Wall clock time and date at job start Tue Mar 31 2020 01:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47120 * 119.99727 * 2 1 4 4 C 1.50703 * 120.00047 * 359.97438 * 3 2 1 5 5 C 1.32877 * 119.99959 * 180.02562 * 3 2 1 6 6 C 1.50700 * 119.99996 * 185.58917 * 5 3 2 7 7 C 1.50700 * 109.47118 * 125.51146 * 6 5 3 8 8 O 1.21281 * 120.00037 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99698 * 179.97438 * 7 6 5 10 10 C 1.47015 * 125.65430 * 0.03072 * 9 7 6 11 11 C 1.54322 * 107.27714 * 178.90521 * 10 9 7 12 12 C 1.55156 * 102.94013 * 337.80614 * 11 10 9 13 13 H 1.09003 * 111.00500 * 277.38928 * 12 11 10 14 14 N 1.46496 * 111.00533 * 153.57467 * 12 11 10 15 15 C 1.46500 * 120.00075 * 304.58378 * 14 12 11 16 16 C 1.36936 * 120.00054 * 124.58412 * 14 12 11 17 17 H 1.07996 * 120.00262 * 18.08218 * 16 14 12 18 18 C 1.38810 * 120.00143 * 198.08915 * 16 14 12 19 19 N 1.31626 * 119.99987 * 17.83631 * 18 16 14 20 20 Si 1.86800 * 120.00206 * 197.83715 * 18 16 14 21 21 H 1.48500 * 109.47156 * 59.99884 * 20 18 16 22 22 H 1.48503 * 109.47306 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47379 * 300.00003 * 20 18 16 24 24 C 1.47472 * 125.62370 * 179.97438 * 9 7 6 25 25 H 1.08003 * 120.00336 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99996 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.00036 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46730 * 214.51836 * 4 3 2 29 29 H 1.08998 * 109.46981 * 334.52523 * 4 3 2 30 30 H 1.08998 * 109.46647 * 94.52599 * 4 3 2 31 31 H 1.07998 * 119.99596 * 5.58056 * 5 3 2 32 32 H 1.09001 * 109.46714 * 5.51496 * 6 5 3 33 33 H 1.08997 * 109.46963 * 245.51402 * 6 5 3 34 34 H 1.09006 * 109.88115 * 59.48162 * 10 9 7 35 35 H 1.09005 * 110.01077 * 298.39318 * 10 9 7 36 36 H 1.09000 * 110.71887 * 219.44577 * 11 10 9 37 37 H 1.08999 * 110.87226 * 96.23937 * 11 10 9 38 38 H 1.08993 * 109.47028 * 95.17302 * 15 14 12 39 39 H 1.09004 * 109.46927 * 215.17344 * 15 14 12 40 40 H 1.09003 * 109.47017 * 335.16679 * 15 14 12 41 41 H 0.96998 * 119.99851 * 180.02562 * 19 18 16 42 42 H 1.09006 * 110.35007 * 85.32597 * 24 9 7 43 43 H 1.08989 * 110.40908 * 322.98870 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3106 2.5792 -0.0006 5 6 3.3930 1.2742 -0.0005 6 6 4.1465 2.5731 0.1266 7 6 5.1128 2.4825 1.2794 8 8 5.1831 1.4634 1.9331 9 7 5.8996 3.5337 1.5833 10 6 5.9176 4.8230 0.8772 11 6 6.9490 5.7221 1.5909 12 6 7.0444 5.0876 3.0036 13 1 6.2354 5.4380 3.6447 14 7 8.3486 5.3578 3.6136 15 6 9.5779 4.9810 2.9115 16 6 8.4187 5.9625 4.8402 17 1 7.5524 5.9782 5.4849 18 6 9.6032 6.5555 5.2551 19 7 10.5343 6.8530 4.3735 20 14 9.8760 6.9314 7.0644 21 1 9.8126 5.6709 7.8469 22 1 11.2101 7.5585 7.2441 23 1 8.8224 7.8632 7.5408 24 6 6.8843 3.5809 2.6801 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8687 -0.9353 -0.0004 28 1 1.8625 3.3171 -0.5829 29 1 0.3257 2.4299 -0.4429 30 1 1.1988 2.9346 1.0238 31 1 3.9329 0.3433 -0.0919 32 1 3.4423 3.3855 0.3058 33 1 4.6966 2.7656 -0.7945 34 1 4.9307 5.2837 0.9215 35 1 6.2111 4.6751 -0.1621 36 1 6.5882 6.7488 1.6528 37 1 7.9137 5.6836 1.0850 38 1 9.9552 5.8382 2.3540 39 1 10.3266 4.6606 3.6360 40 1 9.3665 4.1636 2.2220 41 1 11.3621 7.2671 4.6634 42 1 7.8353 3.1595 2.3541 43 1 6.5091 3.0437 3.5510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191791007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:45 Heat of formation + Delta-G solvation = 7.509074 kcal Electronic energy + Delta-G solvation = -21460.426607 eV Core-core repulsion = 18313.541067 eV Total energy + Delta-G solvation = -3146.885540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11499 -39.06410 -37.71011 -36.55144 -33.71204 -33.18052 -31.32593 -30.08643 -29.04000 -28.09019 -27.40791 -25.14750 -23.77995 -21.99604 -20.93829 -20.03260 -18.96388 -18.76379 -18.15272 -17.61071 -16.90038 -16.39096 -16.35862 -15.57838 -15.19336 -14.93508 -14.79882 -14.40171 -14.30647 -14.27415 -13.80754 -13.64545 -13.41731 -13.21043 -12.96477 -12.83480 -12.51601 -12.48338 -12.39453 -12.28414 -12.14178 -12.12855 -11.83737 -11.71681 -11.45148 -11.37184 -10.92737 -10.62540 -9.65517 -9.10978 -8.85029 -7.85834 -5.28716 0.43555 1.46361 1.50008 1.55786 1.63347 1.92620 2.24651 2.51850 3.25939 3.54180 3.63642 3.76541 3.93160 4.00175 4.09474 4.19892 4.32944 4.35318 4.44829 4.45463 4.46116 4.57702 4.70924 4.78038 4.81776 4.90768 4.90976 5.00067 5.03148 5.15168 5.21809 5.24244 5.31897 5.42541 5.49208 5.60693 5.61796 5.69897 5.80242 6.05519 6.28084 6.59174 7.11358 7.16353 7.83608 8.25883 9.17874 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036552 B = 0.003076 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.841449 B = 9101.136540 C = 9288.471413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.145 4.145 3 C -0.107 4.107 4 C -0.126 4.126 5 C -0.143 4.143 6 C -0.097 4.097 7 C 0.522 3.478 8 O -0.594 6.594 9 N -0.615 5.615 10 C 0.108 3.892 11 C -0.143 4.143 12 C 0.166 3.834 13 H 0.074 0.926 14 N -0.603 5.603 15 C 0.178 3.822 16 C -0.268 4.268 17 H 0.072 0.928 18 C -0.049 4.049 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.273 1.273 24 C 0.096 3.904 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.012 0.988 39 H 0.014 0.986 40 H 0.028 0.972 41 H 0.249 0.751 42 H 0.054 0.946 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 -6.066 -13.479 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.107 4.107 4 C -0.182 4.182 5 C -0.162 4.162 6 C -0.136 4.136 7 C 0.313 3.687 8 O -0.475 6.475 9 N -0.348 5.348 10 C -0.014 4.014 11 C -0.182 4.182 12 C 0.057 3.943 13 H 0.092 0.908 14 N -0.324 5.324 15 C 0.033 3.967 16 C -0.398 4.398 17 H 0.090 0.910 18 C -0.245 4.245 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.199 1.199 24 C -0.030 4.030 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.742 -6.557 -13.129 23.025 hybrid contribution 1.000 -0.018 1.285 1.628 sum -16.742 -6.575 -11.844 21.536 Atomic orbital electron populations 1.24654 0.95143 1.03263 0.97850 1.21987 0.96121 0.96045 1.02140 1.20844 0.93760 0.95573 1.00534 1.20984 1.00849 0.93660 1.02694 1.22753 0.94414 0.97625 1.01388 1.20764 0.97414 0.98689 0.96747 1.21020 0.80555 0.81207 0.85876 1.90673 1.70362 1.31634 1.54828 1.48604 1.38480 1.15180 1.32584 1.22220 1.00783 0.81748 0.96629 1.23067 0.99161 0.99730 0.96287 1.21536 0.87851 0.91164 0.93762 0.90806 1.44011 1.00693 1.68302 1.19420 1.20511 0.87086 0.95126 0.93977 1.19511 0.98293 1.29370 0.92652 0.91005 1.25619 0.97966 0.99425 1.01477 1.70245 1.08636 1.45818 1.33225 0.85369 0.76795 0.77716 0.80742 1.21061 1.21990 1.19905 1.22601 0.91391 0.99552 0.89414 0.86865 0.86829 0.87327 0.89673 0.90160 0.91466 0.88234 0.85666 0.85418 0.88476 0.88803 0.89617 0.91709 0.97020 0.96696 0.95332 0.94168 0.92744 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 14.11 66.64 0.94 -1.43 16 2 C -0.14 -2.62 9.83 23.43 0.23 -2.39 16 3 C -0.11 -2.02 5.98 -18.71 -0.11 -2.13 16 4 C -0.13 -1.68 8.55 71.24 0.61 -1.07 16 5 C -0.14 -3.11 8.45 24.51 0.21 -2.90 16 6 C -0.10 -1.85 4.97 29.10 0.14 -1.71 16 7 C 0.52 15.58 7.84 87.66 0.69 16.27 16 8 O -0.59 -23.52 16.29 -3.03 -0.05 -23.57 16 9 N -0.61 -18.07 3.33 -811.63 -2.70 -20.77 16 10 C 0.11 2.36 6.49 86.73 0.56 2.92 16 11 C -0.14 -4.29 6.52 31.78 0.21 -4.09 16 12 C 0.17 6.42 3.54 46.39 0.16 6.58 16 13 H 0.07 2.89 7.92 -2.39 -0.02 2.87 16 14 N -0.60 -29.51 2.97 -694.97 -2.06 -31.57 16 15 C 0.18 8.66 7.68 127.77 0.98 9.64 16 16 C -0.27 -14.56 9.65 84.03 0.81 -13.75 16 17 H 0.07 3.79 7.84 -2.91 -0.02 3.77 16 18 C -0.05 -2.74 5.01 84.86 0.43 -2.31 16 19 N -0.93 -54.30 10.71 21.65 0.23 -54.07 16 20 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.10 3.55 6.46 86.86 0.56 4.11 16 25 H 0.11 1.27 6.07 -2.91 -0.02 1.25 16 26 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16 27 H 0.11 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.08 0.86 6.66 -2.39 -0.02 0.84 16 29 H 0.08 0.84 6.21 -2.39 -0.01 0.83 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 2.45 8.05 -2.91 -0.02 2.43 16 32 H 0.13 1.78 5.77 -2.39 -0.01 1.77 16 33 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.06 2.13 7.16 -2.39 -0.02 2.11 16 38 H 0.01 0.60 7.45 -2.39 -0.02 0.59 16 39 H 0.01 0.78 7.14 -2.38 -0.02 0.76 16 40 H 0.03 1.21 6.24 -2.39 -0.01 1.19 16 41 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.05 2.15 6.22 -2.38 -0.01 2.14 16 43 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 Total: -1.00 -69.79 345.19 4.85 -64.94 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.98 Total: 10.38 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 6.42 Total: 7.74 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -4.53 Total: -106.41 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -69.79 4.85 -64.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191791007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.449 kcal (2) G-P(sol) polarization free energy of solvation -69.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds