Wall clock time and date at job start Tue Mar 31 2020 01:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47115 * 119.99755 * 2 1 4 4 C 1.50700 * 120.00401 * 359.97438 * 3 2 1 5 5 C 1.32880 * 119.99733 * 179.97438 * 3 2 1 6 6 C 1.50697 * 119.99609 * 173.20413 * 5 3 2 7 7 C 1.50695 * 109.47117 * 233.13104 * 6 5 3 8 8 O 1.21284 * 120.00392 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00124 * 180.02562 * 7 6 5 10 10 C 1.48213 * 119.97327 * 180.02562 * 9 7 6 11 11 C 1.47144 * 110.34391 * 102.45917 * 10 9 7 12 12 C 1.53242 * 111.80955 * 58.23068 * 11 10 9 13 13 N 1.43465 * 108.26434 * 281.67321 * 12 11 10 14 14 C 1.36932 * 118.94271 * 273.78607 * 13 12 11 15 15 H 1.07996 * 119.99928 * 19.99248 * 14 13 12 16 16 C 1.38812 * 120.00047 * 199.99592 * 14 13 12 17 17 N 1.31620 * 120.00182 * 211.81948 * 16 14 13 18 18 Si 1.86801 * 119.99881 * 31.81802 * 16 14 13 19 19 H 1.48496 * 109.47007 * 267.03059 * 18 16 14 20 20 H 1.48503 * 109.47320 * 147.03149 * 18 16 14 21 21 H 1.48497 * 109.47165 * 27.03323 * 18 16 14 22 22 C 1.48860 * 122.11668 * 93.50221 * 13 12 11 23 23 C 1.43621 * 119.96811 * 359.97438 * 9 7 6 24 24 H 1.08000 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99340 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99946 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46773 * 264.67061 * 4 3 2 28 28 H 1.09005 * 109.46539 * 24.66937 * 4 3 2 29 29 H 1.08994 * 109.47193 * 144.66956 * 4 3 2 30 30 H 1.07999 * 120.00102 * 353.20870 * 5 3 2 31 31 H 1.09001 * 109.46818 * 113.13121 * 6 5 3 32 32 H 1.09000 * 109.47558 * 353.13784 * 6 5 3 33 33 H 1.08997 * 109.32401 * 222.73062 * 10 9 7 34 34 H 1.08994 * 109.32462 * 342.37447 * 10 9 7 35 35 H 1.09003 * 109.00368 * 178.90212 * 11 10 9 36 36 H 1.08992 * 109.00947 * 297.76749 * 11 10 9 37 37 H 1.08995 * 109.49354 * 162.04022 * 12 11 10 38 38 H 1.08993 * 109.74009 * 41.45604 * 12 11 10 39 39 H 0.96996 * 120.00081 * 5.07528 * 17 16 14 40 40 H 1.09001 * 109.47927 * 80.88347 * 22 13 12 41 41 H 1.09000 * 109.47845 * 200.90585 * 22 13 12 42 42 H 1.09008 * 108.87053 * 149.90868 * 23 9 7 43 43 H 1.08996 * 108.87528 * 31.47911 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5792 -0.0006 5 6 3.3931 1.2741 0.0005 6 6 4.1465 2.5700 -0.1539 7 6 5.1364 2.4440 -1.2832 8 8 5.2213 1.4045 -1.9021 9 7 5.9273 3.4867 -1.6055 10 6 6.9003 3.3623 -2.7167 11 6 6.3919 4.0397 -3.9200 12 6 6.1085 5.5233 -3.6613 13 7 4.8582 5.6276 -2.9656 14 6 3.6977 5.6694 -3.6912 15 1 3.6839 5.3088 -4.7090 16 6 2.5389 6.1754 -3.1184 17 7 1.3656 5.6959 -3.4735 18 14 2.6445 7.5368 -1.8437 19 1 2.6841 6.9401 -0.4844 20 1 1.4562 8.4194 -1.9624 21 1 3.8772 8.3330 -2.0709 22 6 4.7815 5.6857 -1.4801 23 6 5.8259 4.7177 -0.8726 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8687 -0.9353 0.0004 27 1 1.2122 2.9413 -1.0239 28 1 0.3202 2.4269 0.4280 29 1 1.8550 3.3131 0.5937 30 1 3.9330 0.3454 0.1115 31 1 4.6774 2.7940 0.7713 32 1 3.4447 3.3744 -0.3739 33 1 7.8463 3.8153 -2.4202 34 1 7.0598 2.3075 -2.9401 35 1 7.1314 3.9517 -4.7159 36 1 5.4693 3.5541 -4.2376 37 1 6.0466 6.0529 -4.6119 38 1 6.9057 5.9496 -3.0524 39 1 1.3137 4.9402 -4.0793 40 1 4.9893 6.7019 -1.1449 41 1 3.7828 5.3931 -1.1560 42 1 6.7999 5.2070 -0.8688 43 1 5.5421 4.4935 0.1556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196789982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:54 Heat of formation + Delta-G solvation = 7.376295 kcal Electronic energy + Delta-G solvation = -23106.450717 eV Core-core repulsion = 19959.559419 eV Total energy + Delta-G solvation = -3146.891298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31967 -38.90353 -37.78024 -36.01710 -34.63259 -33.48689 -33.04595 -29.93268 -29.17331 -27.88042 -27.05033 -24.91649 -23.91444 -21.92068 -21.46248 -19.98082 -19.27474 -18.83833 -18.09006 -17.53047 -17.04057 -16.61455 -16.41488 -15.58651 -15.50378 -15.24653 -15.02361 -14.54416 -14.45846 -14.29098 -13.98160 -13.94100 -13.51940 -13.29813 -13.27282 -12.82699 -12.64400 -12.44947 -12.38617 -12.01153 -11.92695 -11.76883 -11.67438 -11.57681 -11.44218 -11.35166 -10.83182 -10.46482 -9.60150 -9.13928 -8.95582 -8.57672 -5.35713 0.39769 1.44125 1.58928 1.62870 1.77455 2.01324 2.27909 2.59793 3.02512 3.47695 3.67010 3.72907 3.94412 4.04449 4.09988 4.17331 4.29218 4.32665 4.38103 4.41175 4.46165 4.52088 4.63307 4.67133 4.73462 4.79512 4.84642 4.90488 4.95309 4.95444 5.01259 5.10494 5.18559 5.41104 5.44585 5.56346 5.71877 5.75013 5.83294 6.01182 6.26784 6.49717 6.95679 7.21727 7.75966 8.08210 8.84614 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.007868 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.735338 B = 3557.969789 C = 4815.447399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.136 4.136 3 C -0.113 4.113 4 C -0.120 4.120 5 C -0.133 4.133 6 C -0.112 4.112 7 C 0.516 3.484 8 O -0.592 6.592 9 N -0.590 5.590 10 C 0.127 3.873 11 C -0.156 4.156 12 C 0.158 3.842 13 N -0.609 5.609 14 C -0.340 4.340 15 H 0.016 0.984 16 C -0.062 4.062 17 N -0.941 5.941 18 Si 1.087 2.913 19 H -0.259 1.259 20 H -0.314 1.314 21 H -0.268 1.268 22 C 0.098 3.902 23 C 0.093 3.907 24 H 0.100 0.900 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.010 0.990 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.243 0.757 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.108 0.892 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.053 -4.075 12.218 15.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.113 4.113 4 C -0.176 4.176 5 C -0.152 4.152 6 C -0.151 4.151 7 C 0.306 3.694 8 O -0.474 6.474 9 N -0.320 5.320 10 C 0.006 3.994 11 C -0.196 4.196 12 C 0.032 3.968 13 N -0.333 5.333 14 C -0.470 4.470 15 H 0.034 0.966 16 C -0.257 4.257 17 N -0.582 5.582 18 Si 0.912 3.088 19 H -0.184 1.184 20 H -0.243 1.243 21 H -0.193 1.193 22 C -0.027 4.027 23 C -0.032 4.032 24 H 0.119 0.881 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.126 0.874 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.271 -3.580 12.815 15.667 hybrid contribution 0.190 -1.205 -2.138 2.461 sum 8.461 -4.784 10.677 14.439 Atomic orbital electron populations 1.24653 0.95395 1.03060 0.98319 1.21968 0.95934 0.95715 1.01764 1.20802 0.94244 0.95026 1.01247 1.20855 1.01042 0.94542 1.01206 1.22794 0.94039 0.97783 1.00566 1.20838 0.97522 0.98279 0.98431 1.20960 0.80540 0.82911 0.84984 1.90600 1.69933 1.31050 1.55790 1.47531 1.37807 1.12459 1.34228 1.20660 0.91628 1.01020 0.86080 1.21593 0.99590 0.99707 0.98749 1.20368 0.87634 0.92982 0.95862 1.43995 1.02302 1.85911 1.01074 1.19903 0.89782 1.39612 0.97700 0.96581 1.27196 0.90772 1.03521 1.04235 1.70990 1.26569 1.25521 1.35106 0.83582 0.74851 0.75081 0.75251 1.18434 1.24254 1.19314 1.22677 0.99050 0.98110 0.82854 1.21964 1.01258 0.84273 0.95727 0.88137 0.85889 0.85938 0.94291 0.90055 0.90568 0.86536 0.84509 0.88886 0.87346 0.91590 0.89815 0.97111 0.94861 0.90399 0.94838 0.92744 0.93484 0.87389 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 14.12 66.64 0.94 -3.32 16 2 C -0.14 -3.73 9.83 23.43 0.23 -3.50 16 3 C -0.11 -3.56 5.98 -18.71 -0.11 -3.67 16 4 C -0.12 -3.87 8.49 71.24 0.61 -3.27 16 5 C -0.13 -4.21 8.45 24.51 0.21 -4.00 16 6 C -0.11 -3.42 4.30 29.10 0.12 -3.29 16 7 C 0.52 19.07 7.66 87.65 0.67 19.75 16 8 O -0.59 -26.44 15.46 -3.04 -0.05 -26.49 16 9 N -0.59 -19.04 2.46 -831.31 -2.04 -21.08 16 10 C 0.13 3.84 5.69 84.23 0.48 4.32 16 11 C -0.16 -5.50 5.63 28.85 0.16 -5.34 16 12 C 0.16 5.85 5.59 87.02 0.49 6.33 16 13 N -0.61 -27.24 2.38 -699.29 -1.66 -28.90 16 14 C -0.34 -19.29 9.49 84.03 0.80 -18.49 16 15 H 0.02 1.05 8.06 -2.91 -0.02 1.03 16 16 C -0.06 -3.55 4.95 84.86 0.42 -3.13 16 17 N -0.94 -59.46 13.70 21.65 0.30 -59.17 16 18 Si 1.09 49.81 24.64 68.60 1.69 51.51 16 19 H -0.26 -10.27 6.67 99.48 0.66 -9.61 16 20 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 21 H -0.27 -11.28 6.99 99.48 0.70 -10.58 16 22 C 0.10 3.60 4.57 86.54 0.40 4.00 16 23 C 0.09 2.46 5.05 87.53 0.44 2.90 16 24 H 0.10 2.45 6.05 -2.91 -0.02 2.43 16 25 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 26 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 2.25 6.17 -2.38 -0.01 2.24 16 29 H 0.08 2.24 6.80 -2.39 -0.02 2.22 16 30 H 0.12 3.55 8.05 -2.91 -0.02 3.53 16 31 H 0.14 2.95 7.37 -2.39 -0.02 2.93 16 32 H 0.09 3.19 5.05 -2.39 -0.01 3.18 16 33 H 0.11 2.32 8.06 -2.39 -0.02 2.31 16 34 H 0.07 2.18 7.12 -2.39 -0.02 2.16 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.01 0.48 7.90 -2.39 -0.02 0.46 16 37 H 0.03 1.32 8.02 -2.39 -0.02 1.30 16 38 H 0.08 2.24 7.58 -2.39 -0.02 2.23 16 39 H 0.24 15.97 8.73 -92.71 -0.81 15.16 16 40 H 0.05 1.82 6.41 -2.39 -0.02 1.80 16 41 H 0.05 1.96 4.75 -2.39 -0.01 1.95 16 42 H 0.11 2.12 7.73 -2.38 -0.02 2.10 16 43 H 0.11 2.15 6.38 -2.39 -0.02 2.13 16 Total: -1.00 -76.01 331.86 4.98 -71.03 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.89 Total: 23.81 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 5.85 Total: -10.70 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -3.41 Total: -109.15 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 1.69 Total: 51.51 kcal Total: -76.01 4.98 -71.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196789982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.405 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds