Wall clock time and date at job start Tue Mar 31 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46999 * 2 1 4 4 C 1.32996 * 119.99671 * 121.48485 * 3 2 1 5 5 C 1.50696 * 120.00189 * 354.54010 * 4 3 2 6 6 C 1.47102 * 119.99890 * 174.53951 * 4 3 2 7 7 O 1.21619 * 119.99900 * 261.28359 * 6 4 3 8 8 N 1.34778 * 119.99920 * 81.28406 * 6 4 3 9 9 C 1.47345 * 125.53055 * 355.43709 * 8 6 4 10 10 C 1.54938 * 104.89057 * 156.56616 * 9 8 6 11 11 C 1.54792 * 101.50190 * 37.23658 * 10 9 8 12 12 H 1.09005 * 112.64240 * 85.33748 * 11 10 9 13 13 C 1.53270 * 110.31234 * 212.07102 * 11 10 9 14 14 N 1.46589 * 108.15598 * 95.99744 * 13 11 10 15 15 C 1.36935 * 125.30446 * 177.92331 * 14 13 11 16 16 H 1.08004 * 120.00257 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00176 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99496 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46884 * 60.00365 * 19 17 15 21 21 H 1.48500 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47081 * 300.00323 * 19 17 15 23 23 C 1.47294 * 109.28850 * 357.29512 * 14 13 11 24 24 C 1.47216 * 125.52516 * 175.46463 * 8 6 4 25 25 H 1.08999 * 112.28618 * 56.22593 * 24 8 6 26 26 H 1.09007 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47179 * 299.99345 * 1 2 3 28 28 H 1.08999 * 109.47644 * 59.99810 * 1 2 3 29 29 H 1.09009 * 109.46903 * 240.00421 * 2 1 3 30 30 H 1.08997 * 109.47533 * 120.00728 * 2 1 3 31 31 H 1.07996 * 120.00547 * 301.48474 * 3 2 1 32 32 H 1.09004 * 109.47490 * 184.83647 * 5 4 3 33 33 H 1.09004 * 109.47278 * 304.83793 * 5 4 3 34 34 H 1.09001 * 109.47500 * 64.83120 * 5 4 3 35 35 H 1.08993 * 110.35580 * 275.41950 * 9 8 6 36 36 H 1.09004 * 110.35272 * 37.71916 * 9 8 6 37 37 H 1.09003 * 111.01942 * 155.29085 * 10 9 8 38 38 H 1.09002 * 111.02212 * 279.17903 * 10 9 8 39 39 H 1.08999 * 109.73703 * 215.68115 * 13 11 10 40 40 H 1.08993 * 109.73654 * 336.31081 * 13 11 10 41 41 H 0.97006 * 119.99593 * 180.02562 * 18 17 15 42 42 H 1.09006 * 110.83316 * 259.07762 * 23 14 13 43 43 H 1.08993 * 109.33081 * 137.58618 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.8210 1.8472 0.9822 5 6 3.1129 0.9502 2.1575 6 6 3.4086 3.1944 0.9214 7 8 4.5530 3.3419 0.5372 8 7 2.6787 4.2652 1.2916 9 6 1.2586 4.2395 1.6837 10 6 1.0643 5.5028 2.5594 11 6 1.9742 6.5238 1.8344 12 1 1.4689 7.0234 1.0078 13 6 2.5732 7.5117 2.8415 14 7 3.9081 7.0328 3.2125 15 6 4.7707 7.6728 4.0619 16 1 4.4847 8.6093 4.5174 17 6 6.0129 7.1178 4.3375 18 7 6.3617 5.9768 3.7820 19 14 7.1899 7.9912 5.4957 20 1 6.5561 8.1330 6.8311 21 1 8.4393 7.1986 5.6219 22 1 7.5100 9.3364 4.9543 23 6 4.1686 5.7486 2.5398 24 6 3.1708 5.6505 1.3691 25 1 3.5928 5.9928 0.4242 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.7517 2.0928 -0.7975 32 1 3.7011 1.4969 2.8946 33 1 2.1752 0.6260 2.6089 34 1 3.6735 0.0788 1.8192 35 1 0.6207 4.2881 0.8012 36 1 1.0409 3.3408 2.2610 37 1 0.0244 5.8295 2.5492 38 1 1.4075 5.3282 3.5791 39 1 2.6497 8.4996 2.3872 40 1 1.9410 7.5626 3.7279 41 1 7.2296 5.5887 3.9749 42 1 4.0195 4.9145 3.2256 43 1 5.1898 5.7414 2.1589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187093104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:23 Heat of formation + Delta-G solvation = 7.771904 kcal Electronic energy + Delta-G solvation = -22656.197189 eV Core-core repulsion = 19509.323046 eV Total energy + Delta-G solvation = -3146.874143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10079 -38.03150 -36.02977 -34.84185 -32.30884 -31.60723 -30.59316 -28.62616 -27.17900 -26.66551 -24.64785 -24.00869 -22.46486 -20.73674 -20.05279 -19.09040 -18.07907 -16.91862 -16.61493 -15.63772 -15.35083 -14.85343 -14.47949 -14.23546 -13.79852 -13.72947 -13.36870 -13.11633 -12.71809 -12.62359 -12.48259 -12.26623 -12.09172 -11.89943 -11.74320 -11.53340 -11.44313 -11.17287 -11.02547 -10.97621 -10.75241 -10.45168 -10.16566 -10.00915 -9.72557 -9.66545 -9.36832 -8.91499 -8.57122 -8.14196 -6.79192 -5.59093 -3.01651 1.85515 3.01041 3.42644 3.44434 3.48056 3.50438 4.53003 4.56451 4.84317 4.86252 4.91759 5.09257 5.14801 5.16540 5.25715 5.49635 5.53167 5.56684 5.60420 5.62291 5.66423 5.71773 5.75386 5.83928 5.90163 5.94765 5.97900 5.99786 6.06012 6.25031 6.37082 6.43380 6.55918 6.63548 6.67310 6.72303 6.91840 7.56284 7.66998 7.92739 8.02297 8.40759 8.60521 9.26641 9.88335 10.51080 11.45150 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.004865 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.692907 B = 5753.641809 C = 6453.419775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.143 4.143 5 C -0.106 4.106 6 C 0.565 3.435 7 O -0.525 6.525 8 N -0.604 5.604 9 C 0.106 3.894 10 C -0.122 4.122 11 C -0.109 4.109 12 H 0.086 0.914 13 C 0.146 3.854 14 N -0.602 5.602 15 C -0.232 4.232 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.915 5.915 19 Si 0.913 3.087 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.165 3.835 24 C 0.113 3.887 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.872 -9.653 -6.151 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.148 4.148 4 C -0.147 4.147 5 C -0.163 4.163 6 C 0.353 3.647 7 O -0.401 6.401 8 N -0.338 5.338 9 C -0.017 4.017 10 C -0.160 4.160 11 C -0.129 4.129 12 H 0.104 0.896 13 C 0.019 3.981 14 N -0.329 5.329 15 C -0.361 4.361 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.562 5.562 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.039 3.961 24 C 0.009 3.991 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.971 -9.676 -6.291 18.122 hybrid contribution 0.541 0.478 0.591 0.933 sum -13.430 -9.197 -5.700 17.247 Atomic orbital electron populations 1.21691 0.94965 1.01596 1.02112 1.20698 0.96122 0.93749 1.02999 1.23137 0.96507 0.97386 0.97809 1.21499 0.99385 0.95110 0.98657 1.20679 1.01948 0.98339 0.95289 1.18130 0.85363 0.83743 0.77446 1.90860 1.17312 1.85643 1.46246 1.48587 1.11323 1.07540 1.66312 1.22243 0.82348 0.99241 0.97917 1.22784 0.99547 0.93981 0.99717 1.22860 0.95544 0.96198 0.98252 0.89590 1.20967 0.88001 0.94714 0.94404 1.44329 1.12545 1.22227 1.53786 1.18986 0.94844 1.03324 1.18911 0.90408 1.24843 0.97836 0.97245 1.00430 1.69908 1.21404 1.18631 1.46266 0.86185 0.80452 0.78577 0.80437 1.21231 1.21577 1.21110 1.21785 0.98147 0.87007 0.89125 1.22976 0.96072 0.79193 1.00850 0.90006 0.92575 0.92489 0.92658 0.90796 0.90697 0.87086 0.91290 0.90981 0.90914 0.91978 0.91068 0.90414 0.89983 0.95803 0.95800 0.93583 0.96225 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.15 0.37 -0.70 16 2 C -0.10 -0.86 6.21 -27.89 -0.17 -1.04 16 3 C -0.13 -1.51 9.22 -36.13 -0.33 -1.84 16 4 C -0.14 -2.08 4.60 -102.85 -0.47 -2.55 16 5 C -0.11 -1.33 8.55 36.00 0.31 -1.03 16 6 C 0.57 10.88 6.94 -12.66 -0.09 10.79 16 7 O -0.52 -12.63 17.32 5.26 0.09 -12.53 16 8 N -0.60 -10.87 2.85 -163.05 -0.46 -11.34 16 9 C 0.11 1.43 6.70 -2.56 -0.02 1.41 16 10 C -0.12 -1.74 6.26 -24.76 -0.15 -1.89 16 11 C -0.11 -1.85 3.87 -88.33 -0.34 -2.19 16 12 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 13 C 0.15 3.01 6.68 -3.85 -0.03 2.98 16 14 N -0.60 -15.82 3.39 -171.66 -0.58 -16.40 16 15 C -0.23 -6.64 10.25 -15.06 -0.15 -6.79 16 16 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.91 -28.17 10.16 55.49 0.56 -27.60 16 19 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.16 4.28 4.96 -3.01 -0.01 4.26 16 24 C 0.11 2.31 3.85 -65.74 -0.25 2.06 16 25 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.07 0.63 5.86 -51.93 -0.30 0.32 16 31 H 0.11 1.29 8.05 -52.49 -0.42 0.86 16 32 H 0.07 1.03 7.99 -51.93 -0.42 0.61 16 33 H 0.07 0.72 7.76 -51.93 -0.40 0.32 16 34 H 0.07 0.82 7.81 -51.93 -0.41 0.41 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.87 7.63 -51.93 -0.40 0.48 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.02 0.48 7.77 -51.93 -0.40 0.08 16 41 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 43 H 0.10 2.96 6.18 -51.93 -0.32 2.64 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -34.09 342.39 -8.95 -43.04 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.25 Total: -1.13 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.45 Total: 3.17 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.48 Total: -55.34 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.09 -8.95 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187093104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.813 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds