Wall clock time and date at job start Tue Mar 31 2020 00:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47190 * 1 3 3 C 1.17407 * 179.97438 * 2 1 4 4 C 1.47195 * 179.97438 * 223.84220 * 3 2 1 5 5 C 1.52998 * 109.46820 * 180.70632 * 4 3 2 6 6 C 1.53008 * 109.47085 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47330 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99927 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00008 * 179.97438 * 7 6 5 10 10 C 1.47427 * 125.65053 * 0.02812 * 9 7 6 11 11 C 1.54911 * 104.83114 * 204.09127 * 10 9 7 12 12 C 1.55157 * 101.58258 * 322.98975 * 11 10 9 13 13 H 1.09004 * 110.71940 * 277.13910 * 12 11 10 14 14 N 1.46495 * 110.72126 * 154.04698 * 12 11 10 15 15 C 1.46502 * 119.99926 * 301.44807 * 14 12 11 16 16 C 1.36934 * 120.00441 * 121.45272 * 14 12 11 17 17 H 1.08004 * 119.99876 * 23.48805 * 16 14 12 18 18 C 1.38813 * 120.00440 * 203.48711 * 16 14 12 19 19 N 1.31614 * 119.99679 * 15.10130 * 18 16 14 20 20 Si 1.86793 * 120.00055 * 195.10232 * 18 16 14 21 21 H 1.48501 * 109.47414 * 59.99874 * 20 18 16 22 22 H 1.48511 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 299.99790 * 20 18 16 24 24 C 1.47029 * 125.64656 * 179.71371 * 9 7 6 25 25 H 1.09000 * 109.46947 * 255.45058 * 1 2 3 26 26 H 1.09008 * 109.47481 * 15.44896 * 1 2 3 27 27 H 1.08996 * 109.47585 * 135.45339 * 1 2 3 28 28 H 1.09000 * 109.47283 * 60.70714 * 4 3 2 29 29 H 1.08998 * 109.47113 * 300.70743 * 4 3 2 30 30 H 1.08998 * 109.47368 * 299.99955 * 5 4 3 31 31 H 1.09000 * 109.47125 * 59.99985 * 5 4 3 32 32 H 1.08998 * 109.47077 * 300.00251 * 6 5 4 33 33 H 1.09000 * 109.47055 * 60.00060 * 6 5 4 34 34 H 1.09005 * 110.36293 * 322.92668 * 10 9 7 35 35 H 1.08994 * 110.36799 * 85.25023 * 10 9 7 36 36 H 1.08996 * 111.00401 * 81.06274 * 11 10 9 37 37 H 1.09003 * 111.00189 * 204.91559 * 11 10 9 38 38 H 1.09006 * 109.46767 * 95.21003 * 15 14 12 39 39 H 1.09001 * 109.47647 * 215.21139 * 15 14 12 40 40 H 1.09005 * 109.47197 * 335.21513 * 15 14 12 41 41 H 0.97001 * 120.00286 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.88209 * 298.39894 * 24 9 7 43 43 H 1.09006 * 109.87643 * 59.56316 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1179 0.0017 0.0005 5 6 4.6267 1.4444 0.0184 6 6 6.1568 1.4457 0.0195 7 6 6.6580 2.8668 0.0378 8 8 5.8692 3.7879 0.0494 9 7 7.9828 3.1140 0.0424 10 6 9.0473 2.0942 0.0303 11 6 10.2788 2.7989 0.6521 12 6 10.1346 4.2359 0.0850 13 1 10.5491 4.2968 -0.9213 14 7 10.7803 5.2093 0.9691 15 6 10.3514 5.3284 2.3649 16 6 11.7847 6.0079 0.4910 17 1 11.8561 6.2103 -0.5675 18 6 12.7111 6.5573 1.3667 19 7 12.8158 6.0895 2.5925 20 14 13.8090 7.9604 0.8054 21 1 12.9682 9.1158 0.4014 22 1 14.7043 8.3644 1.9193 23 1 14.6281 7.5159 -0.3508 24 6 8.6059 4.4457 0.0538 25 1 -0.3633 -0.2582 0.9947 26 1 -0.3634 0.9906 -0.2738 27 1 -0.3634 -0.7323 -0.7208 28 1 4.4819 -0.5009 -0.8957 29 1 4.4814 -0.5228 0.8841 30 1 4.2633 1.9689 -0.8653 31 1 4.2627 1.9470 0.9145 32 1 6.5199 0.9213 0.9034 33 1 6.5212 0.9430 -0.8764 34 1 8.7565 1.2351 0.6350 35 1 9.2638 1.7838 -0.9918 36 1 10.2197 2.8007 1.7404 37 1 11.2059 2.3364 0.3134 38 1 10.9985 4.7201 2.9969 39 1 10.4147 6.3709 2.6768 40 1 9.3220 4.9827 2.4594 41 1 13.4629 6.4736 3.2046 42 1 8.3233 4.9949 -0.8443 43 1 8.2908 4.9948 0.9412 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191838026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:45 Heat of formation + Delta-G solvation = 4.333491 kcal Electronic energy + Delta-G solvation = -21039.201212 eV Core-core repulsion = 17892.177968 eV Total energy + Delta-G solvation = -3147.023244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09576 -39.00635 -36.65860 -36.46869 -34.21682 -33.43350 -31.43002 -30.59190 -29.29745 -28.08532 -27.36155 -25.21395 -23.83262 -22.81632 -20.87396 -20.11444 -18.94544 -18.24259 -17.61298 -17.29113 -16.82219 -16.37617 -15.98046 -15.52265 -15.12741 -14.87340 -14.69831 -14.51839 -14.41224 -14.30182 -14.11015 -13.70051 -13.30096 -13.22355 -13.07403 -12.93098 -12.86015 -12.58012 -12.45671 -12.35837 -12.24957 -12.08988 -11.85487 -11.82389 -11.45085 -10.93295 -10.65897 -10.61772 -10.55814 -9.61691 -8.81289 -7.84997 -5.33924 1.46834 1.50107 1.55999 1.66312 1.71329 1.79459 2.05586 2.51234 3.27394 3.38449 3.55424 3.60553 3.87190 4.02526 4.08369 4.14541 4.29319 4.37275 4.47276 4.51599 4.63048 4.66163 4.71013 4.76244 4.80386 4.82291 4.85124 4.88965 4.94041 5.02797 5.14537 5.17516 5.21553 5.27829 5.32245 5.36560 5.42352 5.63393 5.65678 6.30535 6.61917 6.74445 7.11292 7.18938 7.82545 8.27980 9.18263 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048880 B = 0.002643 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.696544 B =10592.209185 C =10742.993400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.001 4.001 5 C -0.093 4.093 6 C -0.122 4.122 7 C 0.514 3.486 8 O -0.600 6.600 9 N -0.615 5.615 10 C 0.108 3.892 11 C -0.144 4.144 12 C 0.165 3.835 13 H 0.081 0.919 14 N -0.603 5.603 15 C 0.179 3.821 16 C -0.269 4.269 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.283 1.283 22 H -0.295 1.295 23 H -0.271 1.271 24 C 0.096 3.904 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.013 0.987 39 H 0.009 0.991 40 H 0.022 0.978 41 H 0.249 0.751 42 H 0.051 0.949 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.414 -16.984 -6.132 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.037 4.037 5 C -0.131 4.131 6 C -0.161 4.161 7 C 0.305 3.695 8 O -0.482 6.482 9 N -0.349 5.349 10 C -0.014 4.014 11 C -0.184 4.184 12 C 0.056 3.944 13 H 0.100 0.900 14 N -0.324 5.324 15 C 0.034 3.966 16 C -0.399 4.399 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.796 3.204 21 H -0.209 1.209 22 H -0.221 1.221 23 H -0.197 1.197 24 C -0.029 4.029 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.777 -16.455 -5.989 23.570 hybrid contribution 0.752 1.475 0.215 1.669 sum -15.026 -14.980 -5.773 21.989 Atomic orbital electron populations 1.19048 0.82752 1.03944 1.04171 1.23421 0.95488 1.01124 1.02005 1.23128 0.94978 1.01844 1.01523 1.18782 0.83118 0.96547 1.05251 1.21174 0.93737 0.96093 1.02127 1.21692 0.96123 0.90871 1.07429 1.21325 0.79998 0.93214 0.74934 1.90677 1.55677 1.48938 1.52874 1.48669 1.05703 1.08384 1.72106 1.22553 0.85159 0.90939 1.02737 1.23222 0.98417 0.96286 1.00439 1.21485 0.89031 0.89192 0.94677 0.90046 1.44009 1.39240 1.41257 1.07893 1.20451 0.93366 0.97837 0.84982 1.19501 1.04135 1.22788 0.93444 0.90898 1.25771 0.99273 1.02639 0.96857 1.70211 1.37853 1.42830 1.07074 0.85329 0.78324 0.79613 0.77086 1.20944 1.22127 1.19663 1.22342 0.95310 0.85177 1.00088 0.89047 0.89545 0.88736 0.87264 0.87540 0.92943 0.93317 0.85848 0.85303 0.87386 0.88553 0.92524 0.89400 0.96844 0.97211 0.95953 0.94198 0.93056 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.52 10.32 70.17 0.72 0.20 16 2 C -0.22 -4.50 14.13 31.12 0.44 -4.06 16 3 C -0.21 -4.50 13.34 31.12 0.42 -4.08 16 4 C 0.00 -0.01 5.70 28.79 0.16 0.15 16 5 C -0.09 -1.85 4.46 30.60 0.14 -1.71 16 6 C -0.12 -2.05 4.71 29.85 0.14 -1.91 16 7 C 0.51 15.03 7.85 87.66 0.69 15.72 16 8 O -0.60 -23.71 16.31 -3.04 -0.05 -23.76 16 9 N -0.62 -17.96 3.33 -811.75 -2.70 -20.66 16 10 C 0.11 2.29 6.69 86.86 0.58 2.87 16 11 C -0.14 -4.38 6.65 31.99 0.21 -4.17 16 12 C 0.16 6.32 3.42 46.18 0.16 6.48 16 13 H 0.08 3.05 7.93 -2.39 -0.02 3.03 16 14 N -0.60 -29.69 2.93 -696.12 -2.04 -31.74 16 15 C 0.18 8.95 7.70 127.77 0.98 9.93 16 16 C -0.27 -14.52 9.59 84.03 0.81 -13.71 16 17 H 0.07 3.79 7.85 -2.91 -0.02 3.77 16 18 C -0.05 -2.76 5.06 84.86 0.43 -2.33 16 19 N -0.93 -54.71 10.86 21.65 0.24 -54.47 16 20 Si 0.97 44.72 29.58 68.60 2.03 46.75 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.10 3.57 6.41 86.73 0.56 4.12 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 26 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 32 H 0.12 1.43 7.85 -2.39 -0.02 1.42 16 33 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.11 1.56 7.48 -2.38 -0.02 1.54 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.96 7.28 -2.39 -0.02 1.94 16 37 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.01 0.72 7.32 -2.38 -0.02 0.70 16 39 H 0.01 0.51 7.43 -2.39 -0.02 0.49 16 40 H 0.02 1.00 6.30 -2.38 -0.02 0.99 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.04 1.80 6.15 -2.38 -0.01 1.79 16 Total: -1.00 -74.18 353.74 4.88 -69.30 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.98 Total: 7.07 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 6.43 Total: 7.51 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.51 Total: -106.87 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -74.18 4.88 -69.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191838026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.632 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds