Wall clock time and date at job start Tue Mar 31 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46999 * 2 1 4 4 C 1.32996 * 119.99671 * 121.48485 * 3 2 1 5 5 C 1.50696 * 120.00189 * 354.54010 * 4 3 2 6 6 C 1.47102 * 119.99890 * 174.53951 * 4 3 2 7 7 O 1.21619 * 119.99900 * 261.28359 * 6 4 3 8 8 N 1.34778 * 119.99920 * 81.28406 * 6 4 3 9 9 C 1.47345 * 125.53055 * 355.43709 * 8 6 4 10 10 C 1.54938 * 104.89057 * 156.56616 * 9 8 6 11 11 C 1.54792 * 101.50190 * 37.23658 * 10 9 8 12 12 H 1.09005 * 112.64240 * 85.33748 * 11 10 9 13 13 C 1.53270 * 110.31234 * 212.07102 * 11 10 9 14 14 N 1.46589 * 108.15598 * 95.99744 * 13 11 10 15 15 C 1.36935 * 125.30446 * 177.92331 * 14 13 11 16 16 H 1.08004 * 120.00257 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00176 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99496 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46884 * 60.00365 * 19 17 15 21 21 H 1.48500 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47081 * 300.00323 * 19 17 15 23 23 C 1.47294 * 109.28850 * 357.29512 * 14 13 11 24 24 C 1.47216 * 125.52516 * 175.46463 * 8 6 4 25 25 H 1.08999 * 112.28618 * 56.22593 * 24 8 6 26 26 H 1.09007 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47179 * 299.99345 * 1 2 3 28 28 H 1.08999 * 109.47644 * 59.99810 * 1 2 3 29 29 H 1.09009 * 109.46903 * 240.00421 * 2 1 3 30 30 H 1.08997 * 109.47533 * 120.00728 * 2 1 3 31 31 H 1.07996 * 120.00547 * 301.48474 * 3 2 1 32 32 H 1.09004 * 109.47490 * 184.83647 * 5 4 3 33 33 H 1.09004 * 109.47278 * 304.83793 * 5 4 3 34 34 H 1.09001 * 109.47500 * 64.83120 * 5 4 3 35 35 H 1.08993 * 110.35580 * 275.41950 * 9 8 6 36 36 H 1.09004 * 110.35272 * 37.71916 * 9 8 6 37 37 H 1.09003 * 111.01942 * 155.29085 * 10 9 8 38 38 H 1.09002 * 111.02212 * 279.17903 * 10 9 8 39 39 H 1.08999 * 109.73703 * 215.68115 * 13 11 10 40 40 H 1.08993 * 109.73654 * 336.31081 * 13 11 10 41 41 H 0.97006 * 119.99593 * 180.02562 * 18 17 15 42 42 H 1.09006 * 110.83316 * 259.07762 * 23 14 13 43 43 H 1.08993 * 109.33081 * 137.58618 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.8210 1.8472 0.9822 5 6 3.1129 0.9502 2.1575 6 6 3.4086 3.1944 0.9214 7 8 4.5530 3.3419 0.5372 8 7 2.6787 4.2652 1.2916 9 6 1.2586 4.2395 1.6837 10 6 1.0643 5.5028 2.5594 11 6 1.9742 6.5238 1.8344 12 1 1.4689 7.0234 1.0078 13 6 2.5732 7.5117 2.8415 14 7 3.9081 7.0328 3.2125 15 6 4.7707 7.6728 4.0619 16 1 4.4847 8.6093 4.5174 17 6 6.0129 7.1178 4.3375 18 7 6.3617 5.9768 3.7820 19 14 7.1899 7.9912 5.4957 20 1 6.5561 8.1330 6.8311 21 1 8.4393 7.1986 5.6219 22 1 7.5100 9.3364 4.9543 23 6 4.1686 5.7486 2.5398 24 6 3.1708 5.6505 1.3691 25 1 3.5928 5.9928 0.4242 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.7517 2.0928 -0.7975 32 1 3.7011 1.4969 2.8946 33 1 2.1752 0.6260 2.6089 34 1 3.6735 0.0788 1.8192 35 1 0.6207 4.2881 0.8012 36 1 1.0409 3.3408 2.2610 37 1 0.0244 5.8295 2.5492 38 1 1.4075 5.3282 3.5791 39 1 2.6497 8.4996 2.3872 40 1 1.9410 7.5626 3.7279 41 1 7.2296 5.5887 3.9749 42 1 4.0195 4.9145 3.2256 43 1 5.1898 5.7414 2.1589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187093104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:23 Heat of formation + Delta-G solvation = -14.332741 kcal Electronic energy + Delta-G solvation = -22657.155719 eV Core-core repulsion = 19509.323046 eV Total energy + Delta-G solvation = -3147.832672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58069 -39.55102 -37.10382 -36.61543 -34.10739 -32.63172 -32.13889 -30.40416 -28.53100 -27.91195 -26.55644 -25.21926 -23.58513 -22.38811 -21.46652 -20.56952 -19.38027 -18.89263 -17.92594 -17.24490 -16.82422 -16.41251 -16.03417 -15.35539 -15.16920 -14.98400 -14.86161 -14.26295 -14.20635 -14.02301 -13.79358 -13.51742 -13.37796 -13.23363 -13.03198 -13.00233 -12.79524 -12.74198 -12.58865 -12.25089 -12.19337 -11.89465 -11.75365 -11.66554 -11.51337 -11.43109 -10.83752 -10.75752 -9.90776 -9.66600 -8.94815 -7.81176 -5.27218 0.83777 1.41270 1.46359 1.53090 1.54266 2.07088 2.46976 3.28338 3.34055 3.59911 3.66412 3.80614 3.96041 4.03617 4.24469 4.29844 4.30739 4.34410 4.46401 4.52043 4.55084 4.67593 4.70012 4.73854 4.81842 4.83632 4.92866 4.99932 5.08287 5.13299 5.16252 5.19407 5.23544 5.40476 5.44295 5.46446 5.53479 5.59697 5.66076 5.76318 6.21326 6.56841 7.02793 7.14096 7.74819 8.36636 9.21176 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.004865 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.692907 B = 5753.641809 C = 6453.419775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.092 4.092 4 C -0.176 4.176 5 C -0.098 4.098 6 C 0.555 3.445 7 O -0.593 6.593 8 N -0.604 5.604 9 C 0.104 3.896 10 C -0.113 4.113 11 C -0.092 4.092 12 H 0.129 0.871 13 C 0.137 3.863 14 N -0.625 5.625 15 C -0.245 4.245 16 H 0.090 0.910 17 C -0.072 4.072 18 N -0.952 5.952 19 Si 0.984 3.016 20 H -0.272 1.272 21 H -0.298 1.298 22 H -0.272 1.272 23 C 0.185 3.815 24 C 0.113 3.887 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.031 0.969 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.037 0.963 41 H 0.243 0.757 42 H -0.021 1.021 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.789 -9.947 -6.596 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.111 4.111 4 C -0.179 4.179 5 C -0.154 4.154 6 C 0.346 3.654 7 O -0.474 6.474 8 N -0.336 5.336 9 C -0.017 4.017 10 C -0.151 4.151 11 C -0.111 4.111 12 H 0.147 0.853 13 C 0.012 3.988 14 N -0.352 5.352 15 C -0.373 4.373 16 H 0.108 0.892 17 C -0.264 4.264 18 N -0.601 5.601 19 Si 0.812 3.188 20 H -0.197 1.197 21 H -0.225 1.225 22 H -0.198 1.198 23 C 0.059 3.941 24 C 0.008 3.992 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.050 0.950 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.052 0.948 42 H -0.003 1.003 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.984 -9.943 -6.725 21.622 hybrid contribution 1.710 0.590 0.683 1.934 sum -16.274 -9.353 -6.042 19.718 Atomic orbital electron populations 1.21676 0.93237 1.02704 1.02428 1.20807 0.97447 0.91418 1.03918 1.23443 0.93311 0.98776 0.95538 1.21285 1.02422 0.92962 1.01251 1.20665 1.03062 0.97794 0.93928 1.19081 0.84688 0.85678 0.75986 1.90809 1.20376 1.86867 1.49329 1.48735 1.13325 1.06160 1.65417 1.22593 0.79725 0.99804 0.99628 1.22805 1.01420 0.93163 0.97710 1.22911 0.94338 0.95238 0.98615 0.85322 1.21258 0.85608 0.96011 0.95931 1.44649 1.14777 1.22209 1.53543 1.19500 0.95391 1.03675 1.18764 0.89181 1.25811 0.99906 0.98114 1.02599 1.70263 1.21178 1.20596 1.48107 0.85068 0.77588 0.77480 0.78702 1.19734 1.22482 1.19818 1.21264 0.96920 0.86000 0.89959 1.22658 0.96719 0.82092 0.97682 0.91552 0.91161 0.92310 0.92234 0.89611 0.90065 0.86736 0.94996 0.87865 0.89767 0.88098 0.89377 0.85407 0.92924 0.94938 0.94478 0.94792 1.00288 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.89 71.98 0.71 -0.75 16 2 C -0.10 -1.38 6.21 29.85 0.19 -1.19 16 3 C -0.09 -1.92 9.22 24.52 0.23 -1.69 16 4 C -0.18 -5.03 4.60 -18.70 -0.09 -5.12 16 5 C -0.10 -2.45 8.55 71.23 0.61 -1.84 16 6 C 0.56 22.30 6.94 86.57 0.60 22.90 16 7 O -0.59 -30.94 17.32 -4.09 -0.07 -31.01 16 8 N -0.60 -21.93 2.85 -788.03 -2.25 -24.17 16 9 C 0.10 2.48 6.70 86.88 0.58 3.06 16 10 C -0.11 -2.83 6.26 31.87 0.20 -2.63 16 11 C -0.09 -2.91 3.87 -9.31 -0.04 -2.94 16 12 H 0.13 3.08 8.14 -2.38 -0.02 3.06 16 13 C 0.14 5.52 6.68 86.45 0.58 6.09 16 14 N -0.63 -33.99 3.39 -697.02 -2.36 -36.35 16 15 C -0.24 -14.36 10.25 84.03 0.86 -13.50 16 16 H 0.09 4.92 7.83 -2.91 -0.02 4.90 16 17 C -0.07 -4.36 5.49 84.86 0.47 -3.89 16 18 N -0.95 -62.86 10.16 21.65 0.22 -62.64 16 19 Si 0.98 48.15 29.55 68.60 2.03 50.18 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 C 0.18 10.28 4.96 86.61 0.43 10.71 16 24 C 0.11 4.78 3.85 46.02 0.18 4.96 16 25 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.08 1.07 5.86 -2.39 -0.01 1.06 16 31 H 0.11 2.32 8.05 -2.91 -0.02 2.30 16 32 H 0.03 1.01 7.99 -2.38 -0.02 0.99 16 33 H 0.10 1.85 7.76 -2.38 -0.02 1.83 16 34 H 0.08 1.85 7.81 -2.39 -0.02 1.83 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.86 7.63 -2.39 -0.02 1.85 16 37 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.65 7.92 -2.39 -0.02 1.63 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.04 1.42 7.77 -2.39 -0.02 1.40 16 41 H 0.24 15.75 8.31 -92.70 -0.77 14.98 16 42 H -0.02 -1.29 7.94 -2.38 -0.02 -1.31 16 43 H 0.04 2.56 6.18 -2.39 -0.01 2.54 16 Total: -1.00 -84.14 342.39 4.04 -80.10 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.97 Total: 9.72 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.50 Total: 14.17 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -4.39 Total: -123.16 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.07 Total: -31.01 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -84.14 4.04 -80.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187093104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.772 kcal (2) G-P(sol) polarization free energy of solvation -84.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds