Wall clock time and date at job start Tue Mar 31 2020 01:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32874 * 1 3 3 C 1.47110 * 120.00137 * 2 1 4 4 C 1.50698 * 120.00224 * 354.42263 * 3 2 1 5 5 C 1.32871 * 120.00008 * 174.43312 * 3 2 1 6 6 C 1.50694 * 120.00116 * 5.71139 * 5 3 2 7 7 C 1.50702 * 109.47047 * 126.06702 * 6 5 3 8 8 O 1.21277 * 120.00193 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00034 * 179.97438 * 7 6 5 10 10 C 1.47024 * 125.64511 * 359.69421 * 9 7 6 11 11 C 1.54340 * 107.26299 * 178.84837 * 10 9 7 12 12 C 1.55151 * 103.01936 * 338.14184 * 11 10 9 13 13 H 1.09007 * 111.00374 * 277.22876 * 12 11 10 14 14 N 1.46498 * 111.03779 * 153.39771 * 12 11 10 15 15 C 1.46501 * 119.99836 * 307.78404 * 14 12 11 16 16 C 1.36940 * 120.00325 * 127.78278 * 14 12 11 17 17 H 1.07999 * 119.99664 * 24.39621 * 16 14 12 18 18 C 1.38812 * 119.99900 * 204.39923 * 16 14 12 19 19 N 1.31613 * 120.00524 * 12.71895 * 18 16 14 20 20 Si 1.86808 * 119.99669 * 192.71391 * 18 16 14 21 21 H 1.48505 * 109.46739 * 90.00377 * 20 18 16 22 22 H 1.48504 * 109.46891 * 210.00002 * 20 18 16 23 23 H 1.48497 * 109.47151 * 330.00222 * 20 18 16 24 24 C 1.47422 * 125.65068 * 180.02562 * 9 7 6 25 25 H 1.07998 * 119.99666 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99559 * 179.72861 * 1 2 3 27 27 H 1.08007 * 119.99516 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46816 * 90.00286 * 4 3 2 29 29 H 1.08998 * 109.47803 * 210.00332 * 4 3 2 30 30 H 1.09004 * 109.46936 * 330.01105 * 4 3 2 31 31 H 1.08001 * 119.99999 * 185.71992 * 5 3 2 32 32 H 1.09008 * 109.47085 * 246.06638 * 6 5 3 33 33 H 1.09003 * 109.47360 * 6.06643 * 6 5 3 34 34 H 1.08997 * 109.88426 * 298.38744 * 10 9 7 35 35 H 1.09003 * 109.88816 * 59.55878 * 10 9 7 36 36 H 1.08996 * 110.84687 * 219.67113 * 11 10 9 37 37 H 1.08998 * 110.66935 * 96.52466 * 11 10 9 38 38 H 1.09000 * 109.47174 * 91.02263 * 15 14 12 39 39 H 1.09007 * 109.46891 * 211.01993 * 15 14 12 40 40 H 1.08996 * 109.47080 * 331.01781 * 15 14 12 41 41 H 0.97001 * 120.00368 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.36579 * 322.93120 * 24 9 7 43 43 H 1.08998 * 110.36589 * 85.25281 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3163 2.5760 -0.1268 5 6 3.3883 1.2767 0.1116 6 6 4.1474 -0.0251 0.1087 7 6 5.2159 0.0188 -0.9532 8 8 5.3483 1.0099 -1.6396 9 7 6.0250 -1.0428 -1.1394 10 6 5.9795 -2.2990 -0.3767 11 6 7.0675 -3.2270 -0.9573 12 6 7.2934 -2.6528 -2.3809 13 1 6.5461 -3.0316 -3.0781 14 7 8.6476 -2.9453 -2.8571 15 6 9.8058 -2.5991 -2.0295 16 6 8.8309 -3.5422 -4.0758 17 1 8.0758 -3.4480 -4.8422 18 6 9.9871 -4.2684 -4.3261 19 7 10.7860 -4.5967 -3.3331 20 14 10.4091 -4.7798 -6.0726 21 1 11.2318 -3.7223 -6.7129 22 1 11.1735 -6.0527 -6.0445 23 1 9.1574 -4.9711 -6.8485 24 6 7.1067 -1.1343 -2.1368 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5399 -0.9353 -0.0044 27 1 1.8687 -0.9354 0.0004 28 1 1.0495 2.9399 0.8655 29 1 1.9480 3.3110 -0.6256 30 1 0.4101 2.4189 -0.7119 31 1 3.9205 2.2118 0.2046 32 1 4.6102 -0.1781 1.0837 33 1 3.4609 -0.8456 -0.1004 34 1 6.1816 -2.1011 0.6759 35 1 5.0002 -2.7646 -0.4872 36 1 6.7125 -4.2563 -1.0085 37 1 7.9815 -3.1647 -0.3668 38 1 10.0616 -3.4445 -1.3907 39 1 10.6532 -2.3599 -2.6722 40 1 9.5646 -1.7355 -1.4099 41 1 11.5938 -5.1045 -3.5080 42 1 6.8143 -0.6348 -3.0605 43 1 8.0242 -0.6976 -1.7425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191791006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:42 Heat of formation + Delta-G solvation = 7.168471 kcal Electronic energy + Delta-G solvation = -21497.522046 eV Core-core repulsion = 18350.621736 eV Total energy + Delta-G solvation = -3146.900310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11754 -39.06312 -37.72669 -36.54183 -33.60146 -32.84410 -31.40701 -30.76300 -29.35063 -28.06630 -26.61649 -24.87490 -23.73081 -22.68502 -20.97205 -20.26275 -18.95491 -18.41614 -18.15310 -17.57281 -16.71679 -16.56374 -16.18212 -15.75488 -15.20857 -15.02219 -14.73437 -14.40730 -14.30619 -14.17960 -13.76337 -13.49798 -13.38803 -13.21892 -12.96066 -12.94134 -12.83469 -12.50118 -12.44214 -12.38292 -12.15159 -12.09827 -11.85472 -11.49247 -11.45126 -11.32016 -10.91515 -10.64947 -9.66012 -9.11150 -8.78333 -7.86632 -5.35740 0.45382 1.46404 1.48382 1.56419 1.62832 1.92595 2.25285 2.50791 3.26647 3.54280 3.62748 3.75417 3.93211 4.00907 4.05865 4.20352 4.22891 4.34294 4.44682 4.46035 4.58234 4.67826 4.70109 4.77757 4.80448 4.82395 4.90680 4.95518 5.01667 5.16222 5.21328 5.23596 5.30300 5.42484 5.51003 5.60379 5.62336 5.68126 5.83878 6.05598 6.30977 6.58734 7.11784 7.15979 7.82132 8.26860 9.17228 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033430 B = 0.003155 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.362360 B = 8871.655719 C = 8940.720126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.149 4.149 3 C -0.108 4.108 4 C -0.118 4.118 5 C -0.143 4.143 6 C -0.100 4.100 7 C 0.522 3.478 8 O -0.593 6.593 9 N -0.615 5.615 10 C 0.108 3.892 11 C -0.142 4.142 12 C 0.166 3.834 13 H 0.072 0.928 14 N -0.602 5.602 15 C 0.178 3.822 16 C -0.271 4.271 17 H 0.068 0.932 18 C -0.045 4.045 19 N -0.933 5.933 20 Si 0.968 3.032 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.269 1.269 24 C 0.096 3.904 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.010 0.990 39 H 0.017 0.983 40 H 0.025 0.975 41 H 0.250 0.750 42 H 0.048 0.952 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.738 6.795 11.489 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.108 4.108 4 C -0.174 4.174 5 C -0.162 4.162 6 C -0.138 4.138 7 C 0.313 3.687 8 O -0.474 6.474 9 N -0.349 5.349 10 C -0.014 4.014 11 C -0.181 4.181 12 C 0.057 3.943 13 H 0.090 0.910 14 N -0.323 5.323 15 C 0.033 3.967 16 C -0.401 4.401 17 H 0.086 0.914 18 C -0.241 4.241 19 N -0.579 5.579 20 Si 0.796 3.204 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.193 1.193 24 C -0.029 4.029 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.143 0.857 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.036 0.964 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.555 7.267 11.134 22.827 hybrid contribution 1.078 -0.277 -1.129 1.585 sum -17.478 6.990 10.005 21.317 Atomic orbital electron populations 1.24662 0.95352 1.03164 0.97510 1.22113 0.96009 0.96187 1.02375 1.20836 0.93953 0.95609 1.00369 1.20836 1.00244 0.93580 1.02772 1.22773 0.94291 0.97601 1.01490 1.20807 0.95722 0.98977 0.98331 1.21028 0.81903 0.80829 0.84914 1.90664 1.72737 1.33596 1.50387 1.48605 1.33295 1.16396 1.36590 1.22221 1.00371 0.82628 0.96141 1.23040 0.98657 0.99638 0.96801 1.21539 0.86879 0.91047 0.94879 0.90957 1.43953 1.00426 1.69044 1.18874 1.20488 0.88431 0.94807 0.92933 1.19518 1.04804 1.25437 0.90298 0.91393 1.25759 0.99128 0.98332 1.00898 1.70196 1.14827 1.41943 1.30897 0.85264 0.78048 0.76877 0.80213 1.21580 1.21859 1.19326 1.22599 0.89456 0.99537 0.91334 0.87445 0.86577 0.85672 0.90216 0.92287 0.90603 0.87668 0.85578 0.85982 0.88829 0.88625 0.89683 0.91620 0.97194 0.96405 0.95635 0.94090 0.93295 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 14.07 66.64 0.94 -1.21 16 2 C -0.15 -2.37 9.31 23.42 0.22 -2.15 16 3 C -0.11 -2.04 5.98 -18.71 -0.11 -2.15 16 4 C -0.12 -1.84 9.38 71.24 0.67 -1.17 16 5 C -0.14 -3.11 8.43 24.51 0.21 -2.91 16 6 C -0.10 -1.98 5.14 29.10 0.15 -1.83 16 7 C 0.52 15.81 7.84 87.66 0.69 16.50 16 8 O -0.59 -23.53 16.29 -3.02 -0.05 -23.58 16 9 N -0.62 -18.41 3.33 -811.73 -2.70 -21.11 16 10 C 0.11 2.44 6.49 86.73 0.56 3.00 16 11 C -0.14 -4.35 6.50 31.79 0.21 -4.14 16 12 C 0.17 6.50 3.54 46.39 0.16 6.66 16 13 H 0.07 2.89 7.96 -2.38 -0.02 2.87 16 14 N -0.60 -29.59 2.95 -694.99 -2.05 -31.64 16 15 C 0.18 8.67 7.59 127.77 0.97 9.64 16 16 C -0.27 -14.73 9.59 84.03 0.81 -13.93 16 17 H 0.07 3.63 7.86 -2.91 -0.02 3.61 16 18 C -0.05 -2.51 5.07 84.86 0.43 -2.08 16 19 N -0.93 -54.17 10.81 21.65 0.23 -53.94 16 20 Si 0.97 44.79 29.57 68.60 2.03 46.82 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 C 0.10 3.60 6.48 86.86 0.56 4.16 16 25 H 0.11 1.18 6.31 -2.91 -0.02 1.16 16 26 H 0.12 1.10 8.06 -2.91 -0.02 1.08 16 27 H 0.13 1.72 5.82 -2.91 -0.02 1.70 16 28 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.01 8.07 -2.39 -0.02 0.99 16 30 H 0.08 1.02 6.67 -2.38 -0.02 1.00 16 31 H 0.11 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.12 1.91 5.32 -2.39 -0.01 1.89 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.07 2.18 7.03 -2.39 -0.02 2.17 16 38 H 0.01 0.51 7.52 -2.39 -0.02 0.49 16 39 H 0.02 0.94 7.15 -2.38 -0.02 0.92 16 40 H 0.03 1.08 6.40 -2.39 -0.02 1.07 16 41 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 43 H 0.05 2.14 6.38 -2.39 -0.02 2.12 16 Total: -1.00 -69.16 345.34 4.90 -64.26 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.98 Total: 10.79 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.46 Total: 8.40 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -4.52 Total: -106.69 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.16 4.90 -64.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191791006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.427 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds