Wall clock time and date at job start Tue Mar 31 2020 00:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47200 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 72.80474 * 3 2 1 5 5 C 1.53002 * 109.46924 * 243.15736 * 4 3 2 6 6 C 1.53000 * 109.47091 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47260 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99891 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00110 * 180.02562 * 7 6 5 10 10 C 1.48207 * 119.96907 * 180.02562 * 9 7 6 11 11 C 1.47136 * 110.34354 * 102.47137 * 10 9 7 12 12 C 1.53789 * 111.84457 * 58.29499 * 11 10 9 13 13 N 1.43465 * 107.95825 * 281.67085 * 12 11 10 14 14 C 1.36944 * 118.93846 * 273.60773 * 13 12 11 15 15 H 1.08000 * 119.99821 * 24.61982 * 14 13 12 16 16 C 1.38805 * 120.00011 * 204.62172 * 14 13 12 17 17 N 1.31621 * 119.99891 * 203.00951 * 16 14 13 18 18 Si 1.86805 * 120.00190 * 23.00689 * 16 14 13 19 19 H 1.48500 * 109.47330 * 265.74629 * 18 16 14 20 20 H 1.48496 * 109.47260 * 145.74620 * 18 16 14 21 21 H 1.48498 * 109.47188 * 25.74356 * 18 16 14 22 22 C 1.48859 * 122.12251 * 93.88897 * 13 12 11 23 23 C 1.43619 * 119.96666 * 359.97438 * 9 7 6 24 24 H 1.08999 * 109.46927 * 224.03463 * 1 2 3 25 25 H 1.09002 * 109.47404 * 344.03174 * 1 2 3 26 26 H 1.09001 * 109.47211 * 104.04219 * 1 2 3 27 27 H 1.09002 * 109.46600 * 123.15964 * 4 3 2 28 28 H 1.08994 * 109.47231 * 3.16207 * 4 3 2 29 29 H 1.09001 * 109.46821 * 60.00048 * 5 4 3 30 30 H 1.09003 * 109.47418 * 300.00494 * 5 4 3 31 31 H 1.09002 * 109.46647 * 60.00096 * 6 5 4 32 32 H 1.08994 * 109.47016 * 300.00443 * 6 5 4 33 33 H 1.08997 * 109.32692 * 342.19653 * 10 9 7 34 34 H 1.09005 * 109.18498 * 222.64715 * 10 9 7 35 35 H 1.09001 * 109.00324 * 297.68618 * 11 10 9 36 36 H 1.09000 * 108.94712 * 178.86542 * 11 10 9 37 37 H 1.08997 * 109.76815 * 162.05216 * 12 11 10 38 38 H 1.09006 * 109.80641 * 41.30596 * 12 11 10 39 39 H 0.96998 * 119.99910 * 5.15680 * 17 16 14 40 40 H 1.08995 * 109.48053 * 80.34635 * 22 13 12 41 41 H 1.09000 * 109.48016 * 200.38205 * 22 13 12 42 42 H 1.09003 * 108.87915 * 31.46748 * 23 9 7 43 43 H 1.09004 * 108.87092 * 150.00858 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0010 -0.0006 5 6 4.6283 0.6525 1.2863 6 6 6.1583 0.6536 1.2853 7 6 6.6610 1.2947 2.5531 8 8 5.8730 1.7104 3.3762 9 7 7.9861 1.4072 2.7719 10 6 8.4797 2.0374 4.0193 11 6 8.9328 1.0079 4.9678 12 6 10.0460 0.1304 4.3713 13 7 9.4342 -0.8210 3.4888 14 6 8.9659 -1.9992 4.0064 15 1 8.6877 -2.0585 5.0483 16 6 8.8490 -3.1172 3.1921 17 7 8.0140 -4.0821 3.5149 18 14 9.8766 -3.2524 1.6380 19 1 9.0940 -2.7472 0.4815 20 1 10.2399 -4.6735 1.4068 21 1 11.1128 -2.4438 1.7901 22 6 9.2975 -0.5714 2.0277 23 6 8.9185 0.9153 1.7966 24 1 -0.3633 -0.7388 0.7143 25 1 -0.3634 0.9880 0.2827 26 1 -0.3634 -0.2493 -0.9970 27 1 4.4807 0.5632 -0.8611 28 1 4.4817 -1.0249 -0.0575 29 1 4.2655 0.0903 2.1467 30 1 4.2646 1.6785 1.3431 31 1 6.5207 1.2161 0.4249 32 1 6.5223 -0.3722 1.2283 33 1 7.6760 2.6173 4.4729 34 1 9.3120 2.6997 3.7809 35 1 8.0868 0.3749 5.2355 36 1 9.3090 1.4960 5.8669 37 1 10.5712 -0.3928 5.1704 38 1 10.7475 0.7516 3.8143 39 1 7.4266 -3.9794 4.2800 40 1 10.2429 -0.7905 1.5315 41 1 8.5159 -1.2132 1.6209 42 1 8.4777 1.0165 0.8048 43 1 9.8263 1.5171 1.8417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196847252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:06 Heat of formation + Delta-G solvation = 25.808096 kcal Electronic energy + Delta-G solvation = -22357.946257 eV Core-core repulsion = 19211.854222 eV Total energy + Delta-G solvation = -3146.092035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.90047 -37.30121 -35.58475 -34.35718 -33.42515 -32.65984 -31.42117 -29.53785 -27.73842 -26.64145 -25.63380 -23.17593 -22.87701 -21.22610 -19.85444 -18.61415 -17.52219 -16.77985 -16.34969 -15.90646 -15.69466 -14.99752 -14.67089 -14.16200 -13.96705 -13.87843 -13.59919 -13.52842 -13.38153 -12.91581 -12.88519 -12.50563 -12.38507 -12.16374 -11.88635 -11.57047 -11.48144 -11.23189 -11.00691 -10.71593 -10.41168 -10.30374 -10.00805 -9.74114 -9.72339 -9.62941 -9.33651 -9.19888 -8.54628 -8.17080 -6.97767 -6.32701 -3.29501 2.73794 2.78392 3.04261 3.33730 3.45435 3.50339 3.63864 4.27409 4.57582 4.81618 4.91094 5.12681 5.17247 5.25296 5.36878 5.41904 5.42563 5.47054 5.54668 5.56600 5.57356 5.66428 5.72025 5.80156 5.81350 5.85103 5.89467 5.98929 6.07879 6.26672 6.30313 6.32964 6.43723 6.44755 6.50478 6.69794 6.88702 7.11078 7.71773 7.84949 8.05582 8.44936 8.61152 9.03709 9.65396 10.13306 11.11979 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014737 B = 0.005452 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.508449 B = 5134.373092 C = 6217.025264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.208 4.208 3 C -0.174 4.174 4 C -0.010 4.010 5 C -0.095 4.095 6 C -0.142 4.142 7 C 0.522 3.478 8 O -0.554 6.554 9 N -0.588 5.588 10 C 0.130 3.870 11 C -0.169 4.169 12 C 0.163 3.837 13 N -0.598 5.598 14 C -0.346 4.346 15 H 0.066 0.934 16 C -0.012 4.012 17 N -0.918 5.918 18 Si 1.054 2.946 19 H -0.296 1.296 20 H -0.301 1.301 21 H -0.286 1.286 22 C 0.100 3.900 23 C 0.093 3.907 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 11.853 -7.987 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.208 4.208 3 C -0.174 4.174 4 C -0.046 4.046 5 C -0.133 4.133 6 C -0.182 4.182 7 C 0.311 3.689 8 O -0.432 6.432 9 N -0.320 5.320 10 C 0.008 3.992 11 C -0.210 4.210 12 C 0.035 3.965 13 N -0.321 5.321 14 C -0.475 4.475 15 H 0.084 0.916 16 C -0.213 4.213 17 N -0.557 5.557 18 Si 0.885 3.115 19 H -0.224 1.224 20 H -0.229 1.229 21 H -0.213 1.213 22 C -0.026 4.026 23 C -0.033 4.033 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.550 11.083 -8.786 14.582 hybrid contribution -0.251 0.834 1.300 1.565 sum -3.801 11.917 -7.486 14.577 Atomic orbital electron populations 1.18797 0.84876 1.02827 1.02704 1.22359 0.93940 1.02467 1.02066 1.22404 0.93682 1.00599 1.00741 1.18757 0.84328 1.02626 0.98933 1.21241 0.93248 1.01812 0.97018 1.21727 0.97010 1.03202 0.96256 1.20510 0.81892 0.78195 0.88291 1.90633 1.55079 1.49862 1.47641 1.47363 1.05416 1.58740 1.20467 1.20552 0.98658 0.94965 0.85024 1.21822 1.02392 0.98862 0.97886 1.20321 0.92052 0.90898 0.93265 1.43906 1.68269 1.18036 1.01860 1.20232 1.41827 0.87961 0.97476 0.91636 1.26117 0.99974 0.92139 1.03107 1.70832 1.20544 1.35940 1.28344 0.84029 0.76804 0.74800 0.75836 1.22379 1.22885 1.21251 1.22692 0.99327 0.94031 0.86561 1.21874 0.93123 0.96989 0.91345 0.90353 0.90467 0.90514 0.89686 0.89155 0.90734 0.91226 0.89171 0.88065 0.90369 0.92123 0.91199 0.92545 0.93103 0.94709 0.92601 0.94211 0.91002 0.90903 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.33 10.32 34.37 0.35 0.02 16 2 C -0.21 -2.83 14.13 -37.12 -0.52 -3.35 16 3 C -0.17 -2.52 13.34 -37.12 -0.50 -3.02 16 4 C -0.01 -0.13 5.70 -29.52 -0.17 -0.30 16 5 C -0.10 -1.41 4.46 -26.73 -0.12 -1.53 16 6 C -0.14 -2.12 4.26 -27.88 -0.12 -2.24 16 7 C 0.52 9.61 7.67 -10.99 -0.08 9.52 16 8 O -0.55 -11.91 15.42 5.55 0.09 -11.83 16 9 N -0.59 -10.10 2.46 -176.47 -0.43 -10.53 16 10 C 0.13 2.11 5.70 -5.92 -0.03 2.07 16 11 C -0.17 -3.03 5.64 -29.14 -0.16 -3.20 16 12 C 0.16 3.15 5.63 -5.24 -0.03 3.12 16 13 N -0.60 -13.64 2.33 -171.82 -0.40 -14.04 16 14 C -0.35 -9.52 9.55 -15.06 -0.14 -9.67 16 15 H 0.07 1.98 8.06 -52.49 -0.42 1.56 16 16 C -0.01 -0.34 5.14 -17.43 -0.09 -0.43 16 17 N -0.92 -28.16 13.70 55.49 0.76 -27.40 16 18 Si 1.05 25.16 24.43 -169.99 -4.15 21.01 16 19 H -0.30 -6.48 6.75 56.52 0.38 -6.09 16 20 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.29 -6.44 6.41 56.52 0.36 -6.08 16 22 C 0.10 1.98 4.54 -1.59 -0.01 1.97 16 23 C 0.09 1.43 5.05 -4.43 -0.02 1.40 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 30 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.09 1.04 7.37 -51.93 -0.38 0.65 16 32 H 0.10 1.63 7.34 -51.93 -0.38 1.25 16 33 H 0.08 1.33 7.12 -51.93 -0.37 0.96 16 34 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 35 H 0.07 1.55 7.91 -51.93 -0.41 1.14 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 1.02 8.02 -51.93 -0.42 0.61 16 38 H 0.03 0.59 7.59 -51.93 -0.39 0.19 16 39 H 0.26 8.17 8.73 -40.82 -0.36 7.82 16 40 H 0.04 0.77 5.81 -51.93 -0.30 0.47 16 41 H 0.07 1.55 4.74 -51.93 -0.25 1.30 16 42 H 0.07 0.91 6.38 -51.93 -0.33 0.58 16 43 H 0.07 0.91 7.72 -51.93 -0.40 0.51 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -33.68 339.64 -7.74 -41.42 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.07 Total: 1.87 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.65 Total: -5.62 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.07 Total: -51.97 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.15 Total: 21.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.68 -7.74 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196847252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.226 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds