Wall clock time and date at job start Tue Mar 31 2020 00:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47190 * 1 3 3 C 1.17407 * 179.97438 * 2 1 4 4 C 1.47195 * 179.97438 * 223.84220 * 3 2 1 5 5 C 1.52998 * 109.46820 * 180.70632 * 4 3 2 6 6 C 1.53008 * 109.47085 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47330 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99927 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00008 * 179.97438 * 7 6 5 10 10 C 1.47427 * 125.65053 * 0.02812 * 9 7 6 11 11 C 1.54911 * 104.83114 * 204.09127 * 10 9 7 12 12 C 1.55157 * 101.58258 * 322.98975 * 11 10 9 13 13 H 1.09004 * 110.71940 * 277.13910 * 12 11 10 14 14 N 1.46495 * 110.72126 * 154.04698 * 12 11 10 15 15 C 1.46502 * 119.99926 * 301.44807 * 14 12 11 16 16 C 1.36934 * 120.00441 * 121.45272 * 14 12 11 17 17 H 1.08004 * 119.99876 * 23.48805 * 16 14 12 18 18 C 1.38813 * 120.00440 * 203.48711 * 16 14 12 19 19 N 1.31614 * 119.99679 * 15.10130 * 18 16 14 20 20 Si 1.86793 * 120.00055 * 195.10232 * 18 16 14 21 21 H 1.48501 * 109.47414 * 59.99874 * 20 18 16 22 22 H 1.48511 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 299.99790 * 20 18 16 24 24 C 1.47029 * 125.64656 * 179.71371 * 9 7 6 25 25 H 1.09000 * 109.46947 * 255.45058 * 1 2 3 26 26 H 1.09008 * 109.47481 * 15.44896 * 1 2 3 27 27 H 1.08996 * 109.47585 * 135.45339 * 1 2 3 28 28 H 1.09000 * 109.47283 * 60.70714 * 4 3 2 29 29 H 1.08998 * 109.47113 * 300.70743 * 4 3 2 30 30 H 1.08998 * 109.47368 * 299.99955 * 5 4 3 31 31 H 1.09000 * 109.47125 * 59.99985 * 5 4 3 32 32 H 1.08998 * 109.47077 * 300.00251 * 6 5 4 33 33 H 1.09000 * 109.47055 * 60.00060 * 6 5 4 34 34 H 1.09005 * 110.36293 * 322.92668 * 10 9 7 35 35 H 1.08994 * 110.36799 * 85.25023 * 10 9 7 36 36 H 1.08996 * 111.00401 * 81.06274 * 11 10 9 37 37 H 1.09003 * 111.00189 * 204.91559 * 11 10 9 38 38 H 1.09006 * 109.46767 * 95.21003 * 15 14 12 39 39 H 1.09001 * 109.47647 * 215.21139 * 15 14 12 40 40 H 1.09005 * 109.47197 * 335.21513 * 15 14 12 41 41 H 0.97001 * 120.00286 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.88209 * 298.39894 * 24 9 7 43 43 H 1.09006 * 109.87643 * 59.56316 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1179 0.0017 0.0005 5 6 4.6267 1.4444 0.0184 6 6 6.1568 1.4457 0.0195 7 6 6.6580 2.8668 0.0378 8 8 5.8692 3.7879 0.0494 9 7 7.9828 3.1140 0.0424 10 6 9.0473 2.0942 0.0303 11 6 10.2788 2.7989 0.6521 12 6 10.1346 4.2359 0.0850 13 1 10.5491 4.2968 -0.9213 14 7 10.7803 5.2093 0.9691 15 6 10.3514 5.3284 2.3649 16 6 11.7847 6.0079 0.4910 17 1 11.8561 6.2103 -0.5675 18 6 12.7111 6.5573 1.3667 19 7 12.8158 6.0895 2.5925 20 14 13.8090 7.9604 0.8054 21 1 12.9682 9.1158 0.4014 22 1 14.7043 8.3644 1.9193 23 1 14.6281 7.5159 -0.3508 24 6 8.6059 4.4457 0.0538 25 1 -0.3633 -0.2582 0.9947 26 1 -0.3634 0.9906 -0.2738 27 1 -0.3634 -0.7323 -0.7208 28 1 4.4819 -0.5009 -0.8957 29 1 4.4814 -0.5228 0.8841 30 1 4.2633 1.9689 -0.8653 31 1 4.2627 1.9470 0.9145 32 1 6.5199 0.9213 0.9034 33 1 6.5212 0.9430 -0.8764 34 1 8.7565 1.2351 0.6350 35 1 9.2638 1.7838 -0.9918 36 1 10.2197 2.8007 1.7404 37 1 11.2059 2.3364 0.3134 38 1 10.9985 4.7201 2.9969 39 1 10.4147 6.3709 2.6768 40 1 9.3220 4.9827 2.4594 41 1 13.4629 6.4736 3.2046 42 1 8.3233 4.9949 -0.8443 43 1 8.2908 4.9948 0.9412 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191838026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:46 Heat of formation + Delta-G solvation = 23.091046 kcal Electronic energy + Delta-G solvation = -21038.387823 eV Core-core repulsion = 17892.177968 eV Total energy + Delta-G solvation = -3146.209855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.82125 -37.58168 -35.79069 -34.78007 -33.43709 -31.67014 -30.06196 -29.60851 -28.00018 -26.51536 -26.02986 -23.72471 -22.32546 -21.88953 -19.27801 -18.95194 -17.17540 -17.05676 -16.42906 -16.20928 -15.56036 -14.97855 -14.67014 -14.14107 -14.08244 -13.76088 -13.69619 -13.49741 -13.31955 -12.90605 -12.64642 -12.50621 -12.24673 -12.20507 -11.69430 -11.64851 -11.34830 -11.04519 -10.99956 -10.77950 -10.58958 -10.49306 -10.26398 -9.96116 -9.89769 -9.88545 -9.87438 -9.58299 -8.59186 -8.31194 -6.82073 -5.77905 -3.25127 2.50537 2.54614 2.84498 3.24075 3.36972 3.42806 3.44417 4.04141 4.45669 4.58566 4.83979 4.88256 5.03797 5.14743 5.19737 5.27954 5.29031 5.34963 5.38449 5.39278 5.44710 5.47687 5.55907 5.58029 5.73325 5.81632 5.90277 5.97881 6.01638 6.15440 6.30756 6.39863 6.57028 6.64546 6.79188 6.87347 7.30972 7.48384 7.67126 7.76097 7.81674 8.33352 8.40159 9.16918 9.79880 10.29102 11.26769 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048880 B = 0.002643 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.696544 B =10592.209185 C =10742.993400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.007 4.007 5 C -0.099 4.099 6 C -0.136 4.136 7 C 0.522 3.478 8 O -0.549 6.549 9 N -0.613 5.613 10 C 0.099 3.901 11 C -0.151 4.151 12 C 0.173 3.827 13 H 0.078 0.922 14 N -0.585 5.585 15 C 0.158 3.842 16 C -0.262 4.262 17 H 0.069 0.931 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.086 3.914 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.003 0.997 41 H 0.254 0.746 42 H 0.060 0.940 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.112 -14.446 -4.817 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.137 4.137 6 C -0.175 4.175 7 C 0.310 3.690 8 O -0.427 6.427 9 N -0.347 5.347 10 C -0.024 4.024 11 C -0.192 4.192 12 C 0.062 3.938 13 H 0.096 0.904 14 N -0.306 5.306 15 C 0.013 3.987 16 C -0.391 4.391 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.039 4.039 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.466 -13.867 -4.639 21.284 hybrid contribution 0.756 0.681 -0.156 1.029 sum -14.710 -13.187 -4.795 20.329 Atomic orbital electron populations 1.18829 0.84794 1.02988 1.02846 1.22412 0.93982 1.01570 1.02135 1.22354 0.93675 1.01181 1.00982 1.18717 0.84419 0.98000 1.03213 1.21284 0.93130 0.94936 1.04334 1.21641 0.96979 0.94533 1.04395 1.20279 0.80763 0.91416 0.76510 1.90695 1.54470 1.46823 1.50718 1.48562 1.04823 1.09129 1.72235 1.22376 0.88182 0.91354 1.00521 1.23384 0.95834 0.98389 1.01545 1.21298 0.89135 0.88138 0.95211 0.90406 1.43842 1.39295 1.39835 1.07612 1.20801 0.92879 1.00220 0.84775 1.19155 1.04155 1.22649 0.93183 0.91317 1.25021 0.97481 1.00290 0.96599 1.70061 1.36967 1.41594 1.06090 0.86320 0.80087 0.82515 0.77507 1.20997 1.21631 1.20865 1.22737 0.95824 0.83389 1.01905 0.90346 0.90217 0.90392 0.89574 0.89539 0.90827 0.90785 0.88834 0.88885 0.91301 0.91624 0.90637 0.90353 0.94774 0.94165 0.97831 0.93605 0.92205 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.10 16 2 C -0.20 -2.14 14.13 -37.13 -0.52 -2.67 16 3 C -0.18 -2.02 13.34 -37.12 -0.50 -2.51 16 4 C -0.01 -0.06 5.70 -29.52 -0.17 -0.23 16 5 C -0.10 -1.06 4.46 -26.73 -0.12 -1.18 16 6 C -0.14 -1.40 4.71 -27.88 -0.13 -1.53 16 7 C 0.52 8.10 7.85 -10.99 -0.09 8.01 16 8 O -0.55 -10.75 16.31 5.56 0.09 -10.66 16 9 N -0.61 -9.63 3.33 -170.51 -0.57 -10.19 16 10 C 0.10 1.26 6.69 -2.53 -0.02 1.25 16 11 C -0.15 -2.47 6.65 -24.58 -0.16 -2.63 16 12 C 0.17 3.37 3.42 -66.09 -0.23 3.15 16 13 H 0.08 1.50 7.93 -51.93 -0.41 1.09 16 14 N -0.59 -14.23 2.93 -171.38 -0.50 -14.74 16 15 C 0.16 3.83 7.70 59.85 0.46 4.29 16 16 C -0.26 -7.02 9.59 -15.06 -0.14 -7.16 16 17 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 18 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 19 N -0.90 -25.84 10.86 55.49 0.60 -25.23 16 20 Si 0.91 21.53 29.58 -169.99 -5.03 16.50 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 C 0.09 1.59 6.41 -3.06 -0.02 1.57 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.07 0.92 8.10 -51.93 -0.42 0.49 16 32 H 0.09 0.80 7.85 -51.93 -0.41 0.39 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.36 7.28 -51.93 -0.38 0.98 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.03 0.89 7.32 -51.93 -0.38 0.51 16 39 H 0.04 1.05 7.43 -51.93 -0.39 0.67 16 40 H 0.00 0.07 6.30 -51.93 -0.33 -0.26 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.50 6.15 -51.93 -0.32 1.18 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -32.43 353.74 -8.63 -41.06 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.19 Total: -2.58 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.37 Total: 0.50 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.47 Total: -50.16 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.43 -8.63 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191838026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.155 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds