Wall clock time and date at job start Tue Mar 31 2020 00:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52992 * 109.46972 * 245.50000 * 3 2 1 5 5 C 1.53008 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47366 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46981 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00240 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99993 * 179.97438 * 7 6 5 10 10 C 1.48216 * 119.96950 * 180.02562 * 9 7 6 11 11 C 1.47139 * 110.33900 * 102.47479 * 10 9 7 12 12 C 1.53800 * 111.84388 * 58.29922 * 11 10 9 13 13 N 1.43463 * 107.95594 * 281.66239 * 12 11 10 14 14 C 1.36935 * 118.94418 * 273.61114 * 13 12 11 15 15 H 1.08002 * 119.99775 * 27.13389 * 14 13 12 16 16 C 1.38811 * 120.00114 * 207.14382 * 14 13 12 17 17 N 1.31615 * 120.00227 * 26.49459 * 16 14 13 18 18 Si 1.86806 * 119.99744 * 206.50038 * 16 14 13 19 19 H 1.48495 * 109.47040 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47035 * 59.99654 * 18 16 14 21 21 H 1.48493 * 109.47219 * 299.99924 * 18 16 14 22 22 C 1.48860 * 122.11873 * 93.88979 * 13 12 11 23 23 C 1.43623 * 119.97019 * 359.97438 * 9 7 6 24 24 H 4.44643 * 5.63344 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46948 * 125.50109 * 3 2 1 26 26 H 1.08998 * 109.47301 * 5.50232 * 3 2 1 27 27 H 1.08996 * 109.47357 * 59.99992 * 4 3 2 28 28 H 1.09006 * 109.47156 * 299.99946 * 4 3 2 29 29 H 1.09001 * 109.46500 * 59.99853 * 5 4 3 30 30 H 1.08998 * 109.46865 * 300.00202 * 5 4 3 31 31 H 1.09004 * 109.46867 * 60.00158 * 6 5 4 32 32 H 1.08998 * 109.47618 * 300.00138 * 6 5 4 33 33 H 1.08998 * 109.32711 * 342.20666 * 10 9 7 34 34 H 1.09003 * 109.17959 * 222.64946 * 10 9 7 35 35 H 1.09001 * 109.00884 * 297.68394 * 11 10 9 36 36 H 1.09005 * 108.94169 * 178.85941 * 11 10 9 37 37 H 1.08997 * 109.76249 * 162.04703 * 12 11 10 38 38 H 1.09000 * 109.80883 * 41.30044 * 12 11 10 39 39 H 0.96998 * 119.99990 * 5.79357 * 17 16 14 40 40 H 1.09002 * 109.48060 * 80.34523 * 22 13 12 41 41 H 1.08998 * 109.48404 * 200.37951 * 22 13 12 42 42 H 1.08999 * 108.87197 * 31.46418 * 23 9 7 43 43 H 1.09000 * 108.87340 * 149.99854 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.5991 1.3126 5 6 4.6858 0.6004 1.3124 6 6 5.1954 1.1993 2.6247 7 6 6.7024 1.2000 2.6247 8 8 7.3090 0.7648 1.6690 9 7 7.3761 1.6853 3.6864 10 6 8.8582 1.6862 3.6854 11 6 9.3687 3.0356 3.3967 12 6 8.8642 4.0689 4.4182 13 7 7.5129 4.4069 4.0749 14 6 7.2904 5.4005 3.1594 15 1 8.0318 5.6143 2.4036 16 6 6.1122 6.1332 3.2028 17 7 5.4656 6.2728 4.3406 18 14 5.4443 6.9208 1.6461 19 1 4.1839 7.6415 1.9576 20 1 5.1748 5.8674 0.6347 21 1 6.4431 7.8792 1.1085 22 6 6.3446 3.7162 4.6865 23 6 6.6571 2.2022 4.8171 24 1 -1.0501 0.0001 -0.0002 25 1 3.0091 0.5976 -0.8367 26 1 3.0098 -1.0221 -0.0985 27 1 2.7926 0.0022 2.1492 28 1 2.7919 1.6219 1.4111 29 1 5.0484 1.1976 0.4757 30 1 5.0499 -0.4222 1.2137 31 1 4.8327 0.6025 3.4615 32 1 4.8313 2.2220 2.7230 33 1 9.2189 0.9937 2.9248 34 1 9.2172 1.3663 4.6637 35 1 9.0423 3.3330 2.4001 36 1 10.4582 3.0146 3.4216 37 1 9.4888 4.9613 4.3788 38 1 8.8941 3.6422 5.4207 39 1 5.8537 5.9365 5.1634 40 1 6.1490 4.1369 5.6728 41 1 5.4686 3.8531 4.0525 42 1 5.7190 1.6563 4.9180 43 1 7.2538 2.0459 5.7158 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195541173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:00 Heat of formation + Delta-G solvation = 25.045926 kcal Electronic energy + Delta-G solvation = -22460.131819 eV Core-core repulsion = 19314.006734 eV Total energy + Delta-G solvation = -3146.125085 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.83120 -37.24988 -36.02071 -34.41093 -33.38026 -32.61959 -30.82585 -29.71750 -27.61187 -25.73875 -24.64274 -23.70294 -22.08195 -20.86336 -19.77864 -18.50939 -17.99635 -17.41462 -16.52201 -16.00632 -15.81597 -14.92614 -14.39459 -14.27235 -14.20550 -13.70870 -13.64748 -13.22269 -13.02742 -12.74262 -12.58094 -12.30091 -12.09973 -11.60955 -11.54048 -11.31272 -11.11711 -11.02923 -10.71579 -10.58674 -10.31888 -10.28875 -10.27869 -10.19395 -10.12353 -10.01083 -9.39346 -9.28257 -8.33446 -8.12059 -6.90065 -6.07981 -3.25248 2.75505 2.79088 3.09278 3.48436 3.51832 3.52723 3.69772 4.30064 4.58764 4.89171 4.99338 5.01247 5.11569 5.27554 5.40206 5.40288 5.50658 5.53578 5.59511 5.67853 5.76731 5.78765 5.86118 5.93307 5.95879 5.99133 6.01866 6.07444 6.18325 6.34272 6.37708 6.45339 6.47014 6.67268 6.75411 6.91883 6.96359 7.18959 7.56469 7.92257 8.05112 8.55682 8.66094 9.14038 9.82935 10.22412 11.18127 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.005958 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.557119 B = 4698.182172 C = 6131.109909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.101 4.101 6 C -0.141 4.141 7 C 0.521 3.479 8 O -0.558 6.558 9 N -0.587 5.587 10 C 0.130 3.870 11 C -0.168 4.168 12 C 0.164 3.836 13 N -0.594 5.594 14 C -0.352 4.352 15 H 0.053 0.947 16 C -0.018 4.018 17 N -0.914 5.914 18 Si 1.054 2.946 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.293 1.293 22 C 0.137 3.863 23 C 0.088 3.912 24 H 0.215 0.785 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.031 0.969 39 H 0.268 0.732 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 -12.269 -0.963 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.179 4.179 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.139 4.139 6 C -0.180 4.180 7 C 0.310 3.690 8 O -0.437 6.437 9 N -0.318 5.318 10 C 0.008 3.992 11 C -0.209 4.209 12 C 0.036 3.964 13 N -0.316 5.316 14 C -0.481 4.481 15 H 0.071 0.929 16 C -0.220 4.220 17 N -0.555 5.555 18 Si 0.884 3.116 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.220 1.220 22 C 0.011 3.989 23 C -0.038 4.038 24 H 0.232 0.768 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.566 -11.621 -2.062 12.329 hybrid contribution 1.129 -0.631 0.693 1.467 sum -2.437 -12.252 -1.369 12.566 Atomic orbital electron populations 1.24873 0.95959 1.01719 1.01362 1.23282 0.94699 0.99895 1.00026 1.18789 0.84394 1.02479 0.99519 1.21573 0.95623 1.01817 0.96275 1.21314 0.93629 1.01809 0.97166 1.21705 0.92517 1.04116 0.99701 1.20557 0.90102 0.76586 0.81747 1.90612 1.70600 1.48510 1.33954 1.47379 1.06580 1.59888 1.17980 1.20538 0.79250 0.98293 1.01118 1.21832 0.98819 0.96672 1.03594 1.20284 0.87067 0.95319 0.93732 1.43675 0.99128 1.39417 1.49424 1.19917 1.07533 1.12386 1.08287 0.92903 1.25699 0.96854 0.96833 1.02655 1.70824 1.43103 1.43378 0.98162 0.83687 0.76421 0.76133 0.75408 1.21083 1.22014 1.21972 1.22168 0.91671 0.87589 0.97484 1.21988 0.96245 0.97403 0.88118 0.76805 0.89353 0.89585 0.91638 0.91136 0.90918 0.91378 0.89519 0.88212 0.90449 0.92314 0.91237 0.92708 0.93529 0.95113 0.92127 0.94755 0.91251 0.91249 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.41 19.25 29.55 0.57 -1.85 16 2 C -0.18 -2.16 13.34 -37.12 -0.50 -2.65 16 3 C -0.02 -0.17 5.70 -29.52 -0.17 -0.33 16 4 C -0.12 -1.35 5.17 -26.73 -0.14 -1.49 16 5 C -0.10 -1.38 4.50 -26.73 -0.12 -1.50 16 6 C -0.14 -2.12 4.25 -27.89 -0.12 -2.24 16 7 C 0.52 9.60 7.67 -10.99 -0.08 9.52 16 8 O -0.56 -11.75 15.42 5.56 0.09 -11.67 16 9 N -0.59 -10.37 2.46 -176.48 -0.43 -10.80 16 10 C 0.13 2.17 5.70 -5.91 -0.03 2.14 16 11 C -0.17 -3.09 5.64 -29.13 -0.16 -3.25 16 12 C 0.16 3.33 5.63 -5.23 -0.03 3.30 16 13 N -0.59 -14.05 2.38 -171.82 -0.41 -14.46 16 14 C -0.35 -9.59 9.12 -15.06 -0.14 -9.72 16 15 H 0.05 1.50 7.96 -52.49 -0.42 1.08 16 16 C -0.02 -0.50 4.60 -17.43 -0.08 -0.58 16 17 N -0.91 -26.32 12.63 55.49 0.70 -25.62 16 18 Si 1.05 25.21 29.99 -169.99 -5.10 20.11 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.14 2.91 5.09 -1.60 -0.01 2.90 16 23 C 0.09 1.46 5.05 -4.43 -0.02 1.44 16 24 H 0.22 1.56 7.80 -54.09 -0.42 1.14 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.09 1.08 7.37 -51.93 -0.38 0.69 16 32 H 0.10 1.66 7.34 -51.93 -0.38 1.27 16 33 H 0.08 1.33 7.13 -51.93 -0.37 0.96 16 34 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.07 1.53 7.91 -51.93 -0.41 1.12 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.99 8.02 -51.93 -0.42 0.57 16 38 H 0.03 0.56 7.59 -51.93 -0.39 0.17 16 39 H 0.27 7.68 6.37 -40.82 -0.26 7.42 16 40 H 0.03 0.76 7.11 -51.93 -0.37 0.39 16 41 H 0.07 1.64 6.22 -51.93 -0.32 1.32 16 42 H 0.07 0.97 6.38 -51.93 -0.33 0.64 16 43 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -31.87 344.79 -8.04 -39.91 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.05 Total: 1.65 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.03 Total: -4.32 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.14 Total: -50.88 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.10 Total: 20.11 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.87 -8.04 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195541173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.958 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds