Wall clock time and date at job start Tue Mar 31 2020 01:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47120 * 119.99727 * 2 1 4 4 C 1.50703 * 120.00047 * 359.97438 * 3 2 1 5 5 C 1.32877 * 119.99959 * 180.02562 * 3 2 1 6 6 C 1.50700 * 119.99996 * 185.58917 * 5 3 2 7 7 C 1.50700 * 109.47118 * 125.51146 * 6 5 3 8 8 O 1.21281 * 120.00037 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99698 * 179.97438 * 7 6 5 10 10 C 1.47015 * 125.65430 * 0.03072 * 9 7 6 11 11 C 1.54322 * 107.27714 * 178.90521 * 10 9 7 12 12 C 1.55156 * 102.94013 * 337.80614 * 11 10 9 13 13 H 1.09003 * 111.00500 * 277.38928 * 12 11 10 14 14 N 1.46496 * 111.00533 * 153.57467 * 12 11 10 15 15 C 1.46500 * 120.00075 * 304.58378 * 14 12 11 16 16 C 1.36936 * 120.00054 * 124.58412 * 14 12 11 17 17 H 1.07996 * 120.00262 * 18.08218 * 16 14 12 18 18 C 1.38810 * 120.00143 * 198.08915 * 16 14 12 19 19 N 1.31626 * 119.99987 * 17.83631 * 18 16 14 20 20 Si 1.86800 * 120.00206 * 197.83715 * 18 16 14 21 21 H 1.48500 * 109.47156 * 59.99884 * 20 18 16 22 22 H 1.48503 * 109.47306 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47379 * 300.00003 * 20 18 16 24 24 C 1.47472 * 125.62370 * 179.97438 * 9 7 6 25 25 H 1.08003 * 120.00336 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99996 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00036 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46730 * 214.51836 * 4 3 2 29 29 H 1.08998 * 109.46981 * 334.52523 * 4 3 2 30 30 H 1.08998 * 109.46647 * 94.52599 * 4 3 2 31 31 H 1.07998 * 119.99596 * 5.58056 * 5 3 2 32 32 H 1.09001 * 109.46714 * 5.51496 * 6 5 3 33 33 H 1.08997 * 109.46963 * 245.51402 * 6 5 3 34 34 H 1.09006 * 109.88115 * 59.48162 * 10 9 7 35 35 H 1.09005 * 110.01077 * 298.39318 * 10 9 7 36 36 H 1.09000 * 110.71887 * 219.44577 * 11 10 9 37 37 H 1.08999 * 110.87226 * 96.23937 * 11 10 9 38 38 H 1.08993 * 109.47028 * 95.17302 * 15 14 12 39 39 H 1.09004 * 109.46927 * 215.17344 * 15 14 12 40 40 H 1.09003 * 109.47017 * 335.16679 * 15 14 12 41 41 H 0.96998 * 119.99851 * 180.02562 * 19 18 16 42 42 H 1.09006 * 110.35007 * 85.32597 * 24 9 7 43 43 H 1.08989 * 110.40908 * 322.98870 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3106 2.5792 -0.0006 5 6 3.3930 1.2742 -0.0005 6 6 4.1465 2.5731 0.1266 7 6 5.1128 2.4825 1.2794 8 8 5.1831 1.4634 1.9331 9 7 5.8996 3.5337 1.5833 10 6 5.9176 4.8230 0.8772 11 6 6.9490 5.7221 1.5909 12 6 7.0444 5.0876 3.0036 13 1 6.2354 5.4380 3.6447 14 7 8.3486 5.3578 3.6136 15 6 9.5779 4.9810 2.9115 16 6 8.4187 5.9625 4.8402 17 1 7.5524 5.9782 5.4849 18 6 9.6032 6.5555 5.2551 19 7 10.5343 6.8530 4.3735 20 14 9.8760 6.9314 7.0644 21 1 9.8126 5.6709 7.8469 22 1 11.2101 7.5585 7.2441 23 1 8.8224 7.8632 7.5408 24 6 6.8843 3.5809 2.6801 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8687 -0.9353 -0.0004 28 1 1.8625 3.3171 -0.5829 29 1 0.3257 2.4299 -0.4429 30 1 1.1988 2.9346 1.0238 31 1 3.9329 0.3433 -0.0919 32 1 3.4423 3.3855 0.3058 33 1 4.6966 2.7656 -0.7945 34 1 4.9307 5.2837 0.9215 35 1 6.2111 4.6751 -0.1621 36 1 6.5882 6.7488 1.6528 37 1 7.9137 5.6836 1.0850 38 1 9.9552 5.8382 2.3540 39 1 10.3266 4.6606 3.6360 40 1 9.3665 4.1636 2.2220 41 1 11.3621 7.2671 4.6634 42 1 7.8353 3.1595 2.3541 43 1 6.5091 3.0437 3.5510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191791007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:45 Heat of formation + Delta-G solvation = 25.264405 kcal Electronic energy + Delta-G solvation = -21459.656678 eV Core-core repulsion = 18313.541067 eV Total energy + Delta-G solvation = -3146.115611 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.85246 -37.74545 -36.79229 -34.82486 -32.67270 -31.60531 -29.84252 -29.10281 -27.87229 -26.53241 -26.06834 -23.58031 -22.31166 -21.14643 -19.33313 -18.91968 -17.98029 -17.10552 -17.02951 -16.26964 -15.69301 -15.19378 -14.77191 -14.25074 -14.04308 -13.65526 -13.42019 -13.34766 -13.12293 -12.62892 -12.53039 -12.49038 -12.35694 -11.91377 -11.76437 -11.56495 -11.36278 -11.03156 -10.97807 -10.77841 -10.67822 -10.52119 -10.48962 -10.28693 -9.91306 -9.87383 -9.63879 -8.59440 -8.37601 -8.32578 -6.88358 -5.79183 -3.20719 1.18225 2.79423 2.84793 3.30018 3.37513 3.43437 3.45678 4.45892 4.51167 4.66765 4.72196 5.00837 5.04606 5.11790 5.13666 5.27766 5.29859 5.34060 5.44507 5.49740 5.52974 5.60267 5.67164 5.75678 5.81831 5.88547 5.99676 6.19024 6.28218 6.31519 6.36738 6.51421 6.53724 6.62506 6.74710 6.78235 6.85065 7.32888 7.64312 7.76565 7.78962 8.29873 8.37499 9.16074 9.79812 10.26409 11.26239 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036552 B = 0.003076 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.841449 B = 9101.136540 C = 9288.471413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.112 4.112 6 C -0.114 4.114 7 C 0.528 3.472 8 O -0.545 6.545 9 N -0.614 5.614 10 C 0.102 3.898 11 C -0.152 4.152 12 C 0.174 3.826 13 H 0.078 0.922 14 N -0.586 5.586 15 C 0.159 3.841 16 C -0.261 4.261 17 H 0.071 0.929 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.905 3.095 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.085 3.915 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.045 0.955 40 H 0.002 0.998 41 H 0.254 0.746 42 H 0.068 0.932 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.309 -6.711 -12.067 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.129 4.129 3 C -0.116 4.116 4 C -0.179 4.179 5 C -0.131 4.131 6 C -0.153 4.153 7 C 0.316 3.684 8 O -0.423 6.423 9 N -0.349 5.349 10 C -0.021 4.021 11 C -0.192 4.192 12 C 0.063 3.937 13 H 0.096 0.904 14 N -0.306 5.306 15 C 0.015 3.985 16 C -0.390 4.390 17 H 0.089 0.911 18 C -0.195 4.195 19 N -0.549 5.549 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.039 4.039 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.097 -7.211 -11.683 20.406 hybrid contribution 0.339 0.280 0.859 0.965 sum -14.758 -6.931 -10.824 19.570 Atomic orbital electron populations 1.24382 0.95698 1.01934 1.01005 1.21860 0.95288 0.96095 0.99663 1.20537 0.93879 0.94360 1.02784 1.20892 1.00112 0.94562 1.02348 1.22820 0.93861 0.97866 0.98521 1.20785 0.98183 0.98226 0.98100 1.20093 0.80616 0.82298 0.85363 1.90694 1.68935 1.29736 1.52922 1.48528 1.39182 1.13849 1.33311 1.22060 1.00081 0.83957 0.96031 1.23230 0.98383 0.98699 0.98935 1.21394 0.90156 0.90270 0.91899 0.90410 1.43853 0.99068 1.68230 1.19473 1.20823 0.87621 0.95292 0.94790 1.19195 0.98242 1.30178 0.91365 0.91095 1.24904 0.97938 0.98735 0.97961 1.70106 1.08425 1.44556 1.31804 0.86329 0.77080 0.78029 0.85094 1.21033 1.21634 1.20916 1.23007 0.91127 1.00910 0.88900 0.88083 0.88259 0.86849 0.91328 0.91544 0.91360 0.86409 0.88099 0.88085 0.91893 0.92035 0.90506 0.90502 0.95041 0.93608 0.97924 0.93615 0.91359 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 14.11 28.88 0.41 -1.17 16 2 C -0.11 -1.08 9.83 -37.83 -0.37 -1.45 16 3 C -0.12 -1.20 5.98 -102.87 -0.62 -1.81 16 4 C -0.12 -1.03 8.55 36.01 0.31 -0.72 16 5 C -0.11 -1.28 8.45 -36.16 -0.31 -1.59 16 6 C -0.11 -1.25 4.97 -29.03 -0.14 -1.39 16 7 C 0.53 8.24 7.84 -10.99 -0.09 8.16 16 8 O -0.55 -10.67 16.29 5.56 0.09 -10.57 16 9 N -0.61 -9.61 3.33 -170.47 -0.57 -10.17 16 10 C 0.10 1.31 6.49 -3.07 -0.02 1.29 16 11 C -0.15 -2.45 6.52 -24.90 -0.16 -2.61 16 12 C 0.17 3.40 3.54 -65.77 -0.23 3.16 16 13 H 0.08 1.54 7.92 -51.93 -0.41 1.13 16 14 N -0.59 -14.16 2.97 -171.02 -0.51 -14.66 16 15 C 0.16 3.79 7.68 59.85 0.46 4.24 16 16 C -0.26 -6.99 9.65 -15.06 -0.15 -7.13 16 17 H 0.07 1.86 7.84 -52.49 -0.41 1.45 16 18 C 0.00 0.09 5.01 -17.43 -0.09 0.00 16 19 N -0.90 -25.75 10.71 55.49 0.59 -25.15 16 20 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C 0.08 1.57 6.46 -2.49 -0.02 1.55 16 25 H 0.10 0.74 6.07 -52.48 -0.32 0.42 16 26 H 0.10 0.67 8.06 -52.48 -0.42 0.25 16 27 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.07 0.50 6.66 -51.93 -0.35 0.15 16 29 H 0.07 0.47 6.21 -51.93 -0.32 0.15 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.12 1.41 8.05 -52.49 -0.42 0.99 16 32 H 0.10 0.94 5.77 -51.93 -0.30 0.65 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.32 7.16 -51.93 -0.37 0.95 16 38 H 0.03 0.80 7.45 -51.93 -0.39 0.41 16 39 H 0.05 1.19 7.14 -51.93 -0.37 0.82 16 40 H 0.00 0.05 6.24 -51.93 -0.32 -0.28 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.07 1.33 6.22 -51.93 -0.32 1.01 16 43 H 0.07 1.43 8.04 -51.94 -0.42 1.01 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -31.06 345.19 -8.05 -39.11 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.82 Total: -0.83 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.01 Total: 0.53 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.48 Total: -49.99 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.06 -8.05 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191791007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.376 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds