Wall clock time and date at job start Tue Mar 31 2020 01:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47110 * 120.00137 * 2 1 4 4 C 1.50698 * 120.00224 * 354.42263 * 3 2 1 5 5 C 1.32871 * 120.00008 * 174.43312 * 3 2 1 6 6 C 1.50694 * 120.00116 * 5.71139 * 5 3 2 7 7 C 1.50702 * 109.47047 * 126.06702 * 6 5 3 8 8 O 1.21277 * 120.00193 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00034 * 179.97438 * 7 6 5 10 10 C 1.47024 * 125.64511 * 359.69421 * 9 7 6 11 11 C 1.54340 * 107.26299 * 178.84837 * 10 9 7 12 12 C 1.55151 * 103.01936 * 338.14184 * 11 10 9 13 13 H 1.09007 * 111.00374 * 277.22876 * 12 11 10 14 14 N 1.46498 * 111.03779 * 153.39771 * 12 11 10 15 15 C 1.46501 * 119.99836 * 307.78404 * 14 12 11 16 16 C 1.36940 * 120.00325 * 127.78278 * 14 12 11 17 17 H 1.07999 * 119.99664 * 24.39621 * 16 14 12 18 18 C 1.38812 * 119.99900 * 204.39923 * 16 14 12 19 19 N 1.31613 * 120.00524 * 12.71895 * 18 16 14 20 20 Si 1.86808 * 119.99669 * 192.71391 * 18 16 14 21 21 H 1.48505 * 109.46739 * 90.00377 * 20 18 16 22 22 H 1.48504 * 109.46891 * 210.00002 * 20 18 16 23 23 H 1.48497 * 109.47151 * 330.00222 * 20 18 16 24 24 C 1.47422 * 125.65068 * 180.02562 * 9 7 6 25 25 H 1.07998 * 119.99666 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99559 * 179.72861 * 1 2 3 27 27 H 1.08007 * 119.99516 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46816 * 90.00286 * 4 3 2 29 29 H 1.08998 * 109.47803 * 210.00332 * 4 3 2 30 30 H 1.09004 * 109.46936 * 330.01105 * 4 3 2 31 31 H 1.08001 * 119.99999 * 185.71992 * 5 3 2 32 32 H 1.09008 * 109.47085 * 246.06638 * 6 5 3 33 33 H 1.09003 * 109.47360 * 6.06643 * 6 5 3 34 34 H 1.08997 * 109.88426 * 298.38744 * 10 9 7 35 35 H 1.09003 * 109.88816 * 59.55878 * 10 9 7 36 36 H 1.08996 * 110.84687 * 219.67113 * 11 10 9 37 37 H 1.08998 * 110.66935 * 96.52466 * 11 10 9 38 38 H 1.09000 * 109.47174 * 91.02263 * 15 14 12 39 39 H 1.09007 * 109.46891 * 211.01993 * 15 14 12 40 40 H 1.08996 * 109.47080 * 331.01781 * 15 14 12 41 41 H 0.97001 * 120.00368 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.36579 * 322.93120 * 24 9 7 43 43 H 1.08998 * 110.36589 * 85.25281 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3163 2.5760 -0.1268 5 6 3.3883 1.2767 0.1116 6 6 4.1474 -0.0251 0.1087 7 6 5.2159 0.0188 -0.9532 8 8 5.3483 1.0099 -1.6396 9 7 6.0250 -1.0428 -1.1394 10 6 5.9795 -2.2990 -0.3767 11 6 7.0675 -3.2270 -0.9573 12 6 7.2934 -2.6528 -2.3809 13 1 6.5461 -3.0316 -3.0781 14 7 8.6476 -2.9453 -2.8571 15 6 9.8058 -2.5991 -2.0295 16 6 8.8309 -3.5422 -4.0758 17 1 8.0758 -3.4480 -4.8422 18 6 9.9871 -4.2684 -4.3261 19 7 10.7860 -4.5967 -3.3331 20 14 10.4091 -4.7798 -6.0726 21 1 11.2318 -3.7223 -6.7129 22 1 11.1735 -6.0527 -6.0445 23 1 9.1574 -4.9711 -6.8485 24 6 7.1067 -1.1343 -2.1368 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5399 -0.9353 -0.0044 27 1 1.8687 -0.9354 0.0004 28 1 1.0495 2.9399 0.8655 29 1 1.9480 3.3110 -0.6256 30 1 0.4101 2.4189 -0.7119 31 1 3.9205 2.2118 0.2046 32 1 4.6102 -0.1781 1.0837 33 1 3.4609 -0.8456 -0.1004 34 1 6.1816 -2.1011 0.6759 35 1 5.0002 -2.7646 -0.4872 36 1 6.7125 -4.2563 -1.0085 37 1 7.9815 -3.1647 -0.3668 38 1 10.0616 -3.4445 -1.3907 39 1 10.6532 -2.3599 -2.6722 40 1 9.5646 -1.7355 -1.4099 41 1 11.5938 -5.1045 -3.5080 42 1 6.8143 -0.6348 -3.0605 43 1 8.0242 -0.6976 -1.7425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191791006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:42 Heat of formation + Delta-G solvation = 24.810610 kcal Electronic energy + Delta-G solvation = -21496.757026 eV Core-core repulsion = 18350.621736 eV Total energy + Delta-G solvation = -3146.135289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.84213 -37.74207 -36.79597 -34.80563 -32.26130 -31.56132 -30.20845 -29.65794 -27.95315 -26.08454 -25.58176 -23.33886 -22.30208 -21.94638 -19.34663 -19.08439 -17.67368 -17.06440 -16.97396 -16.11094 -15.65364 -15.23445 -14.88433 -14.40522 -13.82869 -13.62337 -13.40331 -13.36786 -12.82650 -12.65780 -12.58840 -12.49781 -12.40931 -12.07278 -11.87826 -11.68496 -11.34487 -10.96240 -10.83362 -10.76520 -10.63652 -10.51231 -10.48592 -10.25430 -9.93096 -9.87971 -9.62649 -8.60518 -8.37972 -8.32403 -6.81217 -5.79929 -3.27300 1.18519 2.79785 2.84104 3.31237 3.36241 3.43131 3.44236 4.44813 4.50341 4.68906 4.70933 4.91436 5.01902 5.13271 5.29575 5.33015 5.34060 5.36675 5.46675 5.51030 5.52078 5.56393 5.61289 5.77297 5.85680 5.90636 6.01596 6.20456 6.27311 6.29967 6.38007 6.54052 6.55764 6.63740 6.77018 6.77939 6.86862 7.31315 7.64408 7.76312 7.80292 8.33073 8.38955 9.16628 9.78526 10.27900 11.25658 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033430 B = 0.003155 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.362360 B = 8871.655719 C = 8940.720126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.114 4.114 5 C -0.112 4.112 6 C -0.115 4.115 7 C 0.528 3.472 8 O -0.545 6.545 9 N -0.615 5.615 10 C 0.102 3.898 11 C -0.151 4.151 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.585 5.585 15 C 0.160 3.840 16 C -0.262 4.262 17 H 0.069 0.931 18 C 0.006 3.994 19 N -0.905 5.905 20 Si 0.907 3.093 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.085 3.915 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.048 0.952 40 H 0.000 1.000 41 H 0.254 0.746 42 H 0.071 0.929 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.148 7.271 10.308 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.140 4.140 3 C -0.116 4.116 4 C -0.171 4.171 5 C -0.130 4.130 6 C -0.154 4.154 7 C 0.316 3.684 8 O -0.423 6.423 9 N -0.349 5.349 10 C -0.021 4.021 11 C -0.191 4.191 12 C 0.062 3.938 13 H 0.096 0.904 14 N -0.305 5.305 15 C 0.015 3.985 16 C -0.391 4.391 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.040 4.040 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.018 0.982 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.918 7.746 9.923 20.294 hybrid contribution 0.415 -0.496 -0.762 1.000 sum -15.503 7.251 9.160 19.412 Atomic orbital electron populations 1.24391 0.95694 1.01957 1.00386 1.22008 0.95370 0.96429 1.00242 1.20541 0.94047 0.94391 1.02593 1.20766 1.00182 0.94331 1.01791 1.22831 0.93736 0.97857 0.98591 1.20827 0.97092 0.98383 0.99137 1.20116 0.81679 0.81918 0.84693 1.90687 1.71427 1.31801 1.48419 1.48528 1.34120 1.15137 1.37087 1.22069 1.00046 0.84722 0.95295 1.23197 0.97723 0.98496 0.99710 1.21422 0.89278 0.90228 0.92842 0.90408 1.43799 0.98647 1.68892 1.19147 1.20790 0.89225 0.94711 0.93745 1.19230 1.04799 1.26007 0.89057 0.91281 1.25053 0.98994 0.97711 0.97531 1.70058 1.14568 1.40958 1.29293 0.86224 0.78243 0.77678 0.84194 1.21381 1.21704 1.20388 1.23006 0.88808 1.00896 0.91257 0.88173 0.88184 0.86498 0.91701 0.91493 0.91605 0.86228 0.88131 0.88117 0.92029 0.91917 0.90482 0.90502 0.95382 0.93342 0.98168 0.93623 0.91052 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 14.07 28.88 0.41 -1.10 16 2 C -0.12 -1.16 9.31 -37.83 -0.35 -1.51 16 3 C -0.12 -1.21 5.98 -102.88 -0.61 -1.82 16 4 C -0.11 -0.99 9.38 36.00 0.34 -0.65 16 5 C -0.11 -1.28 8.43 -36.16 -0.30 -1.59 16 6 C -0.12 -1.29 5.14 -29.04 -0.15 -1.44 16 7 C 0.53 8.32 7.84 -10.98 -0.09 8.24 16 8 O -0.55 -10.71 16.29 5.56 0.09 -10.62 16 9 N -0.61 -9.72 3.33 -170.50 -0.57 -10.28 16 10 C 0.10 1.33 6.49 -3.05 -0.02 1.31 16 11 C -0.15 -2.46 6.50 -24.89 -0.16 -2.62 16 12 C 0.17 3.42 3.54 -65.78 -0.23 3.19 16 13 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 14 N -0.58 -14.17 2.95 -171.02 -0.51 -14.68 16 15 C 0.16 3.80 7.59 59.85 0.45 4.26 16 16 C -0.26 -7.03 9.59 -15.06 -0.14 -7.17 16 17 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 18 C 0.01 0.16 5.07 -17.43 -0.09 0.08 16 19 N -0.90 -25.73 10.81 55.49 0.60 -25.13 16 20 Si 0.91 21.54 29.57 -169.99 -5.03 16.52 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.08 1.58 6.48 -2.52 -0.02 1.56 16 25 H 0.10 0.72 6.31 -52.49 -0.33 0.39 16 26 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 27 H 0.12 1.01 5.82 -52.48 -0.31 0.71 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.07 0.51 6.67 -51.93 -0.35 0.17 16 31 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.10 0.98 5.32 -51.93 -0.28 0.71 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.33 7.03 -51.93 -0.37 0.97 16 38 H 0.03 0.71 7.52 -51.93 -0.39 0.32 16 39 H 0.05 1.26 7.15 -51.93 -0.37 0.89 16 40 H 0.00 0.00 6.40 -51.93 -0.33 -0.33 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 43 H 0.07 1.32 6.38 -51.93 -0.33 0.99 16 LS Contribution 345.34 15.07 5.20 5.20 Total: -1.00 -31.02 345.34 -7.98 -39.01 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.81 Total: -0.73 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.97 Total: 0.72 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.47 Total: -50.09 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.02 -7.98 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191791006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.816 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds