Wall clock time and date at job start Tue Mar 31 2020 01:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47115 * 119.99755 * 2 1 4 4 C 1.50700 * 120.00401 * 359.97438 * 3 2 1 5 5 C 1.32880 * 119.99733 * 179.97438 * 3 2 1 6 6 C 1.50697 * 119.99609 * 173.20413 * 5 3 2 7 7 C 1.50695 * 109.47117 * 233.13104 * 6 5 3 8 8 O 1.21284 * 120.00392 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00124 * 180.02562 * 7 6 5 10 10 C 1.48213 * 119.97327 * 180.02562 * 9 7 6 11 11 C 1.47144 * 110.34391 * 102.45917 * 10 9 7 12 12 C 1.53242 * 111.80955 * 58.23068 * 11 10 9 13 13 N 1.43465 * 108.26434 * 281.67321 * 12 11 10 14 14 C 1.36932 * 118.94271 * 273.78607 * 13 12 11 15 15 H 1.07996 * 119.99928 * 19.99248 * 14 13 12 16 16 C 1.38812 * 120.00047 * 199.99592 * 14 13 12 17 17 N 1.31620 * 120.00182 * 211.81948 * 16 14 13 18 18 Si 1.86801 * 119.99881 * 31.81802 * 16 14 13 19 19 H 1.48496 * 109.47007 * 267.03059 * 18 16 14 20 20 H 1.48503 * 109.47320 * 147.03149 * 18 16 14 21 21 H 1.48497 * 109.47165 * 27.03323 * 18 16 14 22 22 C 1.48860 * 122.11668 * 93.50221 * 13 12 11 23 23 C 1.43621 * 119.96811 * 359.97438 * 9 7 6 24 24 H 1.08000 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99340 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99946 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46773 * 264.67061 * 4 3 2 28 28 H 1.09005 * 109.46539 * 24.66937 * 4 3 2 29 29 H 1.08994 * 109.47193 * 144.66956 * 4 3 2 30 30 H 1.07999 * 120.00102 * 353.20870 * 5 3 2 31 31 H 1.09001 * 109.46818 * 113.13121 * 6 5 3 32 32 H 1.09000 * 109.47558 * 353.13784 * 6 5 3 33 33 H 1.08997 * 109.32401 * 222.73062 * 10 9 7 34 34 H 1.08994 * 109.32462 * 342.37447 * 10 9 7 35 35 H 1.09003 * 109.00368 * 178.90212 * 11 10 9 36 36 H 1.08992 * 109.00947 * 297.76749 * 11 10 9 37 37 H 1.08995 * 109.49354 * 162.04022 * 12 11 10 38 38 H 1.08993 * 109.74009 * 41.45604 * 12 11 10 39 39 H 0.96996 * 120.00081 * 5.07528 * 17 16 14 40 40 H 1.09001 * 109.47927 * 80.88347 * 22 13 12 41 41 H 1.09000 * 109.47845 * 200.90585 * 22 13 12 42 42 H 1.09008 * 108.87053 * 149.90868 * 23 9 7 43 43 H 1.08996 * 108.87528 * 31.47911 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3931 1.2741 0.0005 6 6 4.1465 2.5700 -0.1539 7 6 5.1364 2.4440 -1.2832 8 8 5.2213 1.4045 -1.9021 9 7 5.9273 3.4867 -1.6055 10 6 6.9003 3.3623 -2.7167 11 6 6.3919 4.0397 -3.9200 12 6 6.1085 5.5233 -3.6613 13 7 4.8582 5.6276 -2.9656 14 6 3.6977 5.6694 -3.6912 15 1 3.6839 5.3088 -4.7090 16 6 2.5389 6.1754 -3.1184 17 7 1.3656 5.6959 -3.4735 18 14 2.6445 7.5368 -1.8437 19 1 2.6841 6.9401 -0.4844 20 1 1.4562 8.4194 -1.9624 21 1 3.8772 8.3330 -2.0709 22 6 4.7815 5.6857 -1.4801 23 6 5.8259 4.7177 -0.8726 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8687 -0.9353 0.0004 27 1 1.2122 2.9413 -1.0239 28 1 0.3202 2.4269 0.4280 29 1 1.8550 3.3131 0.5937 30 1 3.9330 0.3454 0.1115 31 1 4.6774 2.7940 0.7713 32 1 3.4447 3.3744 -0.3739 33 1 7.8463 3.8153 -2.4202 34 1 7.0598 2.3075 -2.9401 35 1 7.1314 3.9517 -4.7159 36 1 5.4693 3.5541 -4.2376 37 1 6.0466 6.0529 -4.6119 38 1 6.9057 5.9496 -3.0524 39 1 1.3137 4.9402 -4.0793 40 1 4.9893 6.7019 -1.1449 41 1 3.7828 5.3931 -1.1560 42 1 6.7999 5.2070 -0.8688 43 1 5.5421 4.4935 0.1556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196789982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:55 Heat of formation + Delta-G solvation = 27.452284 kcal Electronic energy + Delta-G solvation = -23105.580156 eV Core-core repulsion = 19959.559419 eV Total energy + Delta-G solvation = -3146.020738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.89714 -37.39160 -36.49320 -34.33474 -33.17022 -31.98570 -31.38308 -28.63746 -27.63365 -26.50488 -25.57614 -23.15588 -22.48201 -20.65489 -19.82048 -18.55461 -17.61641 -17.44608 -16.61618 -16.11146 -15.74693 -15.09883 -14.76483 -14.10560 -13.96151 -13.83382 -13.46444 -13.13469 -12.91944 -12.81282 -12.62798 -12.42121 -12.11195 -11.99135 -11.56711 -11.40807 -11.36062 -11.17132 -10.88190 -10.64008 -10.38088 -10.30306 -10.26593 -10.03929 -9.86449 -9.37549 -9.30986 -8.40859 -8.15976 -7.97183 -7.02689 -6.36003 -3.21600 1.53922 3.03754 3.22416 3.35195 3.51835 3.55319 3.66410 4.58976 4.85994 4.88422 4.95890 5.09912 5.30177 5.36974 5.44122 5.45207 5.53068 5.55820 5.61637 5.73369 5.78928 5.81076 5.82282 5.91093 6.05864 6.08233 6.13475 6.28679 6.33668 6.39633 6.47457 6.53349 6.56536 6.67466 6.70346 6.89591 6.92339 7.12644 7.16583 7.86221 8.05138 8.43838 8.63330 9.02888 9.68438 10.14419 11.08128 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.007868 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.735338 B = 3557.969789 C = 4815.447399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C -0.105 4.105 4 C -0.125 4.125 5 C -0.121 4.121 6 C -0.118 4.118 7 C 0.528 3.472 8 O -0.550 6.550 9 N -0.589 5.589 10 C 0.130 3.870 11 C -0.169 4.169 12 C 0.163 3.837 13 N -0.596 5.596 14 C -0.353 4.353 15 H 0.067 0.933 16 C -0.007 4.007 17 N -0.904 5.904 18 Si 1.037 2.963 19 H -0.295 1.295 20 H -0.299 1.299 21 H -0.289 1.289 22 C 0.109 3.891 23 C 0.092 3.908 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.740 -4.947 9.162 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.129 4.129 3 C -0.105 4.105 4 C -0.181 4.181 5 C -0.140 4.140 6 C -0.157 4.157 7 C 0.317 3.683 8 O -0.429 6.429 9 N -0.320 5.320 10 C 0.008 3.992 11 C -0.210 4.210 12 C 0.035 3.965 13 N -0.318 5.318 14 C -0.481 4.481 15 H 0.085 0.915 16 C -0.209 4.209 17 N -0.542 5.542 18 Si 0.868 3.132 19 H -0.223 1.223 20 H -0.226 1.226 21 H -0.215 1.215 22 C -0.018 4.018 23 C -0.034 4.034 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.896 -4.460 9.737 12.226 hybrid contribution 0.912 -0.880 -1.045 1.643 sum 6.808 -5.340 8.692 12.264 Atomic orbital electron populations 1.24408 0.95766 1.01947 1.00790 1.21836 0.95271 0.95956 0.99880 1.20605 0.93962 0.94439 1.01512 1.20912 0.99625 0.94032 1.03542 1.22710 0.93868 0.97501 0.99900 1.20845 0.98277 0.98850 0.97749 1.20362 0.80293 0.83051 0.84630 1.90626 1.68661 1.29275 1.54299 1.47351 1.38286 1.12196 1.34216 1.20545 0.90134 1.01483 0.87000 1.21739 1.01599 1.00909 0.96737 1.20201 0.87882 0.92470 0.95997 1.43901 1.02817 1.85538 0.99567 1.20134 0.87530 1.41278 0.99164 0.91513 1.25939 0.91415 1.01792 1.01790 1.70847 1.25137 1.24923 1.33339 0.84240 0.74772 0.78444 0.75743 1.22346 1.22642 1.21518 1.22480 0.98500 0.95852 0.84941 1.21836 1.00729 0.85963 0.94893 0.87831 0.88424 0.87122 0.90219 0.91775 0.91548 0.86843 0.88592 0.87318 0.92086 0.90387 0.92530 0.91139 0.93213 0.94768 0.92471 0.94806 0.91003 0.91289 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 14.12 28.88 0.41 -2.02 16 2 C -0.11 -1.56 9.83 -37.83 -0.37 -1.93 16 3 C -0.11 -1.65 5.98 -102.87 -0.62 -2.27 16 4 C -0.12 -1.99 8.49 36.01 0.31 -1.68 16 5 C -0.12 -1.94 8.45 -36.16 -0.31 -2.24 16 6 C -0.12 -1.89 4.30 -29.04 -0.12 -2.02 16 7 C 0.53 9.99 7.66 -10.98 -0.08 9.91 16 8 O -0.55 -12.10 15.46 5.55 0.09 -12.02 16 9 N -0.59 -10.27 2.46 -176.69 -0.43 -10.71 16 10 C 0.13 2.13 5.69 -5.91 -0.03 2.10 16 11 C -0.17 -3.05 5.63 -29.42 -0.17 -3.22 16 12 C 0.16 3.15 5.59 -5.52 -0.03 3.12 16 13 N -0.60 -13.58 2.38 -172.38 -0.41 -13.99 16 14 C -0.35 -9.62 9.49 -15.06 -0.14 -9.76 16 15 H 0.07 2.00 8.06 -52.49 -0.42 1.58 16 16 C -0.01 -0.19 4.95 -17.43 -0.09 -0.28 16 17 N -0.90 -27.11 13.70 55.49 0.76 -26.35 16 18 Si 1.04 24.89 24.64 -169.99 -4.19 20.70 16 19 H -0.30 -6.49 6.67 56.52 0.38 -6.11 16 20 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.29 -6.69 6.99 56.52 0.40 -6.30 16 22 C 0.11 2.17 4.57 -1.78 -0.01 2.16 16 23 C 0.09 1.44 5.05 -4.61 -0.02 1.42 16 24 H 0.10 1.31 6.05 -52.49 -0.32 0.99 16 25 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.06 0.89 6.17 -51.93 -0.32 0.57 16 29 H 0.07 0.99 6.80 -51.93 -0.35 0.64 16 30 H 0.11 1.75 8.05 -52.49 -0.42 1.32 16 31 H 0.10 1.22 7.37 -51.93 -0.38 0.83 16 32 H 0.11 1.90 5.05 -51.93 -0.26 1.64 16 33 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.08 1.34 7.12 -51.93 -0.37 0.97 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.58 7.90 -51.93 -0.41 1.17 16 37 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 38 H 0.03 0.58 7.58 -51.93 -0.39 0.19 16 39 H 0.27 8.07 8.73 -40.82 -0.36 7.71 16 40 H 0.03 0.66 6.41 -51.93 -0.33 0.33 16 41 H 0.07 1.57 4.75 -51.93 -0.25 1.33 16 42 H 0.07 0.93 7.73 -51.92 -0.40 0.53 16 43 H 0.07 0.93 6.38 -51.93 -0.33 0.60 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -31.87 331.86 -7.14 -39.01 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.68 Total: 5.07 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.28 Total: -6.72 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.08 Total: -51.05 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -4.19 Total: 20.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.87 -7.14 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196789982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.465 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds