Wall clock time and date at job start Tue Mar 31 2020 00:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50710 * 119.99481 * 2 1 4 4 C 1.52998 * 109.46678 * 122.64205 * 3 2 1 5 5 C 1.50705 * 112.84961 * 294.59490 * 4 3 2 6 6 O 1.21283 * 119.99987 * 112.70239 * 5 4 3 7 7 N 1.34770 * 119.99738 * 292.70349 * 5 4 3 8 8 C 1.47023 * 125.65475 * 354.97989 * 7 5 4 9 9 C 1.54324 * 107.27315 * 181.02274 * 8 7 5 10 10 C 1.55157 * 102.94101 * 22.19602 * 9 8 7 11 11 H 1.09001 * 111.00284 * 82.57082 * 10 9 8 12 12 N 1.46501 * 111.03319 * 206.40682 * 10 9 8 13 13 C 1.36941 * 120.00136 * 270.39165 * 12 10 9 14 14 H 1.08005 * 119.99850 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00129 * 179.97438 * 13 12 10 16 16 N 1.31622 * 119.99881 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00086 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47209 * 90.00448 * 17 15 13 19 19 H 1.48507 * 109.47337 * 210.00437 * 17 15 13 20 20 H 1.48502 * 109.47113 * 330.00394 * 17 15 13 21 21 C 1.47432 * 125.64696 * 174.94088 * 7 5 4 22 22 C 1.53786 * 113.61779 * 65.79154 * 4 3 2 23 23 C 1.53962 * 87.01531 * 89.22686 * 22 4 3 24 24 C 1.53785 * 113.61426 * 163.40416 * 4 3 2 25 25 H 1.07990 * 120.00602 * 3.23503 * 1 2 3 26 26 H 1.08004 * 119.99317 * 183.22876 * 1 2 3 27 27 H 1.07998 * 120.00714 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47234 * 2.64370 * 3 2 1 29 29 H 1.09001 * 109.47073 * 242.63824 * 3 2 1 30 30 H 1.09001 * 109.88211 * 300.44115 * 8 7 5 31 31 H 1.09004 * 109.88118 * 61.60517 * 8 7 5 32 32 H 1.08996 * 110.71894 * 263.82809 * 9 8 7 33 33 H 1.09005 * 110.71491 * 140.55719 * 9 8 7 34 34 H 0.96998 * 119.99970 * 90.39708 * 12 10 9 35 35 H 0.97004 * 119.99493 * 179.97438 * 16 15 13 36 36 H 1.08998 * 110.36576 * 37.06984 * 21 7 5 37 37 H 1.08994 * 110.36572 * 274.74608 * 21 7 5 38 38 H 1.08996 * 113.61265 * 203.74242 * 22 4 3 39 39 H 1.08993 * 113.61507 * 334.65138 * 22 4 3 40 40 H 1.08995 * 113.53755 * 270.80783 * 23 22 4 41 41 H 1.09005 * 113.73613 * 139.94262 * 23 22 4 42 42 H 1.08997 * 113.61193 * 25.33823 * 24 4 3 43 43 H 1.08997 * 113.61735 * 156.25368 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 6 2.9922 1.3579 1.2147 5 6 2.2440 1.3857 2.5226 6 8 2.3108 0.4404 3.2796 7 7 1.5008 2.4608 2.8510 8 6 1.4145 3.7105 2.0813 9 6 0.4698 4.6580 2.8503 10 6 0.5224 4.1017 4.2977 11 1 1.3974 4.4766 4.8288 12 7 -0.7074 4.4188 5.0279 13 6 -0.8015 5.5873 5.7358 14 1 0.0308 6.2753 5.7554 15 6 -1.9670 5.8880 6.4272 16 7 -2.9815 5.0497 6.4029 17 14 -2.0956 7.4822 7.3922 18 1 -2.6362 8.5504 6.5136 19 1 -3.0038 7.2876 8.5510 20 1 -0.7491 7.8760 7.8792 21 6 0.6389 2.5785 4.0414 22 6 4.1210 0.3143 1.1728 23 6 4.9575 1.3674 0.4232 24 6 4.0859 2.4337 1.1077 25 1 -0.5400 0.9337 -0.0528 26 1 -0.5399 -0.9339 0.0527 27 1 1.8501 -0.9352 -0.0004 28 1 1.3560 2.1331 0.0474 29 1 2.6541 1.3838 -0.9127 30 1 2.4029 4.1619 1.9952 31 1 1.0096 3.5078 1.0897 32 1 -0.5429 4.6002 2.4514 33 1 0.8406 5.6825 2.8171 34 1 -1.4550 3.8010 5.0100 35 1 -3.7958 5.2597 6.8864 36 1 1.1022 2.0845 4.8954 37 1 -0.3437 2.1511 3.8419 38 1 4.5177 0.0606 2.1558 39 1 3.8823 -0.5632 0.5721 40 1 4.8340 1.3314 -0.6591 41 1 6.0033 1.3961 0.7293 42 1 3.8188 3.2643 0.4545 43 1 4.4731 2.7602 2.0729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185462814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:30 Heat of formation + Delta-G solvation = -2.120144 kcal Electronic energy + Delta-G solvation = -22350.010120 eV Core-core repulsion = 19202.707026 eV Total energy + Delta-G solvation = -3147.303094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.87254 -39.57274 -38.22207 -35.94469 -35.18673 -33.31521 -31.06131 -30.03748 -28.77758 -26.62703 -26.24892 -25.19903 -23.88280 -21.65733 -21.17599 -20.75211 -19.38740 -19.29675 -18.00704 -17.42607 -16.87692 -16.47444 -16.07474 -15.84338 -15.40647 -15.12285 -14.90859 -14.62010 -14.46453 -14.17944 -13.71863 -13.34433 -13.27033 -13.14996 -13.04106 -12.85416 -12.77727 -12.65345 -12.35012 -12.16669 -12.05599 -11.97709 -11.76093 -11.58489 -11.42746 -11.11370 -10.94066 -10.61790 -10.19721 -9.64595 -9.06018 -7.95863 -5.26383 1.35365 1.49005 1.50580 1.58890 1.61709 1.96518 2.56880 3.33573 3.38592 3.48329 3.69049 3.71767 3.84304 3.89263 4.00467 4.05413 4.16607 4.22753 4.32978 4.34448 4.50228 4.57487 4.63717 4.70559 4.80303 4.82517 4.89382 4.93771 4.98736 5.03308 5.12953 5.15639 5.24171 5.24739 5.26218 5.41106 5.51758 5.53531 5.72886 5.84457 6.24655 6.57912 7.15075 7.31386 8.02378 8.26900 9.27586 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029219 B = 0.003896 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.036144 B = 7185.388597 C = 7502.662078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.064 4.064 4 C -0.094 4.094 5 C 0.537 3.463 6 O -0.593 6.593 7 N -0.609 5.609 8 C 0.107 3.893 9 C -0.144 4.144 10 C 0.167 3.833 11 H 0.061 0.939 12 N -0.729 5.729 13 C -0.242 4.242 14 H 0.081 0.919 15 C -0.073 4.073 16 N -0.970 5.970 17 Si 0.974 3.026 18 H -0.284 1.284 19 H -0.299 1.299 20 H -0.268 1.268 21 C 0.106 3.894 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.123 4.123 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.373 0.627 35 H 0.251 0.749 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.095 -5.008 -18.374 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.178 4.178 3 C -0.101 4.101 4 C -0.097 4.097 5 C 0.327 3.673 6 O -0.473 6.473 7 N -0.342 5.342 8 C -0.015 4.015 9 C -0.185 4.185 10 C 0.057 3.943 11 H 0.079 0.921 12 N -0.369 5.369 13 C -0.373 4.373 14 H 0.099 0.901 15 C -0.265 4.265 16 N -0.620 5.620 17 Si 0.803 3.197 18 H -0.211 1.211 19 H -0.226 1.226 20 H -0.193 1.193 21 C -0.018 4.018 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.160 4.160 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.206 0.794 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.229 -5.388 -17.905 24.116 hybrid contribution -1.153 0.195 1.287 1.739 sum 14.077 -5.193 -16.618 22.389 Atomic orbital electron populations 1.23959 0.96383 1.02158 1.01271 1.23027 0.96004 0.99124 0.99644 1.20617 0.97627 0.95660 0.96191 1.22176 0.94620 1.01993 0.90939 1.20928 0.77714 0.80052 0.88562 1.90645 1.65166 1.37226 1.54308 1.48480 1.44575 1.16152 1.24966 1.22326 1.01050 0.82860 0.95274 1.23219 0.99404 0.99559 0.96314 1.21425 0.89571 0.91124 0.92220 0.92133 1.42415 1.13551 1.22485 1.58413 1.19619 0.98984 0.96784 1.21923 0.90093 1.25577 0.96344 1.01944 1.02656 1.69830 1.05390 1.38534 1.48285 0.85130 0.77538 0.79309 0.77698 1.21123 1.22578 1.19322 1.22211 0.93728 0.97743 0.88158 1.22903 0.94613 0.97314 1.00988 1.22852 0.98690 0.93757 1.00696 1.23031 0.94174 0.96949 1.01885 0.88613 0.88397 0.87076 0.90257 0.86684 0.88905 0.89398 0.91873 0.89505 0.79450 0.93998 0.92795 0.92839 0.91696 0.90221 0.87444 0.90224 0.87957 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.30 14.32 67.78 0.97 -3.33 16 2 C -0.16 -3.20 8.70 25.65 0.22 -2.97 16 3 C -0.06 -1.04 4.96 29.85 0.15 -0.89 16 4 C -0.09 -1.90 0.36 -52.40 -0.02 -1.92 16 5 C 0.54 16.53 6.37 87.66 0.56 17.09 16 6 O -0.59 -23.77 16.42 -3.04 -0.05 -23.82 16 7 N -0.61 -18.43 3.33 -811.79 -2.70 -21.14 16 8 C 0.11 2.49 5.90 86.73 0.51 3.00 16 9 C -0.14 -4.39 6.65 31.78 0.21 -4.18 16 10 C 0.17 6.45 3.70 46.38 0.17 6.63 16 11 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 12 N -0.73 -36.23 5.26 -316.38 -1.67 -37.89 16 13 C -0.24 -13.05 9.97 84.03 0.84 -12.21 16 14 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 15 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 16 N -0.97 -59.00 13.06 21.65 0.28 -58.71 16 17 Si 0.97 45.29 29.55 68.60 2.03 47.31 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C 0.11 3.96 6.57 86.85 0.57 4.53 16 22 C -0.12 -2.27 6.74 31.18 0.21 -2.06 16 23 C -0.12 -1.46 7.74 31.18 0.24 -1.21 16 24 C -0.12 -1.80 5.60 31.12 0.17 -1.63 16 25 H 0.10 2.02 7.84 -2.92 -0.02 2.00 16 26 H 0.10 2.01 8.06 -2.91 -0.02 1.98 16 27 H 0.11 2.13 7.30 -2.91 -0.02 2.11 16 28 H 0.08 1.28 5.32 -2.39 -0.01 1.27 16 29 H 0.12 1.18 7.32 -2.39 -0.02 1.17 16 30 H 0.09 1.71 6.90 -2.39 -0.02 1.69 16 31 H 0.09 1.66 5.93 -2.39 -0.01 1.65 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.37 20.21 7.73 -92.71 -0.72 19.49 16 35 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.05 2.21 7.99 -2.39 -0.02 2.19 16 37 H 0.05 2.12 8.00 -2.39 -0.02 2.10 16 38 H 0.06 1.55 7.75 -2.39 -0.02 1.53 16 39 H 0.08 1.36 7.10 -2.39 -0.02 1.34 16 40 H 0.11 0.81 7.61 -2.39 -0.02 0.79 16 41 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.10 1.02 7.92 -2.39 -0.02 1.00 16 43 H 0.07 1.29 8.09 -2.39 -0.02 1.28 16 Total: -1.00 -69.70 341.53 3.45 -66.26 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.27 Total: 30.80 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.28 Total: -2.81 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -4.08 Total: -117.74 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.70 3.45 -66.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185462814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.136 kcal (2) G-P(sol) polarization free energy of solvation -69.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds