Wall clock time and date at job start Tue Mar 31 2020 00:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52992 * 109.46972 * 245.50000 * 3 2 1 5 5 C 1.53008 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47366 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46981 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00240 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99993 * 179.97438 * 7 6 5 10 10 C 1.48216 * 119.96950 * 180.02562 * 9 7 6 11 11 C 1.47139 * 110.33900 * 102.47479 * 10 9 7 12 12 C 1.53800 * 111.84388 * 58.29922 * 11 10 9 13 13 N 1.43463 * 107.95594 * 281.66239 * 12 11 10 14 14 C 1.36935 * 118.94418 * 273.61114 * 13 12 11 15 15 H 1.08002 * 119.99775 * 27.13389 * 14 13 12 16 16 C 1.38811 * 120.00114 * 207.14382 * 14 13 12 17 17 N 1.31615 * 120.00227 * 26.49459 * 16 14 13 18 18 Si 1.86806 * 119.99744 * 206.50038 * 16 14 13 19 19 H 1.48495 * 109.47040 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47035 * 59.99654 * 18 16 14 21 21 H 1.48493 * 109.47219 * 299.99924 * 18 16 14 22 22 C 1.48860 * 122.11873 * 93.88979 * 13 12 11 23 23 C 1.43623 * 119.97019 * 359.97438 * 9 7 6 24 24 H 4.44643 * 5.63344 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46948 * 125.50109 * 3 2 1 26 26 H 1.08998 * 109.47301 * 5.50232 * 3 2 1 27 27 H 1.08996 * 109.47357 * 59.99992 * 4 3 2 28 28 H 1.09006 * 109.47156 * 299.99946 * 4 3 2 29 29 H 1.09001 * 109.46500 * 59.99853 * 5 4 3 30 30 H 1.08998 * 109.46865 * 300.00202 * 5 4 3 31 31 H 1.09004 * 109.46867 * 60.00158 * 6 5 4 32 32 H 1.08998 * 109.47618 * 300.00138 * 6 5 4 33 33 H 1.08998 * 109.32711 * 342.20666 * 10 9 7 34 34 H 1.09003 * 109.17959 * 222.64946 * 10 9 7 35 35 H 1.09001 * 109.00884 * 297.68394 * 11 10 9 36 36 H 1.09005 * 108.94169 * 178.85941 * 11 10 9 37 37 H 1.08997 * 109.76249 * 162.04703 * 12 11 10 38 38 H 1.09000 * 109.80883 * 41.30044 * 12 11 10 39 39 H 0.96998 * 119.99990 * 5.79357 * 17 16 14 40 40 H 1.09002 * 109.48060 * 80.34523 * 22 13 12 41 41 H 1.08998 * 109.48404 * 200.37951 * 22 13 12 42 42 H 1.08999 * 108.87197 * 31.46418 * 23 9 7 43 43 H 1.09000 * 108.87340 * 149.99854 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.5991 1.3126 5 6 4.6858 0.6004 1.3124 6 6 5.1954 1.1993 2.6247 7 6 6.7024 1.2000 2.6247 8 8 7.3090 0.7648 1.6690 9 7 7.3761 1.6853 3.6864 10 6 8.8582 1.6862 3.6854 11 6 9.3687 3.0356 3.3967 12 6 8.8642 4.0689 4.4182 13 7 7.5129 4.4069 4.0749 14 6 7.2904 5.4005 3.1594 15 1 8.0318 5.6143 2.4036 16 6 6.1122 6.1332 3.2028 17 7 5.4656 6.2728 4.3406 18 14 5.4443 6.9208 1.6461 19 1 4.1839 7.6415 1.9576 20 1 5.1748 5.8674 0.6347 21 1 6.4431 7.8792 1.1085 22 6 6.3446 3.7162 4.6865 23 6 6.6571 2.2022 4.8171 24 1 -1.0501 0.0001 -0.0002 25 1 3.0091 0.5976 -0.8367 26 1 3.0098 -1.0221 -0.0985 27 1 2.7926 0.0022 2.1492 28 1 2.7919 1.6219 1.4111 29 1 5.0484 1.1976 0.4757 30 1 5.0499 -0.4222 1.2137 31 1 4.8327 0.6025 3.4615 32 1 4.8313 2.2220 2.7230 33 1 9.2189 0.9937 2.9248 34 1 9.2172 1.3663 4.6637 35 1 9.0423 3.3330 2.4001 36 1 10.4582 3.0146 3.4216 37 1 9.4888 4.9613 4.3788 38 1 8.8941 3.6422 5.4207 39 1 5.8537 5.9365 5.1634 40 1 6.1490 4.1369 5.6728 41 1 5.4686 3.8531 4.0525 42 1 5.7190 1.6563 4.9180 43 1 7.2538 2.0459 5.7158 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195541173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:59 Heat of formation + Delta-G solvation = 7.759567 kcal Electronic energy + Delta-G solvation = -22460.881412 eV Core-core repulsion = 19314.006734 eV Total energy + Delta-G solvation = -3146.874678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26787 -38.83081 -37.05980 -36.11388 -34.70366 -33.86710 -32.66052 -30.78759 -29.23097 -27.22683 -25.93774 -25.52244 -23.41394 -22.02617 -21.50631 -19.87300 -19.32324 -18.84964 -17.99539 -17.44681 -17.00618 -16.27354 -16.10205 -15.83501 -15.43524 -15.24560 -15.04794 -14.60003 -14.37976 -14.22740 -13.96942 -13.71282 -13.57981 -12.95349 -12.80335 -12.70271 -12.62324 -12.54016 -12.16543 -12.05000 -12.02139 -11.89494 -11.79673 -11.60227 -11.30513 -11.12205 -10.97293 -10.71885 -10.39102 -9.58989 -8.87628 -8.20142 -5.36767 1.53290 1.58176 1.65501 1.77777 1.88639 1.93613 2.19147 2.62227 3.17947 3.44717 3.57399 3.69934 3.93878 4.00250 4.04733 4.12219 4.19903 4.32226 4.39526 4.43853 4.49725 4.58865 4.62240 4.67665 4.75970 4.79849 4.87166 4.90529 4.98597 5.02431 5.06771 5.16544 5.20325 5.21884 5.32173 5.39600 5.42774 5.73274 5.87643 6.42759 6.53668 6.72775 7.15088 7.24353 7.83372 8.20574 9.01524 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.005958 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.557119 B = 4698.182172 C = 6131.109909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.218 4.218 3 C -0.015 4.015 4 C -0.106 4.106 5 C -0.094 4.094 6 C -0.136 4.136 7 C 0.510 3.490 8 O -0.590 6.590 9 N -0.590 5.590 10 C 0.126 3.874 11 C -0.153 4.153 12 C 0.160 3.840 13 N -0.609 5.609 14 C -0.355 4.355 15 H 0.032 0.968 16 C -0.059 4.059 17 N -0.935 5.935 18 Si 1.093 2.907 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.282 1.282 22 C 0.142 3.858 23 C 0.098 3.902 24 H 0.244 0.756 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.023 0.977 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.060 0.940 39 H 0.259 0.741 40 H 0.025 0.975 41 H 0.037 0.963 42 H 0.101 0.899 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -13.998 -0.132 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.218 4.218 3 C -0.051 4.051 4 C -0.143 4.143 5 C -0.132 4.132 6 C -0.175 4.175 7 C 0.301 3.699 8 O -0.472 6.472 9 N -0.320 5.320 10 C 0.005 3.995 11 C -0.194 4.194 12 C 0.033 3.967 13 N -0.333 5.333 14 C -0.486 4.486 15 H 0.050 0.950 16 C -0.257 4.257 17 N -0.577 5.577 18 Si 0.920 3.080 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.016 3.984 23 C -0.027 4.027 24 H 0.261 0.739 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.042 0.958 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.119 0.881 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.958 -13.362 -1.211 13.988 hybrid contribution 1.316 -0.084 0.444 1.392 sum -2.642 -13.446 -0.767 13.724 Atomic orbital electron populations 1.25710 0.96918 1.00433 0.99903 1.23694 0.95511 1.01179 1.01408 1.18776 0.84293 1.03196 0.98857 1.21463 0.94009 1.01379 0.97456 1.21239 0.94878 1.01496 0.95587 1.21728 0.90292 1.03752 1.01762 1.21181 0.91423 0.75994 0.81351 1.90591 1.71514 1.50022 1.35048 1.47546 1.07150 1.59226 1.18112 1.20647 0.78893 0.96876 1.03066 1.21640 1.00616 0.96983 1.00122 1.20424 0.85234 0.95377 0.95665 1.43890 1.01048 1.39198 1.49122 1.19999 1.07135 1.13097 1.08334 0.95036 1.26657 0.97381 0.97568 1.04128 1.70912 1.43481 1.45014 0.98263 0.83130 0.76059 0.75805 0.73046 1.21169 1.21561 1.20786 1.22091 0.89779 0.90771 0.95781 1.21915 0.98349 0.93870 0.88594 0.73930 0.89627 0.88177 0.90189 0.92507 0.93348 0.90666 0.86123 0.89997 0.90936 0.88475 0.95847 0.89819 0.95172 0.92226 0.93085 0.95677 0.94415 0.88140 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.23 19.25 74.32 1.43 -2.80 16 2 C -0.22 -5.00 13.34 31.12 0.42 -4.59 16 3 C -0.01 -0.31 5.70 28.78 0.16 -0.15 16 4 C -0.11 -2.38 5.17 30.59 0.16 -2.22 16 5 C -0.09 -2.50 4.50 30.59 0.14 -2.37 16 6 C -0.14 -3.93 4.25 29.84 0.13 -3.81 16 7 C 0.51 18.31 7.67 87.66 0.67 18.98 16 8 O -0.59 -24.80 15.42 -3.02 -0.05 -24.84 16 9 N -0.59 -19.67 2.46 -830.63 -2.05 -21.71 16 10 C 0.13 3.93 5.70 84.23 0.48 4.41 16 11 C -0.15 -5.43 5.64 29.04 0.16 -5.27 16 12 C 0.16 6.32 5.63 87.21 0.49 6.81 16 13 N -0.61 -28.91 2.38 -697.52 -1.66 -30.57 16 14 C -0.36 -19.81 9.12 84.03 0.77 -19.05 16 15 H 0.03 1.86 7.96 -2.91 -0.02 1.84 16 16 C -0.06 -3.32 4.60 84.86 0.39 -2.93 16 17 N -0.93 -54.67 12.63 21.65 0.27 -54.40 16 18 Si 1.09 51.86 29.99 68.60 2.06 53.92 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 C 0.14 5.93 5.09 86.66 0.44 6.37 16 23 C 0.10 2.96 5.05 87.65 0.44 3.41 16 24 H 0.24 2.89 7.80 -4.41 -0.03 2.85 16 25 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 30 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 31 H 0.12 2.63 7.37 -2.38 -0.02 2.61 16 32 H 0.08 2.72 7.34 -2.39 -0.02 2.70 16 33 H 0.07 2.36 7.13 -2.39 -0.02 2.35 16 34 H 0.10 2.33 8.05 -2.39 -0.02 2.31 16 35 H 0.02 1.03 7.91 -2.39 -0.02 1.01 16 36 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.03 1.27 8.02 -2.39 -0.02 1.25 16 38 H 0.06 2.02 7.59 -2.39 -0.02 2.00 16 39 H 0.26 15.14 6.37 -92.71 -0.59 14.55 16 40 H 0.03 1.10 7.11 -2.39 -0.02 1.08 16 41 H 0.04 1.80 6.22 -2.39 -0.01 1.79 16 42 H 0.10 2.45 6.38 -2.39 -0.02 2.44 16 43 H 0.09 2.31 7.72 -2.39 -0.02 2.29 16 Total: -1.00 -70.95 344.79 6.00 -64.95 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.14 Total: 15.84 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 6.28 Total: -3.18 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -3.43 Total: -106.68 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.06 Total: 53.92 kcal Total: -70.95 6.00 -64.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195541173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.707 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds