18907.497242 eV Total energy + Delta-G solvation = -3147.161045 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51631 -39.20122 -37.83019 -36.04558 -35.95671 -33.53453 -31.34979 -31.09794 -29.69130 -26.19707 -24.99366 -24.44654 -23.31220 -22.63492 -21.76666 -20.65350 -19.76046 -19.64304 -17.74551 -17.56347 -16.73539 -16.50273 -16.30264 -15.95781 -15.65411 -14.94770 -14.88432 -14.65889 -14.55246 -14.16955 -13.85949 -13.53799 -13.51207 -13.39912 -13.21048 -13.08103 -12.73513 -12.42626 -12.28090 -12.16601 -12.12829 -12.03077 -11.83012 -11.66223 -11.32483 -11.01042 -10.96730 -10.77452 -10.19137 -9.71129 -9.37168 -8.04220 -5.39560 1.37726 1.39561 1.40742 1.47213 1.53195 1.84963 2.46744 2.72972 3.24451 3.40126 3.48509 3.58239 3.79685 3.86828 3.91973 4.00451 4.07732 4.16868 4.28944 4.33027 4.41008 4.47113 4.58160 4.63831 4.70758 4.75096 4.80883 4.91687 4.96433 5.00242 5.02678 5.13806 5.17680 5.21223 5.23192 5.27871 5.37652 5.73100 5.74255 5.90984 6.18844 6.49889 7.03110 7.08592 7.77207 7.96351 9.16722 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.004245 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.844838 B = 6594.160143 C = 7256.312173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.095 4.095 4 C -0.059 4.059 5 C -0.165 4.165 6 C 0.561 3.439 7 O -0.587 6.587 8 N -0.609 5.609 9 C 0.112 3.888 10 C -0.145 4.145 11 C 0.169 3.831 12 H 0.058 0.942 13 N -0.743 5.743 14 C -0.231 4.231 15 H 0.062 0.938 16 C -0.057 4.057 17 N -0.980 5.980 18 Si 0.950 3.050 19 H -0.282 1.282 20 H -0.294 1.294 21 H -0.251 1.251 22 C 0.103 3.897 23 C -0.142 4.142 24 C -0.145 4.145 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.132 0.868 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.367 0.633 37 H 0.259 0.741 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.993 -19.979 -2.722 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.168 4.168 3 C -0.132 4.132 4 C -0.097 4.097 5 C -0.168 4.168 6 C 0.351 3.649 7 O -0.468 6.468 8 N -0.342 5.342 9 C -0.010 4.010 10 C -0.186 4.186 11 C 0.060 3.940 12 H 0.076 0.924 13 N -0.386 5.386 14 C -0.362 4.362 15 H 0.080 0.920 16 C -0.249 4.249 17 N -0.630 5.630 18 Si 0.777 3.223 19 H -0.209 1.209 20 H -0.221 1.221 21 H -0.175 1.175 22 C -0.021 4.021 23 C -0.179 4.179 24 C -0.183 4.183 25 H 0.132 0.868 26 H 0.098 0.902 27 H 0.150 0.850 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.200 0.800 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.153 0.847 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.860 -19.850 -3.284 26.250 hybrid contribution -0.224 1.669 -0.366 1.723 sum 16.637 -18.181 -3.650 24.913 Atomic orbital electron populations 1.24006 0.96432 1.02036 1.01554 1.23036 0.95897 0.98350 0.99537 1.20721 0.97929 0.95247 0.99350 1.21035 0.96520 0.93845 0.98268 1.21424 0.91899 0.93949 1.09521 1.19890 0.77622 0.83859 0.83512 1.90666 1.64818 1.70998 1.20270 1.48451 1.49745 1.21815 1.14141 1.22183 1.00234 0.98347 0.80266 1.23201 0.98931 0.97820 0.98603 1.21422 0.94010 0.85352 0.93234 0.92424 1.42552 1.17298 1.03112 1.75668 1.18965 0.92510 0.92933 1.31769 0.92014 1.25426 0.98337 0.99681 1.01445 1.69864 1.22599 1.19650 1.50936 0.85494 0.79980 0.79384 0.77420 1.20857 1.22103 1.17544 1.22312 0.94318 0.86088 0.99385 1.23227 0.97623 1.04333 0.92708 1.23171 0.92836 1.04406 0.97865 0.86849 0.90180 0.84979 0.94526 0.91831 0.87836 0.90045 0.89802 0.88896 0.90209 0.90871 0.79974 0.93249 0.91385 0.92007 0.84697 0.89013 0.90163 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.71 14.32 67.78 0.97 -2.74 16 2 C -0.15 -2.54 9.52 25.65 0.24 -2.30 16 3 C -0.10 -1.95 5.01 29.85 0.15 -1.80 16 4 C -0.06 -0.90 5.33 30.60 0.16 -0.74 16 5 C -0.16 -3.13 1.47 -52.90 -0.08 -3.21 16 6 C 0.56 16.16 5.49 87.66 0.48 16.64 16 7 O -0.59 -22.04 17.23 -3.03 -0.05 -22.09 16 8 N -0.61 -17.14 3.32 -811.37 -2.70 -19.84 16 9 C 0.11 2.51 6.35 86.73 0.55 3.06 16 10 C -0.15 -4.26 6.64 31.79 0.21 -4.05 16 11 C 0.17 6.21 3.70 46.46 0.17 6.39 16 12 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 13 N -0.74 -33.70 5.08 -316.03 -1.61 -35.31 16 14 C -0.23 -12.80 10.47 84.03 0.88 -11.92 16 15 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 16 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 17 N -0.98 -61.92 13.97 21.65 0.30 -61.62 16 18 Si 0.95 44.87 27.74 68.60 1.90 46.77 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 22 C 0.10 3.44 6.56 86.93 0.57 4.01 16 23 C -0.14 -1.89 9.00 30.59 0.28 -1.61 16 24 C -0.15 -2.30 9.81 30.62 0.30 -2.00 16 25 H 0.11 1.64 8.06 -2.91 -0.02 1.62 16 26 H 0.08 1.72 7.84 -2.91 -0.02 1.69 16 27 H 0.13 1.59 8.06 -2.91 -0.02 1.56 16 28 H 0.04 0.96 7.08 -2.39 -0.02 0.95 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.03 7.94 -2.39 -0.02 1.01 16 31 H 0.08 1.12 7.37 -2.39 -0.02 1.10 16 32 H 0.08 1.62 7.37 -2.39 -0.02 1.60 16 33 H 0.09 1.62 7.36 -2.39 -0.02 1.60 16 34 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.37 16.08 5.58 -92.71 -0.52 15.57 16 37 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 38 H 0.07 2.24 8.01 -2.39 -0.02 2.22 16 39 H 0.06 2.25 7.99 -2.39 -0.02 2.23 16 40 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.13 1.35 8.08 -2.39 -0.02 1.34 16 Total: -1.00 -71.53 351.31 3.61 -67.92 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.40 Total: 27.27 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 5.36 Total: -3.11 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -4.00 Total: -116.77 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.05 Total: -22.09 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Total: -71.53 3.61 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185439403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.078 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds