Wall clock time and date at job start Tue Mar 31 2020 00:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50710 * 119.99481 * 2 1 4 4 C 1.52998 * 109.46678 * 122.64205 * 3 2 1 5 5 C 1.50705 * 112.84961 * 294.59490 * 4 3 2 6 6 O 1.21283 * 119.99987 * 112.70239 * 5 4 3 7 7 N 1.34770 * 119.99738 * 292.70349 * 5 4 3 8 8 C 1.47023 * 125.65475 * 354.97989 * 7 5 4 9 9 C 1.54324 * 107.27315 * 181.02274 * 8 7 5 10 10 C 1.55157 * 102.94101 * 22.19602 * 9 8 7 11 11 H 1.09001 * 111.00284 * 82.57082 * 10 9 8 12 12 N 1.46501 * 111.03319 * 206.40682 * 10 9 8 13 13 C 1.36941 * 120.00136 * 270.39165 * 12 10 9 14 14 H 1.08005 * 119.99850 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00129 * 179.97438 * 13 12 10 16 16 N 1.31622 * 119.99881 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00086 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47209 * 90.00448 * 17 15 13 19 19 H 1.48507 * 109.47337 * 210.00437 * 17 15 13 20 20 H 1.48502 * 109.47113 * 330.00394 * 17 15 13 21 21 C 1.47432 * 125.64696 * 174.94088 * 7 5 4 22 22 C 1.53786 * 113.61779 * 65.79154 * 4 3 2 23 23 C 1.53962 * 87.01531 * 89.22686 * 22 4 3 24 24 C 1.53785 * 113.61426 * 163.40416 * 4 3 2 25 25 H 1.07990 * 120.00602 * 3.23503 * 1 2 3 26 26 H 1.08004 * 119.99317 * 183.22876 * 1 2 3 27 27 H 1.07998 * 120.00714 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47234 * 2.64370 * 3 2 1 29 29 H 1.09001 * 109.47073 * 242.63824 * 3 2 1 30 30 H 1.09001 * 109.88211 * 300.44115 * 8 7 5 31 31 H 1.09004 * 109.88118 * 61.60517 * 8 7 5 32 32 H 1.08996 * 110.71894 * 263.82809 * 9 8 7 33 33 H 1.09005 * 110.71491 * 140.55719 * 9 8 7 34 34 H 0.96998 * 119.99970 * 90.39708 * 12 10 9 35 35 H 0.97004 * 119.99493 * 179.97438 * 16 15 13 36 36 H 1.08998 * 110.36576 * 37.06984 * 21 7 5 37 37 H 1.08994 * 110.36572 * 274.74608 * 21 7 5 38 38 H 1.08996 * 113.61265 * 203.74242 * 22 4 3 39 39 H 1.08993 * 113.61507 * 334.65138 * 22 4 3 40 40 H 1.08995 * 113.53755 * 270.80783 * 23 22 4 41 41 H 1.09005 * 113.73613 * 139.94262 * 23 22 4 42 42 H 1.08997 * 113.61193 * 25.33823 * 24 4 3 43 43 H 1.08997 * 113.61735 * 156.25368 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 6 2.9922 1.3579 1.2147 5 6 2.2440 1.3857 2.5226 6 8 2.3108 0.4404 3.2796 7 7 1.5008 2.4608 2.8510 8 6 1.4145 3.7105 2.0813 9 6 0.4698 4.6580 2.8503 10 6 0.5224 4.1017 4.2977 11 1 1.3974 4.4766 4.8288 12 7 -0.7074 4.4188 5.0279 13 6 -0.8015 5.5873 5.7358 14 1 0.0308 6.2753 5.7554 15 6 -1.9670 5.8880 6.4272 16 7 -2.9815 5.0497 6.4029 17 14 -2.0956 7.4822 7.3922 18 1 -2.6362 8.5504 6.5136 19 1 -3.0038 7.2876 8.5510 20 1 -0.7491 7.8760 7.8792 21 6 0.6389 2.5785 4.0414 22 6 4.1210 0.3143 1.1728 23 6 4.9575 1.3674 0.4232 24 6 4.0859 2.4337 1.1077 25 1 -0.5400 0.9337 -0.0528 26 1 -0.5399 -0.9339 0.0527 27 1 1.8501 -0.9352 -0.0004 28 1 1.3560 2.1331 0.0474 29 1 2.6541 1.3838 -0.9127 30 1 2.4029 4.1619 1.9952 31 1 1.0096 3.5078 1.0897 32 1 -0.5429 4.6002 2.4514 33 1 0.8406 5.6825 2.8171 34 1 -1.4550 3.8010 5.0100 35 1 -3.7958 5.2597 6.8864 36 1 1.1022 2.0845 4.8954 37 1 -0.3437 2.1511 3.8419 38 1 4.5177 0.0606 2.1558 39 1 3.8823 -0.5632 0.5721 40 1 4.8340 1.3314 -0.6591 41 1 6.0033 1.3961 0.7293 42 1 3.8188 3.2643 0.4545 43 1 4.4731 2.7602 2.0729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185462814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:31 Heat of formation + Delta-G solvation = 16.889850 kcal Electronic energy + Delta-G solvation = -22349.185785 eV Core-core repulsion = 19202.707026 eV Total energy + Delta-G solvation = -3146.478759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82751 -38.38974 -36.88321 -34.42844 -34.08682 -31.51828 -29.54348 -28.90106 -27.52385 -25.82244 -25.05547 -23.49128 -22.67627 -20.31114 -20.09739 -19.73766 -18.37873 -17.33745 -16.95714 -16.01134 -15.74506 -15.30999 -14.71241 -14.43551 -14.32832 -13.96588 -13.52297 -13.23189 -13.12456 -12.73320 -12.54095 -12.46504 -12.15654 -11.97704 -11.82189 -11.60831 -11.26754 -11.22216 -11.10014 -10.86725 -10.69049 -10.64916 -10.34516 -10.28809 -10.06518 -9.77920 -9.53926 -9.25960 -8.96892 -8.33413 -7.05823 -5.83406 -3.13977 2.20230 2.82522 3.21089 3.40100 3.45780 3.47363 4.22356 4.33764 4.52728 4.54495 4.59625 4.80192 4.98043 5.03733 5.07767 5.26769 5.29838 5.35225 5.41090 5.52808 5.55447 5.60074 5.63667 5.70227 5.71055 5.78538 5.81440 5.92729 6.00181 6.02264 6.15400 6.21230 6.27449 6.38635 6.55369 6.57854 6.63969 6.68614 6.90657 7.64191 7.80935 8.33831 8.40185 9.45656 9.99862 10.34842 11.38844 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029219 B = 0.003896 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.036144 B = 7185.388597 C = 7502.662078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.156 4.156 3 C -0.068 4.068 4 C -0.095 4.095 5 C 0.544 3.456 6 O -0.545 6.545 7 N -0.609 5.609 8 C 0.100 3.900 9 C -0.156 4.156 10 C 0.172 3.828 11 H 0.064 0.936 12 N -0.715 5.715 13 C -0.245 4.245 14 H 0.072 0.928 15 C -0.010 4.010 16 N -0.930 5.930 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.098 3.902 22 C -0.112 4.112 23 C -0.141 4.141 24 C -0.125 4.125 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.016 -6.425 -15.895 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.174 4.174 3 C -0.105 4.105 4 C -0.098 4.098 5 C 0.332 3.668 6 O -0.422 6.422 7 N -0.343 5.343 8 C -0.023 4.023 9 C -0.197 4.197 10 C 0.060 3.940 11 H 0.082 0.918 12 N -0.355 5.355 13 C -0.376 4.376 14 H 0.090 0.910 15 C -0.206 4.206 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.026 4.026 22 C -0.149 4.149 23 C -0.178 4.178 24 C -0.163 4.163 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.090 -6.828 -15.377 21.317 hybrid contribution -0.563 0.729 0.508 1.052 sum 12.527 -6.099 -14.869 20.377 Atomic orbital electron populations 1.23859 0.95933 1.02000 1.00388 1.22813 0.95968 0.98167 1.00433 1.20559 0.97663 0.96471 0.95805 1.22029 0.94513 1.00072 0.93224 1.19943 0.78333 0.81130 0.87393 1.90670 1.63591 1.35538 1.52439 1.48392 1.45125 1.14989 1.25793 1.22199 1.00137 0.84778 0.95168 1.23426 0.99010 0.98238 0.99042 1.21283 0.91734 0.90246 0.90711 0.91824 1.42262 1.12381 1.23215 1.57619 1.19219 0.99095 0.96294 1.22947 0.90993 1.24766 0.96347 0.98632 1.00866 1.69667 1.04894 1.36497 1.46728 0.86173 0.77384 0.83029 0.79468 1.21634 1.21711 1.20675 1.22543 0.93900 0.98799 0.87313 1.22866 0.94203 0.96321 1.01554 1.22876 0.98828 0.96384 0.99744 1.22989 0.95258 0.96380 1.01679 0.88573 0.88472 0.87319 0.90396 0.89971 0.91804 0.92118 0.90648 0.90784 0.77953 0.93353 0.90695 0.91518 0.89193 0.90909 0.89944 0.91085 0.90515 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 14.32 29.02 0.42 -1.65 16 2 C -0.16 -1.70 8.70 -36.02 -0.31 -2.01 16 3 C -0.07 -0.67 4.96 -27.88 -0.14 -0.81 16 4 C -0.10 -1.08 0.36 -154.84 -0.06 -1.13 16 5 C 0.54 8.55 6.37 -10.99 -0.07 8.48 16 6 O -0.54 -10.64 16.42 5.55 0.09 -10.55 16 7 N -0.61 -9.50 3.33 -170.52 -0.57 -10.07 16 8 C 0.10 1.32 5.90 -3.06 -0.02 1.30 16 9 C -0.16 -2.51 6.65 -24.90 -0.17 -2.68 16 10 C 0.17 3.34 3.70 -65.78 -0.24 3.09 16 11 H 0.06 1.26 8.11 -51.93 -0.42 0.84 16 12 N -0.71 -17.42 5.26 -51.35 -0.27 -17.69 16 13 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 14 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 15 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 16 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 17 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.10 1.78 6.57 -2.53 -0.02 1.76 16 22 C -0.11 -1.16 6.74 -25.82 -0.17 -1.34 16 23 C -0.14 -1.12 7.74 -25.82 -0.20 -1.32 16 24 C -0.13 -1.17 5.60 -25.91 -0.15 -1.31 16 25 H 0.10 1.06 7.84 -52.49 -0.41 0.65 16 26 H 0.10 1.00 8.06 -52.48 -0.42 0.58 16 27 H 0.11 1.12 7.30 -52.49 -0.38 0.74 16 28 H 0.08 0.79 5.32 -51.93 -0.28 0.51 16 29 H 0.08 0.64 7.32 -51.93 -0.38 0.26 16 30 H 0.06 0.73 6.90 -51.93 -0.36 0.37 16 31 H 0.06 0.70 5.93 -51.93 -0.31 0.39 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.39 10.06 7.73 -40.82 -0.32 9.75 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 1.45 7.99 -51.93 -0.41 1.04 16 37 H 0.07 1.26 8.00 -51.93 -0.42 0.85 16 38 H 0.09 1.08 7.75 -51.93 -0.40 0.68 16 39 H 0.07 0.70 7.10 -51.93 -0.37 0.33 16 40 H 0.08 0.55 7.61 -51.93 -0.40 0.15 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 43 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -31.13 341.53 -8.19 -39.31 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.92 Total: 8.55 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.37 Total: -4.72 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.11 Total: -54.65 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.13 -8.19 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185462814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.203 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds